Functional clusters

Information

  • Type InterPro
  • Description Squalene epoxidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-11 5 CH_aar_390 2 2 0.000547395
Actinidia chinensis Lachesis_group7 5 CH_ach_607 2 2 0.000814819
Arabidopsis lyrata scaffold_6 5 CH_aly_61 5 5 0.0000000000000079731
Brassica carinata ChrB07 5 CH_bca_667 3 3 0.000000466096
Brassica carinata ChrC03 5 CH_bca_952 3 5 0.00000465981
Brassica napus A02 5 CH_bna_676 3 4 0.00000274905
Brassica napus C02 5 CH_bna_884 3 7 0.0000240444
Citrus clementina scaffold_1 5 CH_ccl_223 4 6 0.0000000017384
Carpinus fangiana Cfa02 5 CH_cfa_556 2 2 0.000454408
Carya illinoinensis Chr08 5 CH_cil_197 4 4 0.000000000050012
Capsella rubella scaffold_6 5 CH_cru_119 4 4 0.0000000000410454
Eucalyptus grandis Chr06 5 CH_egr_1412 2 2 0.000877912
Eutrema salsugineum scaffold_6 5 CH_esa_459 2 2 0.000456899
Fragaria vesca Fvb4 5 CH_fve_464 3 4 0.00000757753
Fragaria vesca Fvb2 5 CH_fve_90 6 12 0.0000000000000442472
Glycine max Gm04 5 CH_gma_409 3 4 0.00000142607
Lotus japonicus chr4 5 CH_lja_256 3 4 0.00000107369
Lonicera japonica GWHAAZE00000009 5 CH_lonja_541 3 4 0.00000120493
Malus domestica Chr05 5 CH_mdo_46 7 7 2.72376e-20
Malus domestica Chr07 5 CH_mdo_73 6 6 9.57602e-17
Oryza sativa ssp. japonica chr03 5 CH_osa_563 2 3 0.000158433
Physcomitrium patens Chr14 5 CH_ppa_248 2 2 0.000183818
Prunus persica Pp08 5 CH_ppe_329 3 3 0.0000000834721
Quercus lobata 6 5 CH_qlo_742 3 3 0.0000000399842
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_687 4 8 0.000000782095
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_900 3 3 0.0000170211
Rhododendron simsii chr06 5 CH_rsi_886 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000003 5 CH_sci_71 4 7 0.000000000324008
Solanum lycopersicum SL4.0ch02 5 CH_sly_324 3 5 0.000000206684
Schrenkiella parvula ch2-4 5 CH_spa_370 2 2 0.00078734
Solanum pennellii Spenn-ch02 5 CH_spe_872 2 4 0.000800563
Theobroma cacao Chromosome_2 5 CH_tca_185 4 4 0.000000000148511
Theobroma cacao Chromosome_1 5 CH_tca_642 3 14 0.000245474
Tarenaya hassleriana NW_010968505.1 5 CH_tha_220 3 20 0.000166532
Tripterygium wilfordii NC_052249.1 5 CH_twi_528 2 2 0.00083626
Utricularia gibba unitig_747 5 CH_ugi_258 2 2 0.000246144
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_709 2 2 0.000557543
Vitis vinifera chr3 5 CH_vvi_780 2 2 0.00076063
Aethionema arabicum LG-11 6 CH_aar_390 2 2 0.000547395
Actinidia chinensis Lachesis_group7 6 CH_ach_607 2 2 0.000814819
Arabidopsis lyrata scaffold_6 6 CH_aly_61 5 5 0.0000000000000079731
Brassica carinata ChrB07 6 CH_bca_667 3 3 0.000000466096
Brassica carinata ChrC03 6 CH_bca_952 3 5 0.00000465981
Brassica napus A02 6 CH_bna_676 3 4 0.00000274905
Brassica napus C02 6 CH_bna_884 3 7 0.0000240444
Citrus clementina scaffold_1 6 CH_ccl_223 4 6 0.0000000017384
Carpinus fangiana Cfa02 6 CH_cfa_556 2 2 0.000454408
Carya illinoinensis Chr08 6 CH_cil_197 4 4 0.000000000050012
Capsella rubella scaffold_6 6 CH_cru_119 4 4 0.0000000000410454
Eucalyptus grandis Chr06 6 CH_egr_1412 2 2 0.000877912
Eutrema salsugineum scaffold_6 6 CH_esa_459 2 2 0.000456899
Fragaria x ananassa Fvb2-4 6 CH_fan_358 5 38 0.000000190757
Fragaria x ananassa Fvb2-1 6 CH_fan_51 6 6 1.13472e-16
Fragaria vesca Fvb4 6 CH_fve_464 3 4 0.00000757753
Fragaria vesca Fvb2 6 CH_fve_90 6 12 0.0000000000000442472
Glycine max Gm04 6 CH_gma_409 3 4 0.00000142607
Lotus japonicus chr4 6 CH_lja_256 3 4 0.00000107369
Lonicera japonica GWHAAZE00000009 6 CH_lonja_541 3 4 0.00000120493
Malus domestica Chr05 6 CH_mdo_46 7 7 2.72376e-20
Malus domestica Chr07 6 CH_mdo_73 6 6 9.57602e-17
Oryza sativa ssp. japonica chr03 6 CH_osa_563 2 3 0.000158433
Physcomitrium patens Chr14 6 CH_ppa_248 2 2 0.000183818
Prunus persica Pp08 6 CH_ppe_329 3 3 0.0000000834721
Quercus lobata 6 6 CH_qlo_742 3 3 0.0000000399842
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_687 4 8 0.000000782095
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_900 3 3 0.0000170211
Rhododendron simsii chr06 6 CH_rsi_886 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000003 6 CH_sci_71 4 7 0.000000000324008
Solanum lycopersicum SL4.0ch02 6 CH_sly_324 3 5 0.000000206684
Schrenkiella parvula ch2-4 6 CH_spa_370 2 2 0.00078734
Solanum pennellii Spenn-ch02 6 CH_spe_872 2 4 0.000800563
Theobroma cacao Chromosome_2 6 CH_tca_185 4 4 0.000000000148511
Theobroma cacao Chromosome_1 6 CH_tca_642 3 14 0.000245474
Tarenaya hassleriana NW_010968505.1 6 CH_tha_220 3 20 0.000166532
Tripterygium wilfordii NC_052249.1 6 CH_twi_528 2 2 0.00083626
Utricularia gibba unitig_747 6 CH_ugi_258 2 2 0.000246144
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_709 2 2 0.000557543
Vitis vinifera chr3 6 CH_vvi_780 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001