Functional clusters
Information
- Type InterPro
- Description Modifying wall lignin-1/2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_4119_HRSCAF_4138 | 5 | CH_ama_248 | 3 | 12 | 0.000889833 |
| Brassica carinata | ChrB02 | 5 | CH_bca_174 | 5 | 5 | 0.00000000000544822 |
| Brassica carinata | Contig74 | 5 | CH_bca_784 | 4 | 9 | 0.00000125651 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 5 | CH_cqu_572 | 3 | 3 | 0.0000151377 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_573 | 3 | 3 | 0.0000151377 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_466 | 3 | 6 | 0.0000454504 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_236 | 5 | 5 | 0.00000000000584858 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_281 | 5 | 7 | 0.000000000122702 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_86 | 6 | 6 | 0.00000000000000134149 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_620 | 3 | 3 | 0.00000396695 |
| Lupinus albus | Lalb_Chr14 | 5 | CH_lal_25 | 8 | 12 | 1.34673e-18 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_436 | 3 | 3 | 0.00000144258 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_787 | 3 | 12 | 0.00031669 |
| Medicago truncatula | chr1 | 5 | CH_mtr_744 | 3 | 3 | 0.00000245368 |
| Oryza sativa ssp. japonica | chr05 | 5 | CH_osa_77 | 6 | 9 | 0.000000000000021053 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_112 | 6 | 8 | 4.92047e-16 |
| Quercus lobata | 9 | 5 | CH_qlo_722 | 4 | 6 | 0.0000000299853 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_192 | 5 | 5 | 0.00000000000201676 |
| Simmondsia chinensis | GWHAASQ00000003 | 5 | CH_sci_167 | 4 | 9 | 0.000000712166 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1420 | 3 | 3 | 0.00000630447 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_243 | 7 | 8 | 2.06428e-18 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_119 | 4 | 4 | 0.00000000251885 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_33 | 7 | 7 | 5.89958e-18 |
| Avicennia marina | ScioBoG_4119_HRSCAF_4138 | 6 | CH_ama_248 | 3 | 12 | 0.000889833 |
| Brassica carinata | ChrB02 | 6 | CH_bca_174 | 5 | 5 | 0.00000000000544822 |
| Brassica carinata | Contig74 | 6 | CH_bca_784 | 4 | 9 | 0.00000125651 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 6 | CH_cqu_572 | 3 | 3 | 0.0000151377 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_573 | 3 | 3 | 0.0000151377 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_466 | 3 | 6 | 0.0000454504 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_236 | 5 | 5 | 0.00000000000584858 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_281 | 5 | 7 | 0.000000000122702 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_86 | 6 | 6 | 0.00000000000000134149 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_620 | 3 | 3 | 0.00000396695 |
| Lupinus albus | Lalb_Chr14 | 6 | CH_lal_25 | 8 | 12 | 1.34673e-18 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_436 | 3 | 3 | 0.00000144258 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_787 | 3 | 12 | 0.00031669 |
| Medicago truncatula | chr1 | 6 | CH_mtr_744 | 3 | 3 | 0.00000245368 |
| Oryza sativa ssp. japonica | chr05 | 6 | CH_osa_77 | 6 | 9 | 0.000000000000021053 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_112 | 6 | 8 | 4.92047e-16 |
| Quercus lobata | 9 | 6 | CH_qlo_722 | 4 | 6 | 0.0000000299853 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_192 | 5 | 5 | 0.00000000000201676 |
| Simmondsia chinensis | GWHAASQ00000003 | 6 | CH_sci_167 | 4 | 9 | 0.000000712166 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1420 | 3 | 3 | 0.00000630447 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_243 | 7 | 8 | 2.06428e-18 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_119 | 4 | 4 | 0.00000000251885 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_33 | 7 | 7 | 5.89958e-18 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |