Functional clusters
Information
- Type InterPro
- Description Thioredoxin-like fold
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_102833_HRSCAF_103052 | 5 | CH_ama_49 | 3 | 3 | 0.000000223035 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_219 | 3 | 3 | 0.000000575799 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_620 | 3 | 3 | 0.000000693893 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_101 | 4 | 4 | 0.0000000000594632 |
| Ceratophyllum demersum | 5 | 5 | CH_cde_123 | 3 | 4 | 0.00000130978 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_148 | 4 | 5 | 0.000000000456093 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_94 | 4 | 7 | 0.0000000523623 |
| Carica papaya | supercontig_69 | 5 | CH_cpa_184 | 3 | 3 | 0.000000759191 |
| Chlamydomonas reinhardtii | chromosome_2 | 5 | CH_cre_188 | 2 | 2 | 0.0006824 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_106 | 4 | 4 | 0.000000000366504 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_240 | 6 | 7 | 1.85624e-16 |
| Erythranthe guttata | scaffold_5 | 5 | CH_egut_726 | 2 | 2 | 0.000728147 |
| Glycine max | Gm04 | 5 | CH_gma_421 | 3 | 4 | 0.0000019014 |
| Hydrangea macrophylla | Hma1.2p1_0160F.1 | 5 | CH_hma_643 | 2 | 2 | 0.000666519 |
| Malus domestica | Chr16 | 5 | CH_mdo_290 | 4 | 5 | 0.00000000148849 |
| Olea europaea | scaffold1119 | 5 | CH_oeu_535 | 2 | 2 | 0.000320273 |
| Petunia axillaris | Peaxi162Scf00338 | 5 | CH_pax_284 | 3 | 5 | 0.00000259807 |
| Prunus persica | Pp01 | 5 | CH_ppe_388 | 3 | 3 | 0.000000701166 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_30 | 9 | 9 | 4.29625e-27 |
| Quercus lobata | 3 | 5 | CH_qlo_115 | 8 | 10 | 1.78429e-23 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_229 | 4 | 4 | 0.0000000000282183 |
| Simmondsia chinensis | GWHAASQ00000004 | 5 | CH_sci_165 | 3 | 3 | 0.000000608964 |
| Sechium edule | LG10 | 5 | CH_sed_203 | 3 | 3 | 0.000000916174 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_467 | 5 | 7 | 0.000000000000702393 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_893 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_852 | 2 | 2 | 0.000667186 |
| Selenicereus undatus | Scaffold_19641 | 5 | CH_sun_50 | 4 | 6 | 0.00000000569536 |
| Trochodendron aralioides | group13 | 5 | CH_tar_314 | 3 | 3 | 0.000000454168 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_428 | 3 | 6 | 0.00000562982 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_108 | 4 | 4 | 0.000000000168524 |
| Vitis vinifera | chr1 | 5 | CH_vvi_135 | 5 | 9 | 0.0000000000039839 |
| Avicennia marina | ScioBoG_102833_HRSCAF_103052 | 6 | CH_ama_49 | 3 | 3 | 0.000000223035 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_219 | 3 | 3 | 0.000000575799 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_620 | 3 | 3 | 0.000000693893 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_101 | 4 | 4 | 0.0000000000594632 |
| Ceratophyllum demersum | 5 | 6 | CH_cde_123 | 3 | 4 | 0.00000130978 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_148 | 4 | 5 | 0.000000000456093 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_94 | 4 | 7 | 0.0000000523623 |
| Cucumis melo | chr09 | 6 | CH_cme_95 | 4 | 4 | 0.000000000187059 |
| Carica papaya | supercontig_69 | 6 | CH_cpa_184 | 3 | 3 | 0.000000759191 |
| Chlamydomonas reinhardtii | chromosome_2 | 6 | CH_cre_188 | 2 | 2 | 0.0006824 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_106 | 4 | 4 | 0.000000000366504 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_240 | 6 | 7 | 1.85624e-16 |
| Erythranthe guttata | scaffold_5 | 6 | CH_egut_726 | 2 | 2 | 0.000728147 |
| Glycine max | Gm04 | 6 | CH_gma_421 | 3 | 4 | 0.0000019014 |
| Hydrangea macrophylla | Hma1.2p1_0160F.1 | 6 | CH_hma_643 | 2 | 2 | 0.000666519 |
| Malus domestica | Chr16 | 6 | CH_mdo_290 | 4 | 5 | 0.00000000148849 |
| Olea europaea | scaffold1119 | 6 | CH_oeu_535 | 2 | 2 | 0.000320273 |
| Petunia axillaris | Peaxi162Scf00338 | 6 | CH_pax_284 | 3 | 5 | 0.00000259807 |
| Prunus persica | Pp01 | 6 | CH_ppe_388 | 3 | 3 | 0.000000701166 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_30 | 9 | 9 | 4.29625e-27 |
| Quercus lobata | 3 | 6 | CH_qlo_115 | 8 | 10 | 1.78429e-23 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_229 | 4 | 4 | 0.0000000000282183 |
| Simmondsia chinensis | GWHAASQ00000004 | 6 | CH_sci_165 | 3 | 3 | 0.000000608964 |
| Sechium edule | LG10 | 6 | CH_sed_203 | 3 | 3 | 0.000000916174 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_467 | 5 | 7 | 0.000000000000702393 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_893 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_852 | 2 | 2 | 0.000667186 |
| Selenicereus undatus | Scaffold_19641 | 6 | CH_sun_50 | 4 | 6 | 0.00000000569536 |
| Trochodendron aralioides | group13 | 6 | CH_tar_314 | 3 | 3 | 0.000000454168 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_428 | 3 | 6 | 0.00000562982 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_108 | 4 | 4 | 0.000000000168524 |
| Vitis vinifera | chr1 | 6 | CH_vvi_135 | 5 | 9 | 0.0000000000039839 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |