Functional clusters
Information
- Type InterPro
- Description Sodium/calcium exchanger membrane region
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_221 | 5 | 16 | 0.0000000270642 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_226 | 3 | 3 | 0.00000351194 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1495 | 3 | 6 | 0.000181373 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_315 | 6 | 8 | 0.0000000000000234652 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_359 | 3 | 3 | 0.00000227463 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_528 | 3 | 5 | 0.0000504052 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_393 | 4 | 5 | 0.0000000237122 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_868 | 3 | 5 | 0.0000908673 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_323 | 4 | 5 | 0.0000000483591 |
| Malus domestica | Chr03 | 5 | CH_mdo_880 | 3 | 5 | 0.0000706125 |
| Prunus persica | Pp04 | 5 | CH_ppe_510 | 3 | 4 | 0.0000151863 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_864 | 3 | 6 | 0.0000617787 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_441 | 3 | 3 | 0.00000485607 |
| Phaseolus vulgaris | Chr05 | 5 | CH_pvu_340 | 3 | 3 | 0.00000368443 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_272 | 5 | 7 | 0.00000000000462377 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_203 | 5 | 5 | 0.00000000000552892 |
| Theobroma cacao | Chromosome_7 | 5 | CH_tca_654 | 3 | 8 | 0.000305752 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_306 | 3 | 3 | 0.00000370452 |
| Vigna mungo | CM024079.1 | 5 | CH_vmu_485 | 3 | 9 | 0.000238896 |
| Vitis vinifera | chr19 | 5 | CH_vvi_409 | 3 | 3 | 0.00000590151 |
| Acer truncatum | chr1 | 6 | CH_acertr_221 | 5 | 16 | 0.0000000270642 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_226 | 3 | 3 | 0.00000351194 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1495 | 3 | 6 | 0.000181373 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_315 | 6 | 8 | 0.0000000000000234652 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_359 | 3 | 3 | 0.00000227463 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_395 | 4 | 7 | 0.000000478771 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_700 | 3 | 3 | 0.0000235014 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_528 | 3 | 5 | 0.0000504052 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_393 | 4 | 5 | 0.0000000237122 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_868 | 3 | 5 | 0.0000908673 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_323 | 4 | 5 | 0.0000000483591 |
| Malus domestica | Chr03 | 6 | CH_mdo_880 | 3 | 5 | 0.0000706125 |
| Prunus persica | Pp04 | 6 | CH_ppe_510 | 3 | 4 | 0.0000151863 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_864 | 3 | 6 | 0.0000617787 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_441 | 3 | 3 | 0.00000485607 |
| Phaseolus vulgaris | Chr05 | 6 | CH_pvu_340 | 3 | 3 | 0.00000368443 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_272 | 5 | 7 | 0.00000000000462377 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_203 | 5 | 5 | 0.00000000000552892 |
| Theobroma cacao | Chromosome_7 | 6 | CH_tca_654 | 3 | 8 | 0.000305752 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_306 | 3 | 3 | 0.00000370452 |
| Vigna mungo | CM024079.1 | 6 | CH_vmu_485 | 3 | 9 | 0.000238896 |
| Vitis vinifera | chr19 | 6 | CH_vvi_409 | 3 | 3 | 0.00000590151 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |