Functional clusters
Information
- Type InterPro
- Description Sialate O-acetylesterase domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_283 | 2 | 2 | 0.00024077 |
| Aethionema arabicum | LG-2 | 5 | CH_aar_156 | 3 | 4 | 0.000000199754 |
| Acer truncatum | chr13 | 5 | CH_acertr_121 | 4 | 5 | 0.0000000000788316 |
| Actinidia chinensis | Lachesis_group7 | 5 | CH_ach_100 | 3 | 3 | 0.0000000885264 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_484 | 2 | 2 | 0.000481193 |
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_485 | 2 | 2 | 0.000481193 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_172 | 4 | 16 | 0.0000000231669 |
| Capsicum annuum | PGAv.1.6.scaffold170 | 5 | CH_can_470 | 3 | 7 | 0.0000200491 |
| Corylus avellana | 7 | 5 | CH_cav_226 | 3 | 3 | 0.0000000881765 |
| Coffea canephora | chr10 | 5 | CH_ccan_507 | 2 | 4 | 0.000153319 |
| Ceratophyllum demersum | 1 | 5 | CH_cde_477 | 2 | 3 | 0.000710769 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_127 | 4 | 4 | 0.0000000000456165 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_323 | 5 | 30 | 0.0000000968072 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_89 | 8 | 30 | 1.56669e-16 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_133 | 3 | 3 | 0.000000991629 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4044 | 5 | CH_cqu_925 | 2 | 2 | 0.000473821 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 5 | CH_cqu_926 | 2 | 2 | 0.000473821 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_223 | 3 | 3 | 0.00000125433 |
| Durio zibethinus | NW_019167937.1 | 5 | CH_dzi_483 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_248 | 3 | 3 | 0.0000000604069 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_815 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_731 | 3 | 3 | 0.000000179842 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_146 | 4 | 4 | 0.0000000000173747 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_633 | 2 | 2 | 0.00017673 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_619 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_75 | 7 | 15 | 1.33569e-18 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_1153 | 2 | 2 | 0.000598874 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_225 | 4 | 8 | 0.000000000997873 |
| Malus domestica | Chr15 | 5 | CH_mdo_960 | 2 | 2 | 0.000113763 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_628 | 2 | 2 | 0.000366379 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_446 | 2 | 2 | 0.000144505 |
| Olea europaea | chr10 | 5 | CH_oeu_226 | 3 | 5 | 0.00000512718 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_642 | 2 | 2 | 0.000316874 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_320 | 3 | 5 | 0.00000472798 |
| Prunus persica | Pp01 | 5 | CH_ppe_687 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_618 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_1197 | 2 | 2 | 0.000630822 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_433 | 3 | 3 | 0.0000000426366 |
| Populus trichocarpa | Chr14 | 5 | CH_ptr_742 | 2 | 2 | 0.000578001 |
| Populus trichocarpa | Chr09 | 5 | CH_ptr_743 | 2 | 2 | 0.000578001 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1112 | 2 | 2 | 0.000119596 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_59 | 8 | 12 | 3.27063e-23 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_350 | 3 | 4 | 0.00000104321 |
| Salix brachista | GWHAAZH00000014 | 5 | CH_sbr_28 | 7 | 7 | 1.77574e-22 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2397 | 2 | 5 | 0.000487116 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_755 | 3 | 11 | 0.000187244 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_407 | 4 | 17 | 0.000000959013 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_804 | 3 | 12 | 0.00031478 |
| Trochodendron aralioides | group5 | 5 | CH_tar_162 | 3 | 3 | 0.00000000540676 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_613 | 2 | 2 | 0.000219716 |
| Tripterygium wilfordii | NC_052242.1 | 5 | CH_twi_399 | 2 | 2 | 0.000167252 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_34 | 6 | 7 | 7.6415e-18 |
| Vanilla planifolia | CM028156.1 | 5 | CH_vpl_213 | 3 | 6 | 0.00000163744 |
| Vitis vinifera | chr18 | 5 | CH_vvi_602 | 2 | 2 | 0.000228189 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_283 | 2 | 2 | 0.00024077 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_156 | 3 | 4 | 0.000000199754 |
| Acer truncatum | chr13 | 6 | CH_acertr_121 | 4 | 5 | 0.0000000000788316 |
| Actinidia chinensis | Lachesis_group7 | 6 | CH_ach_100 | 3 | 3 | 0.0000000885264 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_484 | 2 | 2 | 0.000481193 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_485 | 2 | 2 | 0.000481193 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_172 | 4 | 16 | 0.0000000231669 |
| Capsicum annuum | PGAv.1.6.scaffold170 | 6 | CH_can_470 | 3 | 7 | 0.0000200491 |
| Corylus avellana | 7 | 6 | CH_cav_226 | 3 | 3 | 0.0000000881765 |
| Coffea canephora | chr10 | 6 | CH_ccan_507 | 2 | 4 | 0.000153319 |
| Ceratophyllum demersum | 1 | 6 | CH_cde_477 | 2 | 3 | 0.000710769 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_127 | 4 | 4 | 0.0000000000456165 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_323 | 5 | 30 | 0.0000000968072 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_89 | 8 | 30 | 1.56669e-16 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_133 | 3 | 3 | 0.000000991629 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4044 | 6 | CH_cqu_925 | 2 | 2 | 0.000473821 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 6 | CH_cqu_926 | 2 | 2 | 0.000473821 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_223 | 3 | 3 | 0.00000125433 |
| Durio zibethinus | NW_019167937.1 | 6 | CH_dzi_483 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_248 | 3 | 3 | 0.0000000604069 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_815 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_731 | 3 | 3 | 0.000000179842 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_146 | 4 | 4 | 0.0000000000173747 |
| Fragaria x ananassa | Fvb2-3 | 6 | CH_fan_1072 | 2 | 2 | 0.000518101 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_633 | 2 | 2 | 0.00017673 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_619 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_75 | 7 | 15 | 1.33569e-18 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_1153 | 2 | 2 | 0.000598874 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_225 | 4 | 8 | 0.000000000997873 |
| Malus domestica | Chr15 | 6 | CH_mdo_960 | 2 | 2 | 0.000113763 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_628 | 2 | 2 | 0.000366379 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_446 | 2 | 2 | 0.000144505 |
| Olea europaea | chr10 | 6 | CH_oeu_226 | 3 | 5 | 0.00000512718 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_642 | 2 | 2 | 0.000316874 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_320 | 3 | 5 | 0.00000472798 |
| Prunus persica | Pp01 | 6 | CH_ppe_687 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_618 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_1197 | 2 | 2 | 0.000630822 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_433 | 3 | 3 | 0.0000000426366 |
| Populus trichocarpa | Chr14 | 6 | CH_ptr_742 | 2 | 2 | 0.000578001 |
| Populus trichocarpa | Chr09 | 6 | CH_ptr_743 | 2 | 2 | 0.000578001 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1112 | 2 | 2 | 0.000119596 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_59 | 8 | 12 | 3.27063e-23 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_350 | 3 | 4 | 0.00000104321 |
| Salix brachista | GWHAAZH00000014 | 6 | CH_sbr_28 | 7 | 7 | 1.77574e-22 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2397 | 2 | 5 | 0.000487116 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_755 | 3 | 11 | 0.000187244 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_407 | 4 | 17 | 0.000000959013 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_804 | 3 | 12 | 0.00031478 |
| Trochodendron aralioides | group5 | 6 | CH_tar_162 | 3 | 3 | 0.00000000540676 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_613 | 2 | 2 | 0.000219716 |
| Tripterygium wilfordii | NC_052242.1 | 6 | CH_twi_399 | 2 | 2 | 0.000167252 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_34 | 6 | 7 | 7.6415e-18 |
| Vanilla planifolia | CM028156.1 | 6 | CH_vpl_213 | 3 | 6 | 0.00000163744 |
| Vitis vinifera | chr18 | 6 | CH_vvi_602 | 2 | 2 | 0.000228189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |