Functional clusters
Information
- Type InterPro
- Description Protein of unknown function DUF677
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_330 | 2 | 2 | 0.000481541 |
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_331 | 2 | 2 | 0.000481541 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_345 | 3 | 3 | 0.00000444386 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_346 | 3 | 3 | 0.00000444386 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_208 | 5 | 52 | 0.0000000806641 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_326 | 3 | 5 | 0.00000836928 |
| Brassica carinata | ChrB02 | 5 | CH_bca_927 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB03 | 5 | CH_bca_928 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC02 | 5 | CH_bca_977 | 4 | 20 | 0.00000578592 |
| Brassica napus | A07 | 5 | CH_bna_279 | 4 | 4 | 0.00000000113015 |
| Brassica napus | C06 | 5 | CH_bna_333 | 4 | 5 | 0.00000000564935 |
| Brassica napus | C07 | 5 | CH_bna_620 | 4 | 15 | 0.00000153847 |
| Brassica oleracea | C7 | 5 | CH_bol_341 | 3 | 3 | 0.00000130772 |
| Brassica oleracea | C6 | 5 | CH_bol_95 | 5 | 9 | 0.00000000000923576 |
| Brassica rapa | A07 | 5 | CH_bra_84 | 4 | 4 | 0.00000000043206 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_608 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_126 | 5 | 5 | 0.000000000000142497 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_172 | 4 | 4 | 0.00000000358854 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_64 | 6 | 6 | 8.73089e-16 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_878 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_170 | 10 | 34 | 9.71895e-20 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_516 | 5 | 8 | 0.000000000483571 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_958 | 5 | 47 | 0.0000129443 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_979 | 3 | 3 | 0.0000168332 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_127 | 6 | 25 | 0.00000000000483387 |
| Gossypium hirsutum | A02 | 5 | CH_ghi_139 | 6 | 6 | 2.24888e-16 |
| Gossypium hirsutum | D03 | 5 | CH_ghi_161 | 6 | 8 | 0.0000000000000062931 |
| Gossypium raimondii | Chr03 | 5 | CH_gra_75 | 6 | 6 | 7.98141e-17 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_673 | 3 | 6 | 0.00000738883 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_272 | 4 | 4 | 0.0000000000811965 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_137 | 5 | 6 | 0.000000000000322185 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_288 | 4 | 6 | 0.00000000368448 |
| Olea europaea | chr3 | 5 | CH_oeu_261 | 3 | 6 | 0.0000187942 |
| Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_729 | 3 | 25 | 0.00053739 |
| Petunia axillaris | Peaxi162Scf00078 | 5 | CH_pax_120 | 4 | 5 | 0.00000000172364 |
| Petunia axillaris | Peaxi162Scf00013 | 5 | CH_pax_333 | 3 | 5 | 0.0000122454 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_177 | 4 | 5 | 0.000000008648 |
| Physcomitrium patens | Chr09 | 5 | CH_ppa_150 | 2 | 2 | 0.0000612726 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_264 | 3 | 3 | 0.000000489798 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_388 | 3 | 3 | 0.00000110251 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1780 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_182 | 8 | 54 | 0.00000000000000653884 |
| Simmondsia chinensis | GWHAASQ00000016 | 5 | CH_sci_233 | 4 | 40 | 0.000021162 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_233 | 7 | 10 | 8.12585e-19 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_863 | 4 | 6 | 0.00000000709841 |
| Selaginella moellendorffii | scaffold_0 | 5 | CH_smo_155 | 3 | 7 | 0.00000914886 |
| Trochodendron aralioides | group5 | 5 | CH_tar_312 | 3 | 3 | 0.000000454168 |
| Tarenaya hassleriana | NW_010965122.1 | 5 | CH_tha_85 | 6 | 59 | 0.0000000204658 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_68 | 5 | 6 | 0.000000000000422791 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_330 | 2 | 2 | 0.000481541 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_331 | 2 | 2 | 0.000481541 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_345 | 3 | 3 | 0.00000444386 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_346 | 3 | 3 | 0.00000444386 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_208 | 5 | 52 | 0.0000000806641 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_326 | 3 | 5 | 0.00000836928 |
| Brassica carinata | ChrB02 | 6 | CH_bca_927 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB03 | 6 | CH_bca_928 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC02 | 6 | CH_bca_977 | 4 | 20 | 0.00000578592 |
| Brassica napus | A07 | 6 | CH_bna_279 | 4 | 4 | 0.00000000113015 |
| Brassica napus | C06 | 6 | CH_bna_333 | 4 | 5 | 0.00000000564935 |
| Brassica napus | C07 | 6 | CH_bna_620 | 4 | 15 | 0.00000153847 |
| Brassica oleracea | C7 | 6 | CH_bol_341 | 3 | 3 | 0.00000130772 |
| Brassica oleracea | C6 | 6 | CH_bol_95 | 5 | 9 | 0.00000000000923576 |
| Brassica rapa | A07 | 6 | CH_bra_84 | 4 | 4 | 0.00000000043206 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_608 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_126 | 5 | 5 | 0.000000000000142497 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_172 | 4 | 4 | 0.00000000358854 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_64 | 6 | 6 | 8.73089e-16 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_878 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_170 | 10 | 34 | 9.71895e-20 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_516 | 5 | 8 | 0.000000000483571 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_958 | 5 | 47 | 0.0000129443 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_979 | 3 | 3 | 0.0000168332 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_330 | 4 | 8 | 0.000000109314 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_491 | 4 | 15 | 0.00000212762 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_127 | 6 | 25 | 0.00000000000483387 |
| Gossypium hirsutum | A02 | 6 | CH_ghi_139 | 6 | 6 | 2.24888e-16 |
| Gossypium hirsutum | D03 | 6 | CH_ghi_161 | 6 | 8 | 0.0000000000000062931 |
| Gossypium raimondii | Chr03 | 6 | CH_gra_75 | 6 | 6 | 7.98141e-17 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_673 | 3 | 6 | 0.00000738883 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_272 | 4 | 4 | 0.0000000000811965 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_137 | 5 | 6 | 0.000000000000322185 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_288 | 4 | 6 | 0.00000000368448 |
| Olea europaea | chr3 | 6 | CH_oeu_261 | 3 | 6 | 0.0000187942 |
| Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_729 | 3 | 25 | 0.00053739 |
| Petunia axillaris | Peaxi162Scf00078 | 6 | CH_pax_120 | 4 | 5 | 0.00000000172364 |
| Petunia axillaris | Peaxi162Scf00013 | 6 | CH_pax_333 | 3 | 5 | 0.0000122454 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_177 | 4 | 5 | 0.000000008648 |
| Physcomitrium patens | Chr09 | 6 | CH_ppa_150 | 2 | 2 | 0.0000612726 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_264 | 3 | 3 | 0.000000489798 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_388 | 3 | 3 | 0.00000110251 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1780 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_182 | 8 | 54 | 0.00000000000000653884 |
| Simmondsia chinensis | GWHAASQ00000016 | 6 | CH_sci_233 | 4 | 40 | 0.000021162 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_233 | 7 | 10 | 8.12585e-19 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_863 | 4 | 6 | 0.00000000709841 |
| Selaginella moellendorffii | scaffold_0 | 6 | CH_smo_155 | 3 | 7 | 0.00000914886 |
| Trochodendron aralioides | group5 | 6 | CH_tar_312 | 3 | 3 | 0.000000454168 |
| Tarenaya hassleriana | NW_010965122.1 | 6 | CH_tha_85 | 6 | 59 | 0.0000000204658 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_68 | 5 | 6 | 0.000000000000422791 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |