Functional clusters

Information

  • Type InterPro
  • Description Trigger factor

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 5 CH_acertr_880 2 2 0.000422982
Actinidia chinensis Lachesis_group3 5 CH_ach_341 2 2 0.000162964
Amborella trichopoda AmTr_v1.0_scaffold00116 5 CH_atr_485 2 2 0.000238322
Brassica napus C09 5 CH_bna_1307 2 2 0.000389795
Capsicum annuum PGAv.1.6.scaffold1001 5 CH_can_778 2 2 0.000495663
Coffea canephora chr6 5 CH_ccan_429 2 9 0.0000766598
Citrus clementina scaffold_3 5 CH_ccl_642 2 2 0.000246093
Citrullus lanatus CG_Chr06 5 CH_cla_339 2 2 0.000532269
Carica papaya supercontig_9 5 CH_cpa_306 2 2 0.0000950661
Cucumis sativus L. chr6 5 CH_csa_401 2 2 0.000250428
Durio zibethinus NW_019168270.1 5 CH_dzi_437 2 2 0.000139047
Eucalyptus grandis Chr01 5 CH_egr_675 3 3 0.0000000513834
Glycine max Gm14 5 CH_gma_577 3 21 0.0000574187
Hydrangea macrophylla Hma1.2p1_0150F.1 5 CH_hma_340 2 2 0.000111086
Magnolia biondii Chr08 5 CH_mbi_913 2 2 0.000145698
Manihot esculenta Chromosome11 5 CH_mes_579 2 2 0.000183189
Olea europaea chr6 5 CH_oeu_437 2 2 0.000160137
Punica granatum NC_045130.1 5 CH_pgr_497 2 2 0.000225107
Populus trichocarpa Chr13 5 CH_ptr_615 2 2 0.0001734
Phaseolus vulgaris Chr05 5 CH_pvu_600 2 2 0.000440836
Quercus lobata 10 5 CH_qlo_548 4 6 0.000000000433439
Salix brachista GWHAAZH00000013 5 CH_sbr_527 2 2 0.000189042
Sechium edule LG07 5 CH_sed_394 2 2 0.000214026
Solanum lycopersicum SL4.0ch06 5 CH_sly_709 2 2 0.000176082
Solanum pennellii Spenn-ch06 5 CH_spe_644 2 2 0.000133437
Solanum tuberosum ST4.03ch06 5 CH_stu_706 2 2 0.000153736
Trochodendron aralioides group17 5 CH_tar_651 2 2 0.00018011
Tripterygium wilfordii NC_052240.1 5 CH_twi_400 2 2 0.000167252
Acer truncatum chr4 6 CH_acertr_880 2 2 0.000422982
Actinidia chinensis Lachesis_group3 6 CH_ach_341 2 2 0.000162964
Amborella trichopoda AmTr_v1.0_scaffold00116 6 CH_atr_485 2 2 0.000238322
Brassica napus C09 6 CH_bna_1307 2 2 0.000389795
Capsicum annuum PGAv.1.6.scaffold1001 6 CH_can_778 2 2 0.000495663
Coffea canephora chr6 6 CH_ccan_429 2 9 0.0000766598
Citrus clementina scaffold_3 6 CH_ccl_642 2 2 0.000246093
Citrullus lanatus CG_Chr06 6 CH_cla_339 2 2 0.000532269
Cucumis melo chr11 6 CH_cme_364 2 2 0.000200133
Carica papaya supercontig_9 6 CH_cpa_306 2 2 0.0000950661
Cucumis sativus L. chr6 6 CH_csa_401 2 2 0.000250428
Durio zibethinus NW_019168270.1 6 CH_dzi_437 2 2 0.000139047
Eucalyptus grandis Chr01 6 CH_egr_675 3 3 0.0000000513834
Glycine max Gm14 6 CH_gma_577 3 21 0.0000574187
Hydrangea macrophylla Hma1.2p1_0150F.1 6 CH_hma_340 2 2 0.000111086
Magnolia biondii Chr08 6 CH_mbi_913 2 2 0.000145698
Manihot esculenta Chromosome11 6 CH_mes_579 2 2 0.000183189
Olea europaea chr6 6 CH_oeu_437 2 2 0.000160137
Punica granatum NC_045130.1 6 CH_pgr_497 2 2 0.000225107
Populus trichocarpa Chr13 6 CH_ptr_615 2 2 0.0001734
Phaseolus vulgaris Chr05 6 CH_pvu_600 2 2 0.000440836
Quercus lobata 10 6 CH_qlo_548 4 6 0.000000000433439
Salix brachista GWHAAZH00000013 6 CH_sbr_527 2 2 0.000189042
Sechium edule LG07 6 CH_sed_394 2 2 0.000214026
Solanum lycopersicum SL4.0ch06 6 CH_sly_709 2 2 0.000176082
Solanum pennellii Spenn-ch06 6 CH_spe_644 2 2 0.000133437
Solanum tuberosum ST4.03ch06 6 CH_stu_706 2 2 0.000153736
Trochodendron aralioides group17 6 CH_tar_651 2 2 0.00018011
Tripterygium wilfordii NC_052240.1 6 CH_twi_400 2 2 0.000167252

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001