Functional clusters

Information

  • Type InterPro
  • Description PLAC8 motif-containing protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 5 CH_aly_354 3 3 0.00000533263
Arabidopsis thaliana Chr3 5 CH_ath_275 3 3 0.00000140355
Amborella trichopoda AmTr_v1.0_scaffold00010 5 CH_atr_267 3 3 0.00000113599
Brassica carinata ChrB03 5 CH_bca_1335 3 4 0.0000642016
Brassica carinata ChrB03 5 CH_bca_1859 3 7 0.00056107
Brassica carinata ChrC08 5 CH_bca_552 4 6 0.000000128608
Brassica carinata ChrC07 5 CH_bca_763 4 9 0.00000107891
Brassica napus C08 5 CH_bna_810 3 3 0.0000107625
Brassica oleracea C8 5 CH_bol_55 6 9 0.0000000000000418325
Camellia sinensis var. sinensis Chr12 5 CH_camsi_459 4 7 0.0000000490064
Corylus avellana 7 5 CH_cav_441 3 4 0.0000341602
Corylus avellana 1 5 CH_cav_752 3 8 0.00047729
Chara braunii BFEA01000063 5 CH_cbr_92 4 17 0.000000556494
Coffea canephora chr11 5 CH_ccan_37 6 73 0.000000000000330895
Citrus clementina scaffold_2 5 CH_ccl_343 4 9 0.000000495498
Carya illinoinensis Chr05 5 CH_cil_199 5 6 0.0000000000535986
Carica papaya supercontig_2 5 CH_cpa_45 5 6 0.0000000000227385
Carica papaya supercontig_1 5 CH_cpa_84 4 4 0.00000000613531
Chenopodium quinoa C_Quinoa_Scaffold_1566 5 CH_cqu_571 3 3 0.0000151377
Chenopodium quinoa C_Quinoa_Scaffold_1710 5 CH_cqu_776 3 5 0.000151219
Daucus carota DCARv2_Chr9 5 CH_dca_48 6 7 0.0000000000000294264
Davidia involucrata GWHABJS00000008 5 CH_din_440 3 4 0.0000390027
Davidia involucrata GWHABJS00000008 5 CH_din_499 3 5 0.0000974622
Durio zibethinus NW_019167971.1 5 CH_dzi_103 5 7 0.000000000273709
Durio zibethinus NW_019167971.1 5 CH_dzi_343 3 3 0.0000230079
Durio zibethinus NW_019168270.1 5 CH_dzi_344 3 3 0.0000230079
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_173 4 4 0.00000000198289
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_474 3 4 0.0000185989
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_554 3 5 0.0000464815
Eucalyptus grandis Chr07 5 CH_egr_110 12 28 2.97582e-24
Eucalyptus grandis Chr02 5 CH_egr_1101 3 3 0.0000634123
Erythranthe guttata scaffold_5 5 CH_egut_630 3 6 0.000321359
Eutrema salsugineum scaffold_13 5 CH_esa_127 4 4 0.00000000405415
Fragaria vesca Fvb4 5 CH_fve_80 6 7 0.00000000000000606309
Gossypium hirsutum D01 5 CH_ghi_130 8 15 7.56392e-17
Gossypium hirsutum A01 5 CH_ghi_203 6 8 0.000000000000580315
Gossypium hirsutum D05 5 CH_ghi_425 5 13 0.0000000343096
Glycine max Gm05 5 CH_gma_507 3 3 0.0000141437
Gossypium raimondii Chr02 5 CH_gra_90 7 12 0.00000000000000230579
Helianthus annuus HanXRQChr12 5 CH_han_669 3 3 0.00000733807
Helianthus annuus HanXRQChr17 5 CH_han_854 3 5 0.0000733248
Hydrangea macrophylla Hma1.2p1_0614F.1 5 CH_hma_195 3 3 0.00000222136
Lupinus albus Lalb_Chr13 5 CH_lal_325 3 3 0.00000636284
Lotus japonicus chr4 5 CH_lja_324 3 3 0.0000102015
Lotus japonicus chr1 5 CH_lja_429 3 5 0.000101909
Lonicera japonica GWHAAZE00000006 5 CH_lonja_365 4 4 0.00000000963403
Lonicera japonica GWHAAZE00000003 5 CH_lonja_639 3 3 0.0000139878
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_328 4 5 0.0000000557978
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_47 8 8 1.74864e-21
Malus domestica Chr06 5 CH_mdo_781 3 3 0.0000213118
Malus domestica Chr00 5 CH_mdo_895 3 4 0.0000852006
Medicago truncatula chr8 5 CH_mtr_892 3 5 0.0000336579
Nelumbo nucifera chr4 5 CH_nnu_50 6 8 0.0000000000000375871
Oryza sativa ssp. japonica chr03 5 CH_osa_109 5 5 0.00000000000196355
Punica granatum NC_045132.1 5 CH_pgr_187 4 4 0.0000000189502
Punica granatum NC_045134.1 5 CH_pgr_375 3 3 0.0000219592
Prunus persica Pp05 5 CH_ppe_520 3 3 0.0000191986
Prunus persica Pp01 5 CH_ppe_89 8 13 5.6234e-18
Pisum sativum chr7LG7 5 CH_psa_183 4 7 0.000000027104
Papaver somniferum NC_039361.1 5 CH_pso_214 7 54 0.0000000000077289
Papaver somniferum NC_039362.1 5 CH_pso_221 5 7 0.00000000000962569
Populus trichocarpa Chr10 5 CH_ptr_472 3 3 0.0000115263
Populus trichocarpa Chr08 5 CH_ptr_473 3 3 0.0000115263
Phaseolus vulgaris Chr02 5 CH_pvu_102 5 5 0.00000000000187301
Quercus lobata 3 5 CH_qlo_1354 3 5 0.000103861
Quercus lobata 3 5 CH_qlo_143 9 16 2.55219e-21
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_262 5 6 0.00000000000231239
Salvia bowleyana GWHASIU00000004 5 CH_sbo_431 4 25 0.000013769
Sequoiadendron giganteum chr2 5 CH_sgi_100 10 10 1.43729e-27
Sequoiadendron giganteum chr1 5 CH_sgi_341 7 12 0.00000000000000447266
Selaginella moellendorffii scaffold_6 5 CH_smo_84 4 8 0.0000000845116
Trochodendron aralioides group8 5 CH_tar_432 3 3 0.0000177125
Theobroma cacao Chromosome_3 5 CH_tca_133 6 9 0.00000000000236001
Theobroma cacao Chromosome_2 5 CH_tca_279 4 4 0.0000000323012
Theobroma cacao Chromosome_2 5 CH_tca_85 7 10 0.00000000000000296372
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_177 4 5 0.0000000199023
Tripterygium wilfordii NC_052234.1 5 CH_twi_13 10 14 7.38602e-25
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_404 3 6 0.0000740026
Vigna mungo CM024069.1 5 CH_vmu_144 4 5 0.0000000295878
Vitis vinifera chr1 5 CH_vvi_104 6 7 0.0000000000000217568
Vitis vinifera chr3 5 CH_vvi_427 3 3 0.0000115427
Vitis vinifera chr1 5 CH_vvi_428 3 3 0.0000115427
Arabidopsis lyrata scaffold_3 6 CH_aly_354 3 3 0.00000533263
Arabidopsis thaliana Chr3 6 CH_ath_275 3 3 0.00000140355
Amborella trichopoda AmTr_v1.0_scaffold00010 6 CH_atr_267 3 3 0.00000113599
Brassica carinata ChrB03 6 CH_bca_1335 3 4 0.0000642016
Brassica carinata ChrB03 6 CH_bca_1859 3 7 0.00056107
Brassica carinata ChrC08 6 CH_bca_552 4 6 0.000000128608
Brassica carinata ChrC07 6 CH_bca_763 4 9 0.00000107891
Brassica napus C08 6 CH_bna_810 3 3 0.0000107625
Brassica oleracea C8 6 CH_bol_55 6 9 0.0000000000000418325
Camellia sinensis var. sinensis Chr12 6 CH_camsi_459 4 7 0.0000000490064
Corylus avellana 7 6 CH_cav_441 3 4 0.0000341602
Corylus avellana 1 6 CH_cav_752 3 8 0.00047729
Chara braunii BFEA01000063 6 CH_cbr_92 4 17 0.000000556494
Coffea canephora chr11 6 CH_ccan_37 6 73 0.000000000000330895
Citrus clementina scaffold_2 6 CH_ccl_343 4 9 0.000000495498
Carya illinoinensis Chr05 6 CH_cil_199 5 6 0.0000000000535986
Carica papaya supercontig_2 6 CH_cpa_45 5 6 0.0000000000227385
Carica papaya supercontig_1 6 CH_cpa_84 4 4 0.00000000613531
Chenopodium quinoa C_Quinoa_Scaffold_1566 6 CH_cqu_571 3 3 0.0000151377
Chenopodium quinoa C_Quinoa_Scaffold_1710 6 CH_cqu_776 3 5 0.000151219
Daucus carota DCARv2_Chr9 6 CH_dca_48 6 7 0.0000000000000294264
Davidia involucrata GWHABJS00000008 6 CH_din_440 3 4 0.0000390027
Davidia involucrata GWHABJS00000008 6 CH_din_499 3 5 0.0000974622
Durio zibethinus NW_019167971.1 6 CH_dzi_103 5 7 0.000000000273709
Durio zibethinus NW_019167971.1 6 CH_dzi_343 3 3 0.0000230079
Durio zibethinus NW_019168270.1 6 CH_dzi_344 3 3 0.0000230079
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_173 4 4 0.00000000198289
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_474 3 4 0.0000185989
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_554 3 5 0.0000464815
Eucalyptus grandis Chr07 6 CH_egr_110 12 28 2.97582e-24
Eucalyptus grandis Chr02 6 CH_egr_1101 3 3 0.0000634123
Erythranthe guttata scaffold_5 6 CH_egut_630 3 6 0.000321359
Eutrema salsugineum scaffold_13 6 CH_esa_127 4 4 0.00000000405415
Fragaria x ananassa Fvb4-4 6 CH_fan_673 3 3 0.0000175747
Fragaria x ananassa Fvb5-3 6 CH_fan_674 3 3 0.0000175747
Fragaria x ananassa Fvb4-3 6 CH_fan_675 3 3 0.0000175747
Fragaria vesca Fvb4 6 CH_fve_80 6 7 0.00000000000000606309
Gossypium hirsutum D01 6 CH_ghi_130 8 15 7.56392e-17
Gossypium hirsutum A01 6 CH_ghi_203 6 8 0.000000000000580315
Gossypium hirsutum D05 6 CH_ghi_425 5 13 0.0000000343096
Glycine max Gm05 6 CH_gma_507 3 3 0.0000141437
Gossypium raimondii Chr02 6 CH_gra_90 7 12 0.00000000000000230579
Helianthus annuus HanXRQChr12 6 CH_han_669 3 3 0.00000733807
Helianthus annuus HanXRQChr17 6 CH_han_854 3 5 0.0000733248
Hydrangea macrophylla Hma1.2p1_0614F.1 6 CH_hma_195 3 3 0.00000222136
Lupinus albus Lalb_Chr13 6 CH_lal_325 3 3 0.00000636284
Lotus japonicus chr4 6 CH_lja_324 3 3 0.0000102015
Lotus japonicus chr1 6 CH_lja_429 3 5 0.000101909
Lonicera japonica GWHAAZE00000006 6 CH_lonja_365 4 4 0.00000000963403
Lonicera japonica GWHAAZE00000003 6 CH_lonja_639 3 3 0.0000139878
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_328 4 5 0.0000000557978
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_47 8 8 1.74864e-21
Malus domestica Chr06 6 CH_mdo_781 3 3 0.0000213118
Malus domestica Chr00 6 CH_mdo_895 3 4 0.0000852006
Medicago truncatula chr8 6 CH_mtr_892 3 5 0.0000336579
Nelumbo nucifera chr4 6 CH_nnu_50 6 8 0.0000000000000375871
Oryza sativa ssp. japonica chr03 6 CH_osa_109 5 5 0.00000000000196355
Punica granatum NC_045132.1 6 CH_pgr_187 4 4 0.0000000189502
Punica granatum NC_045134.1 6 CH_pgr_375 3 3 0.0000219592
Prunus persica Pp05 6 CH_ppe_520 3 3 0.0000191986
Prunus persica Pp01 6 CH_ppe_89 8 13 5.6234e-18
Pisum sativum chr7LG7 6 CH_psa_183 4 7 0.000000027104
Papaver somniferum NC_039361.1 6 CH_pso_214 7 54 0.0000000000077289
Papaver somniferum NC_039362.1 6 CH_pso_221 5 7 0.00000000000962569
Populus trichocarpa Chr10 6 CH_ptr_472 3 3 0.0000115263
Populus trichocarpa Chr08 6 CH_ptr_473 3 3 0.0000115263
Phaseolus vulgaris Chr02 6 CH_pvu_102 5 5 0.00000000000187301
Quercus lobata 3 6 CH_qlo_1354 3 5 0.000103861
Quercus lobata 3 6 CH_qlo_143 9 16 2.55219e-21
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_262 5 6 0.00000000000231239
Salvia bowleyana GWHASIU00000004 6 CH_sbo_431 4 25 0.000013769
Sequoiadendron giganteum chr2 6 CH_sgi_100 10 10 1.43729e-27
Sequoiadendron giganteum chr1 6 CH_sgi_341 7 12 0.00000000000000447266
Selaginella moellendorffii scaffold_6 6 CH_smo_84 4 8 0.0000000845116
Trochodendron aralioides group8 6 CH_tar_432 3 3 0.0000177125
Theobroma cacao Chromosome_3 6 CH_tca_133 6 9 0.00000000000236001
Theobroma cacao Chromosome_2 6 CH_tca_279 4 4 0.0000000323012
Theobroma cacao Chromosome_2 6 CH_tca_85 7 10 0.00000000000000296372
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_177 4 5 0.0000000199023
Tripterygium wilfordii NC_052234.1 6 CH_twi_13 10 14 7.38602e-25
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_404 3 6 0.0000740026
Vigna mungo CM024069.1 6 CH_vmu_144 4 5 0.0000000295878
Vitis vinifera chr1 6 CH_vvi_104 6 7 0.0000000000000217568
Vitis vinifera chr3 6 CH_vvi_427 3 3 0.0000115427
Vitis vinifera chr1 6 CH_vvi_428 3 3 0.0000115427

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001