Functional clusters
Information
- Type InterPro
- Description Senescence regulator S40
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 5 | CH_amhyb_152 | 3 | 3 | 0.0000023383 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_699 | 3 | 3 | 0.00000257371 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 5 | CH_can_487 | 3 | 4 | 0.0000278319 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_156 | 4 | 27 | 0.0000122073 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_700 | 3 | 3 | 0.00000902208 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_987 | 3 | 6 | 0.000180245 |
| Gossypium raimondii | Chr06 | 5 | CH_gra_379 | 3 | 4 | 0.0000167047 |
| Lotus japonicus | chr6 | 5 | CH_lja_388 | 3 | 6 | 0.000069725 |
| Olea europaea | chr6 | 5 | CH_oeu_297 | 4 | 31 | 0.0000435506 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_366 | 3 | 3 | 0.00000476955 |
| Simmondsia chinensis | GWHAASQ00000024 | 5 | CH_sci_178 | 3 | 3 | 0.00000130492 |
| Sechium edule | LG10 | 5 | CH_sed_421 | 3 | 7 | 0.000304031 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_240 | 3 | 3 | 0.00000045335 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 6 | CH_amhyb_152 | 3 | 3 | 0.0000023383 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_699 | 3 | 3 | 0.00000257371 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 6 | CH_can_487 | 3 | 4 | 0.0000278319 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_156 | 4 | 27 | 0.0000122073 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_700 | 3 | 3 | 0.00000902208 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_987 | 3 | 6 | 0.000180245 |
| Gossypium raimondii | Chr06 | 6 | CH_gra_379 | 3 | 4 | 0.0000167047 |
| Lotus japonicus | chr6 | 6 | CH_lja_388 | 3 | 6 | 0.000069725 |
| Olea europaea | chr6 | 6 | CH_oeu_297 | 4 | 31 | 0.0000435506 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_366 | 3 | 3 | 0.00000476955 |
| Simmondsia chinensis | GWHAASQ00000024 | 6 | CH_sci_178 | 3 | 3 | 0.00000130492 |
| Sechium edule | LG10 | 6 | CH_sed_421 | 3 | 7 | 0.000304031 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_240 | 3 | 3 | 0.00000045335 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |