Functional clusters
Information
- Type InterPro
- Description D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_254 | 3 | 4 | 0.00000848776 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_703 | 3 | 3 | 0.0000044045 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_815 | 3 | 4 | 0.0000176128 |
| Brassica carinata | ChrC07 | 5 | CH_bca_839 | 3 | 3 | 0.0000020049 |
| Brassica napus | A09 | 5 | CH_bna_652 | 3 | 3 | 0.00000209824 |
| Brassica napus | C08 | 5 | CH_bna_653 | 3 | 3 | 0.00000209824 |
| Brassica oleracea | C8 | 5 | CH_bol_391 | 3 | 4 | 0.0000035892 |
| Capsicum annuum | PGAv.1.6.scaffold1561 | 5 | CH_can_204 | 4 | 4 | 0.00000000169323 |
| Capsicum annuum | PGAv.1.6.scaffold438 | 5 | CH_can_231 | 4 | 5 | 0.00000000846298 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_141 | 3 | 5 | 0.00000762951 |
| Corylus avellana | 4 | 5 | CH_cav_674 | 3 | 10 | 0.000301932 |
| Coffea canephora | chr4 | 5 | CH_ccan_207 | 3 | 11 | 0.000000538651 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_222 | 4 | 4 | 0.00000000165785 |
| Corchorus olitorius | AWUE01020729.1 | 5 | CH_col_95 | 3 | 3 | 0.00000716807 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3458 | 5 | CH_cqu_654 | 3 | 6 | 0.0000549127 |
| Chlamydomonas reinhardtii | chromosome_7 | 5 | CH_cre_62 | 3 | 5 | 0.00000387936 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_102 | 5 | 11 | 0.000000000216173 |
| Cucumis sativus L. | chr7 | 5 | CH_csa_242 | 3 | 3 | 0.0000029895 |
| Durio zibethinus | NW_019167893.1 | 5 | CH_dzi_266 | 3 | 3 | 0.00000146619 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_164 | 8 | 11 | 5.99109e-20 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_193 | 4 | 4 | 0.000000000438567 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_408 | 3 | 3 | 0.00000148885 |
| Glycine max | Gm07 | 5 | CH_gma_196 | 4 | 4 | 0.000000000501994 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_279 | 4 | 4 | 0.000000000529756 |
| Lotus japonicus | chr2 | 5 | CH_lja_264 | 3 | 3 | 0.00000168747 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_221 | 4 | 4 | 0.000000000741536 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_457 | 3 | 3 | 0.00000221936 |
| Manihot esculenta | Chromosome04 | 5 | CH_mes_229 | 4 | 4 | 0.00000000209035 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_403 | 3 | 3 | 0.00000456407 |
| Medicago truncatula | chr4 | 5 | CH_mtr_277 | 5 | 9 | 0.0000000000117542 |
| Medicago truncatula | chr8 | 5 | CH_mtr_703 | 3 | 3 | 0.00000141802 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_191 | 4 | 5 | 0.00000000301544 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_190 | 5 | 7 | 0.00000000000106825 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_396 | 4 | 8 | 0.0000000175547 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_347 | 3 | 4 | 0.00000534308 |
| Quercus lobata | 5 | 5 | CH_qlo_1019 | 3 | 3 | 0.00000326271 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_356 | 5 | 5 | 0.0000000000000106459 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_399 | 3 | 3 | 0.00000147795 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_356 | 3 | 3 | 0.00000108022 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_455 | 3 | 4 | 0.0000146386 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_224 | 3 | 3 | 0.00000179112 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_254 | 3 | 4 | 0.00000848776 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_703 | 3 | 3 | 0.0000044045 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_815 | 3 | 4 | 0.0000176128 |
| Brassica carinata | ChrC07 | 6 | CH_bca_839 | 3 | 3 | 0.0000020049 |
| Brassica napus | A09 | 6 | CH_bna_652 | 3 | 3 | 0.00000209824 |
| Brassica napus | C08 | 6 | CH_bna_653 | 3 | 3 | 0.00000209824 |
| Brassica oleracea | C8 | 6 | CH_bol_391 | 3 | 4 | 0.0000035892 |
| Capsicum annuum | PGAv.1.6.scaffold1561 | 6 | CH_can_204 | 4 | 4 | 0.00000000169323 |
| Capsicum annuum | PGAv.1.6.scaffold438 | 6 | CH_can_231 | 4 | 5 | 0.00000000846298 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_141 | 3 | 5 | 0.00000762951 |
| Corylus avellana | 4 | 6 | CH_cav_674 | 3 | 10 | 0.000301932 |
| Coffea canephora | chr4 | 6 | CH_ccan_207 | 3 | 11 | 0.000000538651 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_222 | 4 | 4 | 0.00000000165785 |
| Cucumis melo | chr06 | 6 | CH_cme_187 | 4 | 13 | 0.000000454258 |
| Corchorus olitorius | AWUE01020729.1 | 6 | CH_col_95 | 3 | 3 | 0.00000716807 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3458 | 6 | CH_cqu_654 | 3 | 6 | 0.0000549127 |
| Chlamydomonas reinhardtii | chromosome_7 | 6 | CH_cre_62 | 3 | 5 | 0.00000387936 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_102 | 5 | 11 | 0.000000000216173 |
| Cucumis sativus L. | chr7 | 6 | CH_csa_242 | 3 | 3 | 0.0000029895 |
| Durio zibethinus | NW_019167893.1 | 6 | CH_dzi_266 | 3 | 3 | 0.00000146619 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_164 | 8 | 11 | 5.99109e-20 |
| Fragaria x ananassa | Fvb7-1 | 6 | CH_fan_671 | 3 | 4 | 0.0000173259 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_815 | 3 | 6 | 0.0000865857 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_193 | 4 | 4 | 0.000000000438567 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_408 | 3 | 3 | 0.00000148885 |
| Glycine max | Gm07 | 6 | CH_gma_196 | 4 | 4 | 0.000000000501994 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_279 | 4 | 4 | 0.000000000529756 |
| Lotus japonicus | chr2 | 6 | CH_lja_264 | 3 | 3 | 0.00000168747 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_221 | 4 | 4 | 0.000000000741536 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_457 | 3 | 3 | 0.00000221936 |
| Manihot esculenta | Chromosome04 | 6 | CH_mes_229 | 4 | 4 | 0.00000000209035 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_403 | 3 | 3 | 0.00000456407 |
| Medicago truncatula | chr4 | 6 | CH_mtr_277 | 5 | 9 | 0.0000000000117542 |
| Medicago truncatula | chr8 | 6 | CH_mtr_703 | 3 | 3 | 0.00000141802 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_191 | 4 | 5 | 0.00000000301544 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_190 | 5 | 7 | 0.00000000000106825 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_396 | 4 | 8 | 0.0000000175547 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_347 | 3 | 4 | 0.00000534308 |
| Quercus lobata | 5 | 6 | CH_qlo_1019 | 3 | 3 | 0.00000326271 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_356 | 5 | 5 | 0.0000000000000106459 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_399 | 3 | 3 | 0.00000147795 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_356 | 3 | 3 | 0.00000108022 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_455 | 3 | 4 | 0.0000146386 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_224 | 3 | 3 | 0.00000179112 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |