Functional clusters
Information
- Type InterPro
- Description Squalene epoxidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 5 | CH_aar_390 | 2 | 2 | 0.000547395 |
| Actinidia chinensis | Lachesis_group7 | 5 | CH_ach_607 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_61 | 5 | 5 | 0.0000000000000079731 |
| Brassica carinata | ChrB07 | 5 | CH_bca_667 | 3 | 3 | 0.000000466096 |
| Brassica carinata | ChrC03 | 5 | CH_bca_952 | 3 | 5 | 0.00000465981 |
| Brassica napus | A02 | 5 | CH_bna_676 | 3 | 4 | 0.00000274905 |
| Brassica napus | C02 | 5 | CH_bna_884 | 3 | 7 | 0.0000240444 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_223 | 4 | 6 | 0.0000000017384 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_556 | 2 | 2 | 0.000454408 |
| Carya illinoinensis | Chr08 | 5 | CH_cil_197 | 4 | 4 | 0.000000000050012 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_119 | 4 | 4 | 0.0000000000410454 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1412 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_6 | 5 | CH_esa_459 | 2 | 2 | 0.000456899 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_464 | 3 | 4 | 0.00000757753 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_90 | 6 | 12 | 0.0000000000000442472 |
| Glycine max | Gm04 | 5 | CH_gma_409 | 3 | 4 | 0.00000142607 |
| Lotus japonicus | chr4 | 5 | CH_lja_256 | 3 | 4 | 0.00000107369 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_541 | 3 | 4 | 0.00000120493 |
| Malus domestica | Chr05 | 5 | CH_mdo_46 | 7 | 7 | 2.72376e-20 |
| Malus domestica | Chr07 | 5 | CH_mdo_73 | 6 | 6 | 9.57602e-17 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_563 | 2 | 3 | 0.000158433 |
| Physcomitrium patens | Chr14 | 5 | CH_ppa_248 | 2 | 2 | 0.000183818 |
| Prunus persica | Pp08 | 5 | CH_ppe_329 | 3 | 3 | 0.0000000834721 |
| Quercus lobata | 6 | 5 | CH_qlo_742 | 3 | 3 | 0.0000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_687 | 4 | 8 | 0.000000782095 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_900 | 3 | 3 | 0.0000170211 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_886 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000003 | 5 | CH_sci_71 | 4 | 7 | 0.000000000324008 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_324 | 3 | 5 | 0.000000206684 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_370 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_872 | 2 | 4 | 0.000800563 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_185 | 4 | 4 | 0.000000000148511 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_642 | 3 | 14 | 0.000245474 |
| Tarenaya hassleriana | NW_010968505.1 | 5 | CH_tha_220 | 3 | 20 | 0.000166532 |
| Tripterygium wilfordii | NC_052249.1 | 5 | CH_twi_528 | 2 | 2 | 0.00083626 |
| Utricularia gibba | unitig_747 | 5 | CH_ugi_258 | 2 | 2 | 0.000246144 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_709 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr3 | 5 | CH_vvi_780 | 2 | 2 | 0.00076063 |
| Aethionema arabicum | LG-11 | 6 | CH_aar_390 | 2 | 2 | 0.000547395 |
| Actinidia chinensis | Lachesis_group7 | 6 | CH_ach_607 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_61 | 5 | 5 | 0.0000000000000079731 |
| Brassica carinata | ChrB07 | 6 | CH_bca_667 | 3 | 3 | 0.000000466096 |
| Brassica carinata | ChrC03 | 6 | CH_bca_952 | 3 | 5 | 0.00000465981 |
| Brassica napus | A02 | 6 | CH_bna_676 | 3 | 4 | 0.00000274905 |
| Brassica napus | C02 | 6 | CH_bna_884 | 3 | 7 | 0.0000240444 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_223 | 4 | 6 | 0.0000000017384 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_556 | 2 | 2 | 0.000454408 |
| Carya illinoinensis | Chr08 | 6 | CH_cil_197 | 4 | 4 | 0.000000000050012 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_119 | 4 | 4 | 0.0000000000410454 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1412 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_6 | 6 | CH_esa_459 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_358 | 5 | 38 | 0.000000190757 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_51 | 6 | 6 | 1.13472e-16 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_464 | 3 | 4 | 0.00000757753 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_90 | 6 | 12 | 0.0000000000000442472 |
| Glycine max | Gm04 | 6 | CH_gma_409 | 3 | 4 | 0.00000142607 |
| Lotus japonicus | chr4 | 6 | CH_lja_256 | 3 | 4 | 0.00000107369 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_541 | 3 | 4 | 0.00000120493 |
| Malus domestica | Chr05 | 6 | CH_mdo_46 | 7 | 7 | 2.72376e-20 |
| Malus domestica | Chr07 | 6 | CH_mdo_73 | 6 | 6 | 9.57602e-17 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_563 | 2 | 3 | 0.000158433 |
| Physcomitrium patens | Chr14 | 6 | CH_ppa_248 | 2 | 2 | 0.000183818 |
| Prunus persica | Pp08 | 6 | CH_ppe_329 | 3 | 3 | 0.0000000834721 |
| Quercus lobata | 6 | 6 | CH_qlo_742 | 3 | 3 | 0.0000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_687 | 4 | 8 | 0.000000782095 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_900 | 3 | 3 | 0.0000170211 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_886 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000003 | 6 | CH_sci_71 | 4 | 7 | 0.000000000324008 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_324 | 3 | 5 | 0.000000206684 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_370 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_872 | 2 | 4 | 0.000800563 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_185 | 4 | 4 | 0.000000000148511 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_642 | 3 | 14 | 0.000245474 |
| Tarenaya hassleriana | NW_010968505.1 | 6 | CH_tha_220 | 3 | 20 | 0.000166532 |
| Tripterygium wilfordii | NC_052249.1 | 6 | CH_twi_528 | 2 | 2 | 0.00083626 |
| Utricularia gibba | unitig_747 | 6 | CH_ugi_258 | 2 | 2 | 0.000246144 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_709 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr3 | 6 | CH_vvi_780 | 2 | 2 | 0.00076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |