Functional clusters
Information
- Type InterPro
- Description Very-long-chain 3-ketoacyl-CoA synthase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_365 | 2 | 2 | 0.000802568 |
| Aethionema arabicum | LG-8 | 5 | CH_aar_130 | 4 | 4 | 0.0000000288218 |
| Acer truncatum | chr4 | 5 | CH_acertr_4 | 13 | 13 | 2.76287e-34 |
| Amborella trichopoda | AmTr_v1.0_scaffold00014 | 5 | CH_atr_198 | 4 | 4 | 0.0000000540907 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 5 | CH_atr_21 | 13 | 30 | 3.95561e-27 |
| Amborella trichopoda | AmTr_v1.0_scaffold00025 | 5 | CH_atr_347 | 3 | 3 | 0.0000469544 |
| Brassica napus | C03 | 5 | CH_bna_912 | 3 | 3 | 0.0000295381 |
| Brassica oleracea | C7 | 5 | CH_bol_512 | 4 | 18 | 0.00003224 |
| Cicer arietinum L. | Ca_LG3_v3 | 5 | CH_car_140 | 3 | 3 | 0.0000074147 |
| Coffea canephora | chr3 | 5 | CH_ccan_180 | 4 | 40 | 0.000000126618 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_117 | 6 | 7 | 0.0000000000000436419 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_404 | 3 | 3 | 0.0000110367 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_283 | 4 | 4 | 0.0000000224804 |
| Corchorus olitorius | AWUE01015392.1 | 5 | CH_col_221 | 2 | 2 | 0.000876296 |
| Carica papaya | supercontig_58 | 5 | CH_cpa_232 | 3 | 4 | 0.0000119257 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_250 | 3 | 3 | 0.00000380481 |
| Daucus carota | DCARv2_Chr9 | 5 | CH_dca_452 | 3 | 4 | 0.0000799044 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_106 | 5 | 6 | 0.0000000000259897 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_449 | 3 | 3 | 0.0000122626 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_450 | 3 | 3 | 0.0000122626 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_956 | 3 | 3 | 0.0000118182 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_131 | 5 | 5 | 0.00000000000326945 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_422 | 3 | 3 | 0.00000236862 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_749 | 3 | 3 | 0.0000250535 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_370 | 3 | 3 | 0.0000126105 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_371 | 3 | 3 | 0.0000126105 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_407 | 4 | 8 | 0.000000675932 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_807 | 3 | 7 | 0.000505779 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_1281 | 3 | 13 | 0.000977432 |
| Magnolia biondii | Chr07 | 5 | CH_mbi_581 | 4 | 17 | 0.0000031574 |
| Malus domestica | Chr07 | 5 | CH_mdo_321 | 5 | 12 | 0.00000000461474 |
| Manihot esculenta | Chromosome02 | 5 | CH_mes_172 | 5 | 6 | 0.0000000000332287 |
| Marchantia polymorpha | scaffold_55 | 5 | CH_mpo_227 | 2 | 3 | 0.000993889 |
| Medicago truncatula | chr4 | 5 | CH_mtr_572 | 5 | 24 | 0.000000153007 |
| Nicotiana tabacum | Nitab4.5_0000187 | 5 | CH_nta_47 | 4 | 4 | 0.000000000832447 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_342 | 3 | 3 | 0.00000818402 |
| Prunus persica | Pp02 | 5 | CH_ppe_497 | 3 | 3 | 0.0000128547 |
| Prunus persica | Pp01 | 5 | CH_ppe_498 | 3 | 3 | 0.0000128547 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_358 | 6 | 36 | 0.00000000726862 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_400 | 5 | 15 | 0.00000002009 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_806 | 4 | 17 | 0.0000276774 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_62 | 8 | 9 | 6.42663e-20 |
| Quercus lobata | 8 | 5 | CH_qlo_98 | 10 | 13 | 6.92191e-25 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_226 | 5 | 6 | 0.0000000000262488 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_64 | 7 | 8 | 8.02809e-17 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1470 | 3 | 3 | 0.000011662 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_240 | 4 | 4 | 0.00000000644632 |
| Schrenkiella parvula | ch3-5 | 5 | CH_spa_315 | 3 | 7 | 0.000431877 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_484 | 3 | 4 | 0.0000182745 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_575 | 3 | 5 | 0.0000456707 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_258 | 4 | 4 | 0.00000000429028 |
| Trochodendron aralioides | group16 | 5 | CH_tar_46 | 7 | 10 | 5.23279e-16 |
| Trochodendron aralioides | group1 | 5 | CH_tar_561 | 3 | 4 | 0.0000708081 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_57 | 7 | 8 | 4.89964e-18 |
| Tarenaya hassleriana | NW_010966177.1 | 5 | CH_tha_84 | 4 | 4 | 0.0000000179427 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_361 | 3 | 3 | 0.000008329 |
| Utricularia gibba | unitig_46 | 5 | CH_ugi_294 | 3 | 4 | 0.000340373 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_297 | 3 | 3 | 0.0000145035 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_365 | 2 | 2 | 0.000802568 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_130 | 4 | 4 | 0.0000000288218 |
| Acer truncatum | chr4 | 6 | CH_acertr_4 | 13 | 13 | 2.76287e-34 |
| Amborella trichopoda | AmTr_v1.0_scaffold00014 | 6 | CH_atr_198 | 4 | 4 | 0.0000000540907 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 6 | CH_atr_21 | 13 | 30 | 3.95561e-27 |
| Amborella trichopoda | AmTr_v1.0_scaffold00025 | 6 | CH_atr_347 | 3 | 3 | 0.0000469544 |
| Brassica napus | C03 | 6 | CH_bna_912 | 3 | 3 | 0.0000295381 |
| Brassica oleracea | C7 | 6 | CH_bol_512 | 4 | 18 | 0.00003224 |
| Cicer arietinum L. | Ca_LG3_v3 | 6 | CH_car_140 | 3 | 3 | 0.0000074147 |
| Coffea canephora | chr3 | 6 | CH_ccan_180 | 4 | 40 | 0.000000126618 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_117 | 6 | 7 | 0.0000000000000436419 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_404 | 3 | 3 | 0.0000110367 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_283 | 4 | 4 | 0.0000000224804 |
| Cucumis melo | chr06 | 6 | CH_cme_248 | 3 | 4 | 0.0000121459 |
| Corchorus olitorius | AWUE01015392.1 | 6 | CH_col_221 | 2 | 2 | 0.000876296 |
| Carica papaya | supercontig_58 | 6 | CH_cpa_232 | 3 | 4 | 0.0000119257 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_250 | 3 | 3 | 0.00000380481 |
| Daucus carota | DCARv2_Chr9 | 6 | CH_dca_452 | 3 | 4 | 0.0000799044 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_106 | 5 | 6 | 0.0000000000259897 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_449 | 3 | 3 | 0.0000122626 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_450 | 3 | 3 | 0.0000122626 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_956 | 3 | 3 | 0.0000118182 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_131 | 5 | 5 | 0.00000000000326945 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_1266 | 3 | 7 | 0.000859547 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_422 | 3 | 3 | 0.00000236862 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_749 | 3 | 3 | 0.0000250535 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_370 | 3 | 3 | 0.0000126105 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_371 | 3 | 3 | 0.0000126105 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_407 | 4 | 8 | 0.000000675932 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_807 | 3 | 7 | 0.000505779 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_1281 | 3 | 13 | 0.000977432 |
| Magnolia biondii | Chr07 | 6 | CH_mbi_581 | 4 | 17 | 0.0000031574 |
| Malus domestica | Chr07 | 6 | CH_mdo_321 | 5 | 12 | 0.00000000461474 |
| Manihot esculenta | Chromosome02 | 6 | CH_mes_172 | 5 | 6 | 0.0000000000332287 |
| Marchantia polymorpha | scaffold_55 | 6 | CH_mpo_227 | 2 | 3 | 0.000993889 |
| Medicago truncatula | chr4 | 6 | CH_mtr_572 | 5 | 24 | 0.000000153007 |
| Nicotiana tabacum | Nitab4.5_0000187 | 6 | CH_nta_47 | 4 | 4 | 0.000000000832447 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_342 | 3 | 3 | 0.00000818402 |
| Prunus persica | Pp02 | 6 | CH_ppe_497 | 3 | 3 | 0.0000128547 |
| Prunus persica | Pp01 | 6 | CH_ppe_498 | 3 | 3 | 0.0000128547 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_358 | 6 | 36 | 0.00000000726862 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_400 | 5 | 15 | 0.00000002009 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_806 | 4 | 17 | 0.0000276774 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_62 | 8 | 9 | 6.42663e-20 |
| Quercus lobata | 8 | 6 | CH_qlo_98 | 10 | 13 | 6.92191e-25 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_226 | 5 | 6 | 0.0000000000262488 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_64 | 7 | 8 | 8.02809e-17 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1470 | 3 | 3 | 0.000011662 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_240 | 4 | 4 | 0.00000000644632 |
| Schrenkiella parvula | ch3-5 | 6 | CH_spa_315 | 3 | 7 | 0.000431877 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_484 | 3 | 4 | 0.0000182745 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_575 | 3 | 5 | 0.0000456707 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_258 | 4 | 4 | 0.00000000429028 |
| Trochodendron aralioides | group16 | 6 | CH_tar_46 | 7 | 10 | 5.23279e-16 |
| Trochodendron aralioides | group1 | 6 | CH_tar_561 | 3 | 4 | 0.0000708081 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_57 | 7 | 8 | 4.89964e-18 |
| Tarenaya hassleriana | NW_010966177.1 | 6 | CH_tha_84 | 4 | 4 | 0.0000000179427 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_361 | 3 | 3 | 0.000008329 |
| Utricularia gibba | unitig_46 | 6 | CH_ugi_294 | 3 | 4 | 0.000340373 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_297 | 3 | 3 | 0.0000145035 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |