Functional clusters

Information

  • Type InterPro
  • Description Amino acid transporter, transmembrane domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_168 3 3 0.0000316531
Anthoceros agrestis Sc2ySwM_369 5 CH_aag_236 3 4 0.000126512
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_304 3 5 0.00031603
Acer truncatum chr12 5 CH_acertr_338 4 4 0.000000478422
Acer truncatum chr12 5 CH_acertr_526 5 26 0.0000589731
Actinidia chinensis Lachesis_group10 5 CH_ach_152 4 4 0.000000616999
Aquilegia oxysepala CHR05 5 CH_aox_164 4 4 0.000000301146
Aquilegia oxysepala CHR02 5 CH_aox_380 3 3 0.000166875
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 5 CH_arhy_1283 4 10 0.000805492
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_281 9 32 0.0000000000146531
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_288 8 20 0.0000000000253617
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 5 CH_arhy_626 6 20 0.00000107645
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 5 CH_arhy_696 4 4 0.00000388656
Amborella trichopoda AmTr_v1.0_scaffold00006 5 CH_atr_210 5 10 0.000000158306
Amborella trichopoda AmTr_v1.0_scaffold00166 5 CH_atr_617 3 4 0.000741114
Amborella trichopoda AmTr_v1.0_scaffold00071 5 CH_atr_87 6 7 0.00000000000790941
Amborella trichopoda AmTr_v1.0_scaffold00010 5 CH_atr_96 6 8 0.000000000031589
Brassica carinata ChrC02 5 CH_bca_1266 4 9 0.0000613008
Brassica carinata ChrC07 5 CH_bca_1696 3 3 0.000327083
Brassica carinata ChrB06 5 CH_bca_1697 3 3 0.000327083
Brassica carinata ChrC04 5 CH_bca_749 5 13 0.000000926623
Brassica napus A06 5 CH_bna_1293 3 3 0.000379921
Brassica oleracea C5 5 CH_bol_642 3 3 0.000152702
Brassica rapa A06 5 CH_bra_485 3 3 0.000282941
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_399 3 3 0.000240869
Beta vulgaris Chr2_EL10_PGA_scaffold6 5 CH_bvu_539 3 4 0.000961941
Camellia sinensis var. sinensis Chr5 5 CH_camsi_111 7 7 0.00000000000000304056
Camellia sinensis var. sinensis Chr9 5 CH_camsi_1248 5 35 0.000298701
Camellia sinensis var. sinensis Chr1 5 CH_camsi_274 6 9 0.000000000143991
Cannabis sativa NC_044377.1 5 CH_cansat_134 5 6 0.00000000102119
Capsicum annuum PGAv.1.6.scaffold623 5 CH_can_212 5 6 0.00000000255759
Capsicum annuum PGAv.1.6.scaffold473 5 CH_can_619 3 3 0.000145265
Capsicum annuum PGAv.1.6.scaffold1238 5 CH_can_620 3 3 0.000145265
Cicer arietinum L. Ca_LG5_v3 5 CH_car_323 3 3 0.000396904
Cicer arietinum L. Ca_LG2_v3 5 CH_car_324 3 3 0.000396904
Cicer arietinum L. Ca_LG2_v3 5 CH_car_325 3 3 0.000396904
Corylus avellana 1 5 CH_cav_337 4 6 0.00000330109
Corylus avellana 1 5 CH_cav_576 3 3 0.000133852
Coffea canephora chr5 5 CH_ccan_634 3 15 0.000452674
Citrus clementina scaffold_8 5 CH_ccl_584 3 3 0.000133686
Carpinus fangiana Cfa07 5 CH_cfa_446 3 3 0.000139513
Cardamine hirsuta Chr5 5 CH_chi_576 3 3 0.000198661
Cardamine hirsuta Chr8 5 CH_chi_577 3 3 0.000198661
Carya illinoinensis Chr15 5 CH_cil_386 6 26 0.000000655474
Corchorus olitorius AWUE01019136.1 5 CH_col_188 3 4 0.000417048
Carica papaya supercontig_12 5 CH_cpa_150 4 4 0.000000170255
Carica papaya supercontig_19 5 CH_cpa_423 3 3 0.000105338
Chenopodium quinoa C_Quinoa_Scaffold_3500 5 CH_cqu_637 5 19 0.0000454209
Chenopodium quinoa C_Quinoa_Scaffold_1534 5 CH_cqu_705 4 8 0.000114382
Chenopodium quinoa C_Quinoa_Scaffold_3674 5 CH_cqu_974 3 3 0.000668434
Chenopodium quinoa C_Quinoa_Scaffold_2344 5 CH_cqu_975 3 3 0.000668434
Chenopodium quinoa C_Quinoa_Scaffold_1257 5 CH_cqu_976 3 3 0.000668434
Chenopodium quinoa C_Quinoa_Scaffold_2169 5 CH_cqu_977 3 3 0.000668434
Capsella rubella scaffold_6 5 CH_cru_498 3 3 0.000157174
Cucumis sativus L. chr3 5 CH_csa_195 4 4 0.000000215382
Cucumis sativus L. chr5 5 CH_csa_358 3 3 0.000128998
Daucus carota DCARv2_Chr1 5 CH_dca_213 5 9 0.000000161905
Davidia involucrata GWHABJS00000001 5 CH_din_221 5 7 0.0000000221413
Davidia involucrata GWHABJS00000015 5 CH_din_384 4 6 0.00000843276
Davidia involucrata GWHABJS00000013 5 CH_din_441 4 8 0.0000392329
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_147 8 45 0.000000000445834
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_195 6 16 0.0000000070702
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_359 4 5 0.0000017366
Eucalyptus grandis Chr06 5 CH_egr_1134 5 24 0.000125418
Eucalyptus grandis Chr06 5 CH_egr_1311 3 3 0.000525858
Eucalyptus grandis Chr06 5 CH_egr_1312 3 3 0.000525858
Eucalyptus grandis Chr08 5 CH_egr_175 10 14 2.00986e-19
Eucalyptus grandis Chr10 5 CH_egr_454 6 7 0.0000000000507647
Eucalyptus grandis Chr03 5 CH_egr_926 4 5 0.00000637418
Eucalyptus grandis Chr06 5 CH_egr_984 4 6 0.0000190853
Erythranthe guttata scaffold_14 5 CH_egut_308 4 4 0.000000339182
Fragaria vesca Fvb2 5 CH_fve_221 5 6 0.00000000248049
Fragaria vesca Fvb2 5 CH_fve_601 3 3 0.000160629
Glycine max Gm12 5 CH_gma_968 3 3 0.000847291
Glycine max Gm13 5 CH_gma_969 3 3 0.000847291
Glycine max Gm18 5 CH_gma_970 3 3 0.000847291
Glycine max Gm19 5 CH_gma_971 3 3 0.000847291
Glycine max Gm02 5 CH_gma_972 3 3 0.000847291
Helianthus annuus HanXRQChr09 5 CH_han_1141 3 3 0.000582678
Helianthus annuus HanXRQChr08 5 CH_han_1142 3 3 0.000582678
Helianthus annuus HanXRQChr08 5 CH_han_662 4 5 0.00000640607
Helianthus annuus HanXRQChr15 5 CH_han_749 6 40 0.0000218536
Hydrangea macrophylla Hma1.2p1_0193F.1 5 CH_hma_267 3 3 0.0000918161
Lupinus albus Lalb_Chr23 5 CH_lal_287 4 4 0.00000250387
Lupinus albus Lalb_Chr18 5 CH_lal_352 4 5 0.0000124912
Lupinus albus Lalb_Chr14 5 CH_lal_804 3 3 0.000891707
Lotus japonicus chr1 5 CH_lja_252 4 4 0.000000948402
Lotus japonicus chr6 5 CH_lja_305 4 5 0.00000473302
Lotus japonicus chr1 5 CH_lja_505 3 3 0.000401878
Lonicera japonica GWHAAZE00000094 5 CH_lonja_1001 3 3 0.000294497
Lonicera japonica GWHAAZE00000007 5 CH_lonja_578 4 5 0.00000294955
Lonicera japonica GWHAAZE00000005 5 CH_lonja_600 5 16 0.0000050091
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_445 4 5 0.00000175875
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_729 3 3 0.000207645
Magnolia biondii Chr03 5 CH_mbi_223 5 5 0.000000000191215
Magnolia biondii Chr02 5 CH_mbi_255 5 6 0.00000000114603
Magnolia biondii Chr15 5 CH_mbi_836 3 3 0.000109171
Magnolia biondii Chr14 5 CH_mbi_837 3 3 0.000109171
Malus domestica Chr07 5 CH_mdo_1146 3 3 0.000253412
Malus domestica Chr05 5 CH_mdo_413 5 8 0.000000038019
Medicago truncatula chr6 5 CH_mtr_1114 4 10 0.00016294
Medicago truncatula chr6 5 CH_mtr_1115 4 10 0.00016294
Medicago truncatula chr7 5 CH_mtr_1258 3 3 0.00039717
Medicago truncatula chr3 5 CH_mtr_1259 3 3 0.00039717
Medicago truncatula chr3 5 CH_mtr_1260 3 3 0.00039717
Medicago truncatula chr3 5 CH_mtr_539 5 8 0.0000000851948
Medicago truncatula chr1 5 CH_mtr_660 4 4 0.000000783308
Medicago truncatula chr1 5 CH_mtr_886 5 21 0.0000303083
Nelumbo nucifera chr1 5 CH_nnu_184 5 10 0.0000000552631
Nelumbo nucifera chr4 5 CH_nnu_543 3 4 0.000475892
Nicotiana tabacum Nitab4.5_0000263 5 CH_nta_189 3 3 0.000108078
Nicotiana tabacum Nitab4.5_0000278 5 CH_nta_297 3 4 0.000431736
Olea europaea scaffold915 5 CH_oeu_155 4 4 0.000000180249
Punica granatum NC_045133.1 5 CH_pgr_78 7 9 0.000000000000248076
Prunus persica Pp01 5 CH_ppe_377 4 4 0.00000056683
Prunus persica Pp08 5 CH_ppe_476 4 6 0.00000847392
Prunus persica Pp05 5 CH_ppe_711 3 3 0.00027136
Prunus persica Pp03 5 CH_ppe_712 3 3 0.00027136
Pisum sativum chr6LG2 5 CH_psa_182 5 6 0.0000000225837
Pisum sativum chr1LG6 5 CH_psa_218 5 7 0.0000000788812
Pisum sativum chr6LG2 5 CH_psa_316 7 54 0.00000352237
Pisum sativum chr5LG3 5 CH_psa_707 3 3 0.000620803
Pisum sativum chr6LG2 5 CH_psa_708 3 3 0.000620803
Papaver somniferum NC_039364.1 5 CH_pso_1220 3 4 0.000638768
Papaver somniferum NC_039358.1 5 CH_pso_288 6 13 0.000000000450677
Papaver somniferum NC_039367.1 5 CH_pso_640 4 6 0.0000028574
Papaver somniferum NC_039362.1 5 CH_pso_834 4 10 0.0000398506
Populus trichocarpa Chr02 5 CH_ptr_492 4 7 0.0000219632
Populus trichocarpa Chr04 5 CH_ptr_652 3 3 0.000311691
Populus trichocarpa Chr06 5 CH_ptr_653 3 3 0.000311691
Phaseolus vulgaris Chr06 5 CH_pvu_351 4 5 0.00000576963
Phaseolus vulgaris Chr11 5 CH_pvu_640 3 3 0.000462821
Phaseolus vulgaris Chr08 5 CH_pvu_641 3 3 0.000462821
Quercus lobata 11 5 CH_qlo_185 9 11 4.93129e-19
Quercus lobata 8 5 CH_qlo_543 7 21 0.000000000336899
Quercus lobata 4 5 CH_qlo_891 4 4 0.000000501846
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_270 8 25 0.00000000000412303
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_407 6 12 0.00000000129223
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_428 6 13 0.00000000239636
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_505 6 19 0.0000000375597
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_767 4 5 0.00000242504
Rhododendron simsii chr04 5 CH_rsi_457 4 4 0.000000512263
Rhododendron simsii chr03 5 CH_rsi_604 5 22 0.0000254085
Rhododendron simsii chr11 5 CH_rsi_838 5 34 0.00026331
Salvia bowleyana GWHASIU00000001 5 CH_sbo_292 6 28 0.0000000895992
Salvia bowleyana GWHASIU00000005 5 CH_sbo_307 5 12 0.000000150304
Salix brachista GWHAAZH00000011 5 CH_sbr_297 4 5 0.000000963143
Salix brachista GWHAAZH00000016 5 CH_sbr_351 4 5 0.00000480682
Salix brachista GWHAAZH00000006 5 CH_sbr_426 4 7 0.0000335236
Salix brachista GWHAAZH00000004 5 CH_sbr_620 3 3 0.00041873
Simmondsia chinensis GWHAASQ00000015 5 CH_sci_490 3 4 0.000751219
Sechium edule LG14 5 CH_sed_56 6 6 0.00000000000282633
Sequoiadendron giganteum chr9 5 CH_sgi_1895 4 10 0.0000624832
Sequoiadendron giganteum chr1 5 CH_sgi_1896 4 10 0.0000624832
Sequoiadendron giganteum chr7 5 CH_sgi_2181 3 3 0.000186514
Sequoiadendron giganteum chr3 5 CH_sgi_2182 3 3 0.000186514
Sequoiadendron giganteum chr1 5 CH_sgi_2183 3 3 0.000186514
Sequoiadendron giganteum chr7 5 CH_sgi_469 6 6 0.000000000000740194
Sequoiadendron giganteum chr8 5 CH_sgi_728 7 27 0.000000000981978
Solanum lycopersicum SL4.0ch07 5 CH_sly_671 3 3 0.000167995
Solanum lycopersicum SL4.0ch03 5 CH_sly_672 3 3 0.000167995
Selaginella moellendorffii scaffold_86 5 CH_smo_292 3 3 0.000343094
Selaginella moellendorffii scaffold_2 5 CH_smo_85 5 8 0.000000110418
Solanum pennellii Spenn-ch02 5 CH_spe_593 3 3 0.0000736094
Solanum pennellii Spenn-ch03 5 CH_spe_746 3 4 0.000294181
Theobroma cacao Chromosome_2 5 CH_tca_710 3 4 0.000555955
Theobroma cacao Chromosome_10 5 CH_tca_711 3 4 0.000555955
Trifolium pratense Tp57577_TGAC_v2_scaf_466 5 CH_tpr_343 4 5 0.0000049778
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_664 3 3 0.000411766
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_649 3 3 0.000321283
Vigna mungo CM024075.1 5 CH_vmu_238 4 5 0.0000034925
Vanilla planifolia CM028154.1 5 CH_vpl_88 5 6 0.00000000348144
Vitis vinifera chr1 5 CH_vvi_204 7 22 0.0000000027205
Vitis vinifera chr4 5 CH_vvi_234 5 6 0.0000000168972
Vitis vinifera chr19 5 CH_vvi_358 4 4 0.00000114145
Vitis vinifera chr14 5 CH_vvi_470 4 7 0.0000397096
Vitis vinifera chr19 5 CH_vvi_664 3 3 0.000454712
Zea mays 10 5 CH_zma_342 4 9 0.0000516219
Zea mays 6 5 CH_zma_76 6 8 0.0000000000343079
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_168 3 3 0.0000316531
Anthoceros agrestis Sc2ySwM_369 6 CH_aag_236 3 4 0.000126512
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_304 3 5 0.00031603
Acer truncatum chr12 6 CH_acertr_338 4 4 0.000000478422
Acer truncatum chr12 6 CH_acertr_526 5 26 0.0000589731
Actinidia chinensis Lachesis_group10 6 CH_ach_152 4 4 0.000000616999
Aquilegia oxysepala CHR05 6 CH_aox_164 4 4 0.000000301146
Aquilegia oxysepala CHR02 6 CH_aox_380 3 3 0.000166875
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 6 CH_arhy_1283 4 10 0.000805492
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_281 9 32 0.0000000000146531
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_288 8 20 0.0000000000253617
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 6 CH_arhy_626 6 20 0.00000107645
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 6 CH_arhy_696 4 4 0.00000388656
Amborella trichopoda AmTr_v1.0_scaffold00006 6 CH_atr_210 5 10 0.000000158306
Amborella trichopoda AmTr_v1.0_scaffold00166 6 CH_atr_617 3 4 0.000741114
Amborella trichopoda AmTr_v1.0_scaffold00071 6 CH_atr_87 6 7 0.00000000000790941
Amborella trichopoda AmTr_v1.0_scaffold00010 6 CH_atr_96 6 8 0.000000000031589
Brassica carinata ChrC02 6 CH_bca_1266 4 9 0.0000613008
Brassica carinata ChrC07 6 CH_bca_1696 3 3 0.000327083
Brassica carinata ChrB06 6 CH_bca_1697 3 3 0.000327083
Brassica carinata ChrC04 6 CH_bca_749 5 13 0.000000926623
Brassica napus A06 6 CH_bna_1293 3 3 0.000379921
Brassica oleracea C5 6 CH_bol_642 3 3 0.000152702
Brassica rapa A06 6 CH_bra_485 3 3 0.000282941
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_399 3 3 0.000240869
Beta vulgaris Chr2_EL10_PGA_scaffold6 6 CH_bvu_539 3 4 0.000961941
Camellia sinensis var. sinensis Chr5 6 CH_camsi_111 7 7 0.00000000000000304056
Camellia sinensis var. sinensis Chr9 6 CH_camsi_1248 5 35 0.000298701
Camellia sinensis var. sinensis Chr1 6 CH_camsi_274 6 9 0.000000000143991
Cannabis sativa NC_044377.1 6 CH_cansat_134 5 6 0.00000000102119
Capsicum annuum PGAv.1.6.scaffold623 6 CH_can_212 5 6 0.00000000255759
Capsicum annuum PGAv.1.6.scaffold473 6 CH_can_619 3 3 0.000145265
Capsicum annuum PGAv.1.6.scaffold1238 6 CH_can_620 3 3 0.000145265
Cicer arietinum L. Ca_LG5_v3 6 CH_car_323 3 3 0.000396904
Cicer arietinum L. Ca_LG2_v3 6 CH_car_324 3 3 0.000396904
Cicer arietinum L. Ca_LG2_v3 6 CH_car_325 3 3 0.000396904
Corylus avellana 1 6 CH_cav_337 4 6 0.00000330109
Corylus avellana 1 6 CH_cav_576 3 3 0.000133852
Coffea canephora chr5 6 CH_ccan_634 3 15 0.000452674
Citrus clementina scaffold_8 6 CH_ccl_584 3 3 0.000133686
Carpinus fangiana Cfa07 6 CH_cfa_446 3 3 0.000139513
Cardamine hirsuta Chr5 6 CH_chi_576 3 3 0.000198661
Cardamine hirsuta Chr8 6 CH_chi_577 3 3 0.000198661
Carya illinoinensis Chr15 6 CH_cil_386 6 26 0.000000655474
Cucumis melo chr10 6 CH_cme_333 3 3 0.000147535
Corchorus olitorius AWUE01019136.1 6 CH_col_188 3 4 0.000417048
Carica papaya supercontig_12 6 CH_cpa_150 4 4 0.000000170255
Carica papaya supercontig_19 6 CH_cpa_423 3 3 0.000105338
Chenopodium quinoa C_Quinoa_Scaffold_3500 6 CH_cqu_637 5 19 0.0000454209
Chenopodium quinoa C_Quinoa_Scaffold_1534 6 CH_cqu_705 4 8 0.000114382
Chenopodium quinoa C_Quinoa_Scaffold_3674 6 CH_cqu_974 3 3 0.000668434
Chenopodium quinoa C_Quinoa_Scaffold_2344 6 CH_cqu_975 3 3 0.000668434
Chenopodium quinoa C_Quinoa_Scaffold_1257 6 CH_cqu_976 3 3 0.000668434
Chenopodium quinoa C_Quinoa_Scaffold_2169 6 CH_cqu_977 3 3 0.000668434
Capsella rubella scaffold_6 6 CH_cru_498 3 3 0.000157174
Cucumis sativus L. chr3 6 CH_csa_195 4 4 0.000000215382
Cucumis sativus L. chr5 6 CH_csa_358 3 3 0.000128998
Daucus carota DCARv2_Chr1 6 CH_dca_213 5 9 0.000000161905
Davidia involucrata GWHABJS00000001 6 CH_din_221 5 7 0.0000000221413
Davidia involucrata GWHABJS00000015 6 CH_din_384 4 6 0.00000843276
Davidia involucrata GWHABJS00000013 6 CH_din_441 4 8 0.0000392329
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_147 8 45 0.000000000445834
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_195 6 16 0.0000000070702
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_359 4 5 0.0000017366
Eucalyptus grandis Chr06 6 CH_egr_1134 5 24 0.000125418
Eucalyptus grandis Chr06 6 CH_egr_1311 3 3 0.000525858
Eucalyptus grandis Chr06 6 CH_egr_1312 3 3 0.000525858
Eucalyptus grandis Chr08 6 CH_egr_175 10 14 2.00986e-19
Eucalyptus grandis Chr10 6 CH_egr_454 6 7 0.0000000000507647
Eucalyptus grandis Chr03 6 CH_egr_926 4 5 0.00000637418
Eucalyptus grandis Chr06 6 CH_egr_984 4 6 0.0000190853
Erythranthe guttata scaffold_14 6 CH_egut_308 4 4 0.000000339182
Fragaria x ananassa Fvb2-4 6 CH_fan_1209 3 3 0.000792693
Fragaria x ananassa Fvb2-3 6 CH_fan_1210 3 3 0.000792693
Fragaria x ananassa Fvb2-1 6 CH_fan_1211 3 3 0.000792693
Fragaria x ananassa Fvb2-4 6 CH_fan_696 4 6 0.0000228115
Fragaria vesca Fvb2 6 CH_fve_221 5 6 0.00000000248049
Fragaria vesca Fvb2 6 CH_fve_601 3 3 0.000160629
Glycine max Gm12 6 CH_gma_968 3 3 0.000847291
Glycine max Gm13 6 CH_gma_969 3 3 0.000847291
Glycine max Gm18 6 CH_gma_970 3 3 0.000847291
Glycine max Gm19 6 CH_gma_971 3 3 0.000847291
Glycine max Gm02 6 CH_gma_972 3 3 0.000847291
Helianthus annuus HanXRQChr09 6 CH_han_1141 3 3 0.000582678
Helianthus annuus HanXRQChr08 6 CH_han_1142 3 3 0.000582678
Helianthus annuus HanXRQChr08 6 CH_han_662 4 5 0.00000640607
Helianthus annuus HanXRQChr15 6 CH_han_749 6 40 0.0000218536
Hydrangea macrophylla Hma1.2p1_0193F.1 6 CH_hma_267 3 3 0.0000918161
Lupinus albus Lalb_Chr23 6 CH_lal_287 4 4 0.00000250387
Lupinus albus Lalb_Chr18 6 CH_lal_352 4 5 0.0000124912
Lupinus albus Lalb_Chr14 6 CH_lal_804 3 3 0.000891707
Lotus japonicus chr1 6 CH_lja_252 4 4 0.000000948402
Lotus japonicus chr6 6 CH_lja_305 4 5 0.00000473302
Lotus japonicus chr1 6 CH_lja_505 3 3 0.000401878
Lonicera japonica GWHAAZE00000094 6 CH_lonja_1001 3 3 0.000294497
Lonicera japonica GWHAAZE00000007 6 CH_lonja_578 4 5 0.00000294955
Lonicera japonica GWHAAZE00000005 6 CH_lonja_600 5 16 0.0000050091
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_445 4 5 0.00000175875
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_729 3 3 0.000207645
Magnolia biondii Chr03 6 CH_mbi_223 5 5 0.000000000191215
Magnolia biondii Chr02 6 CH_mbi_255 5 6 0.00000000114603
Magnolia biondii Chr15 6 CH_mbi_836 3 3 0.000109171
Magnolia biondii Chr14 6 CH_mbi_837 3 3 0.000109171
Malus domestica Chr07 6 CH_mdo_1146 3 3 0.000253412
Malus domestica Chr05 6 CH_mdo_413 5 8 0.000000038019
Medicago truncatula chr6 6 CH_mtr_1114 4 10 0.00016294
Medicago truncatula chr6 6 CH_mtr_1115 4 10 0.00016294
Medicago truncatula chr7 6 CH_mtr_1258 3 3 0.00039717
Medicago truncatula chr3 6 CH_mtr_1259 3 3 0.00039717
Medicago truncatula chr3 6 CH_mtr_1260 3 3 0.00039717
Medicago truncatula chr3 6 CH_mtr_539 5 8 0.0000000851948
Medicago truncatula chr1 6 CH_mtr_660 4 4 0.000000783308
Medicago truncatula chr1 6 CH_mtr_886 5 21 0.0000303083
Nelumbo nucifera chr1 6 CH_nnu_184 5 10 0.0000000552631
Nelumbo nucifera chr4 6 CH_nnu_543 3 4 0.000475892
Nicotiana tabacum Nitab4.5_0000263 6 CH_nta_189 3 3 0.000108078
Nicotiana tabacum Nitab4.5_0000278 6 CH_nta_297 3 4 0.000431736
Olea europaea scaffold915 6 CH_oeu_155 4 4 0.000000180249
Punica granatum NC_045133.1 6 CH_pgr_78 7 9 0.000000000000248076
Prunus persica Pp01 6 CH_ppe_377 4 4 0.00000056683
Prunus persica Pp08 6 CH_ppe_476 4 6 0.00000847392
Prunus persica Pp05 6 CH_ppe_711 3 3 0.00027136
Prunus persica Pp03 6 CH_ppe_712 3 3 0.00027136
Pisum sativum chr6LG2 6 CH_psa_182 5 6 0.0000000225837
Pisum sativum chr1LG6 6 CH_psa_218 5 7 0.0000000788812
Pisum sativum chr6LG2 6 CH_psa_316 7 54 0.00000352237
Pisum sativum chr5LG3 6 CH_psa_707 3 3 0.000620803
Pisum sativum chr6LG2 6 CH_psa_708 3 3 0.000620803
Papaver somniferum NC_039364.1 6 CH_pso_1220 3 4 0.000638768
Papaver somniferum NC_039358.1 6 CH_pso_288 6 13 0.000000000450677
Papaver somniferum NC_039367.1 6 CH_pso_640 4 6 0.0000028574
Papaver somniferum NC_039362.1 6 CH_pso_834 4 10 0.0000398506
Populus trichocarpa Chr02 6 CH_ptr_492 4 7 0.0000219632
Populus trichocarpa Chr04 6 CH_ptr_652 3 3 0.000311691
Populus trichocarpa Chr06 6 CH_ptr_653 3 3 0.000311691
Phaseolus vulgaris Chr06 6 CH_pvu_351 4 5 0.00000576963
Phaseolus vulgaris Chr11 6 CH_pvu_640 3 3 0.000462821
Phaseolus vulgaris Chr08 6 CH_pvu_641 3 3 0.000462821
Quercus lobata 11 6 CH_qlo_185 9 11 4.93129e-19
Quercus lobata 8 6 CH_qlo_543 7 21 0.000000000336899
Quercus lobata 4 6 CH_qlo_891 4 4 0.000000501846
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_270 8 25 0.00000000000412303
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_407 6 12 0.00000000129223
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_428 6 13 0.00000000239636
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_505 6 19 0.0000000375597
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_767 4 5 0.00000242504
Rhododendron simsii chr04 6 CH_rsi_457 4 4 0.000000512263
Rhododendron simsii chr03 6 CH_rsi_604 5 22 0.0000254085
Rhododendron simsii chr11 6 CH_rsi_838 5 34 0.00026331
Salvia bowleyana GWHASIU00000001 6 CH_sbo_292 6 28 0.0000000895992
Salvia bowleyana GWHASIU00000005 6 CH_sbo_307 5 12 0.000000150304
Salix brachista GWHAAZH00000011 6 CH_sbr_297 4 5 0.000000963143
Salix brachista GWHAAZH00000016 6 CH_sbr_351 4 5 0.00000480682
Salix brachista GWHAAZH00000006 6 CH_sbr_426 4 7 0.0000335236
Salix brachista GWHAAZH00000004 6 CH_sbr_620 3 3 0.00041873
Simmondsia chinensis GWHAASQ00000015 6 CH_sci_490 3 4 0.000751219
Sechium edule LG14 6 CH_sed_56 6 6 0.00000000000282633
Sequoiadendron giganteum chr9 6 CH_sgi_1895 4 10 0.0000624832
Sequoiadendron giganteum chr1 6 CH_sgi_1896 4 10 0.0000624832
Sequoiadendron giganteum chr7 6 CH_sgi_2181 3 3 0.000186514
Sequoiadendron giganteum chr3 6 CH_sgi_2182 3 3 0.000186514
Sequoiadendron giganteum chr1 6 CH_sgi_2183 3 3 0.000186514
Sequoiadendron giganteum chr7 6 CH_sgi_469 6 6 0.000000000000740194
Sequoiadendron giganteum chr8 6 CH_sgi_728 7 27 0.000000000981978
Solanum lycopersicum SL4.0ch07 6 CH_sly_671 3 3 0.000167995
Solanum lycopersicum SL4.0ch03 6 CH_sly_672 3 3 0.000167995
Selaginella moellendorffii scaffold_86 6 CH_smo_292 3 3 0.000343094
Selaginella moellendorffii scaffold_2 6 CH_smo_85 5 8 0.000000110418
Solanum pennellii Spenn-ch02 6 CH_spe_593 3 3 0.0000736094
Solanum pennellii Spenn-ch03 6 CH_spe_746 3 4 0.000294181
Theobroma cacao Chromosome_2 6 CH_tca_710 3 4 0.000555955
Theobroma cacao Chromosome_10 6 CH_tca_711 3 4 0.000555955
Trifolium pratense Tp57577_TGAC_v2_scaf_466 6 CH_tpr_343 4 5 0.0000049778
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_664 3 3 0.000411766
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_649 3 3 0.000321283
Vigna mungo CM024075.1 6 CH_vmu_238 4 5 0.0000034925
Vanilla planifolia CM028154.1 6 CH_vpl_88 5 6 0.00000000348144
Vitis vinifera chr1 6 CH_vvi_204 7 22 0.0000000027205
Vitis vinifera chr4 6 CH_vvi_234 5 6 0.0000000168972
Vitis vinifera chr19 6 CH_vvi_358 4 4 0.00000114145
Vitis vinifera chr14 6 CH_vvi_470 4 7 0.0000397096
Vitis vinifera chr19 6 CH_vvi_664 3 3 0.000454712
Zea mays 10 6 CH_zma_342 4 9 0.0000516219
Zea mays 6 6 CH_zma_76 6 8 0.0000000000343079

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001