Functional clusters
Information
- Type InterPro
- Description (S)-ureidoglycine aminohydrolase, cupin-3 domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 5 | CH_aar_442 | 2 | 2 | 0.000912326 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_679 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_327 | 3 | 12 | 0.00000947521 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1057 | 3 | 5 | 0.0000105523 |
| Brassica carinata | ChrB01 | 5 | CH_bca_306 | 4 | 5 | 0.00000000107165 |
| Brassica carinata | ChrB06 | 5 | CH_bca_760 | 3 | 3 | 0.00000105557 |
| Brassica napus | A03 | 5 | CH_bna_206 | 4 | 4 | 0.000000000092956 |
| Brassica napus | C03 | 5 | CH_bna_747 | 3 | 5 | 0.0000058901 |
| Brassica rapa | A03 | 5 | CH_bra_216 | 3 | 4 | 0.00000132688 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_492 | 2 | 2 | 0.000227204 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_286 | 3 | 4 | 0.000000641451 |
| Eutrema salsugineum | scaffold_3 | 5 | CH_esa_180 | 3 | 3 | 0.000000173971 |
| Medicago truncatula | chr6 | 5 | CH_mtr_271 | 5 | 13 | 0.0000000000069265 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_616 | 2 | 2 | 0.000750356 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_623 | 3 | 7 | 0.00000223787 |
| Sechium edule | LG10 | 5 | CH_sed_146 | 3 | 3 | 0.0000000763478 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_262 | 3 | 3 | 0.0000000206706 |
| Schrenkiella parvula | ch6-2 | 5 | CH_spa_365 | 2 | 2 | 0.00078734 |
| Tarenaya hassleriana | NW_010960187.1 | 5 | CH_tha_300 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052243.1 | 5 | CH_twi_301 | 3 | 9 | 0.0000136981 |
| Vitis vinifera | chr18 | 5 | CH_vvi_687 | 2 | 2 | 0.000456378 |
| Zea mays | 2 | 5 | CH_zma_240 | 3 | 5 | 0.00000329331 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_442 | 2 | 2 | 0.000912326 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_679 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_327 | 3 | 12 | 0.00000947521 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1057 | 3 | 5 | 0.0000105523 |
| Brassica carinata | ChrB01 | 6 | CH_bca_306 | 4 | 5 | 0.00000000107165 |
| Brassica carinata | ChrB06 | 6 | CH_bca_760 | 3 | 3 | 0.00000105557 |
| Brassica napus | A03 | 6 | CH_bna_206 | 4 | 4 | 0.000000000092956 |
| Brassica napus | C03 | 6 | CH_bna_747 | 3 | 5 | 0.0000058901 |
| Brassica rapa | A03 | 6 | CH_bra_216 | 3 | 4 | 0.00000132688 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_492 | 2 | 2 | 0.000227204 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_286 | 3 | 4 | 0.000000641451 |
| Eutrema salsugineum | scaffold_3 | 6 | CH_esa_180 | 3 | 3 | 0.000000173971 |
| Medicago truncatula | chr6 | 6 | CH_mtr_271 | 5 | 13 | 0.0000000000069265 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_616 | 2 | 2 | 0.000750356 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_623 | 3 | 7 | 0.00000223787 |
| Sechium edule | LG10 | 6 | CH_sed_146 | 3 | 3 | 0.0000000763478 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_262 | 3 | 3 | 0.0000000206706 |
| Schrenkiella parvula | ch6-2 | 6 | CH_spa_365 | 2 | 2 | 0.00078734 |
| Tarenaya hassleriana | NW_010960187.1 | 6 | CH_tha_300 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052243.1 | 6 | CH_twi_301 | 3 | 9 | 0.0000136981 |
| Vitis vinifera | chr18 | 6 | CH_vvi_687 | 2 | 2 | 0.000456378 |
| Zea mays | 2 | 6 | CH_zma_240 | 3 | 5 | 0.00000329331 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |