Functional clusters
Information
- Type InterPro
- Description Aspartate-tRNA synthetase, type 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 5 | CH_atr_555 | 2 | 2 | 0.000476644 |
| Brassica carinata | Contig525 | 5 | CH_bca_1774 | 2 | 2 | 0.000448905 |
| Brassica oleracea | C8 | 5 | CH_bol_841 | 2 | 2 | 0.000686409 |
| Capsicum annuum | PGAv.1.6.scaffold786 | 5 | CH_can_272 | 3 | 3 | 0.0000000409487 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_689 | 2 | 2 | 0.000414723 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 5 | CH_cqu_728 | 2 | 2 | 0.000142146 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_1015 | 2 | 4 | 0.000359303 |
| Nelumbo nucifera | chr8 | 5 | CH_nnu_535 | 2 | 3 | 0.000433498 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_939 | 3 | 23 | 0.000113124 |
| Quercus lobata | 12 | 5 | CH_qlo_949 | 3 | 13 | 0.00000114325 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1029 | 3 | 20 | 0.0000542932 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_382 | 4 | 11 | 0.000000055799 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_517 | 3 | 4 | 0.00000299772 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_419 | 2 | 2 | 0.0000929238 |
| Vanilla planifolia | CM028154.1 | 5 | CH_vpl_519 | 2 | 2 | 0.000221664 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 6 | CH_atr_555 | 2 | 2 | 0.000476644 |
| Brassica carinata | Contig525 | 6 | CH_bca_1774 | 2 | 2 | 0.000448905 |
| Brassica oleracea | C8 | 6 | CH_bol_841 | 2 | 2 | 0.000686409 |
| Capsicum annuum | PGAv.1.6.scaffold786 | 6 | CH_can_272 | 3 | 3 | 0.0000000409487 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_689 | 2 | 2 | 0.000414723 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 6 | CH_cqu_728 | 2 | 2 | 0.000142146 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_1063 | 2 | 2 | 0.000518101 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_1015 | 2 | 4 | 0.000359303 |
| Nelumbo nucifera | chr8 | 6 | CH_nnu_535 | 2 | 3 | 0.000433498 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_939 | 3 | 23 | 0.000113124 |
| Quercus lobata | 12 | 6 | CH_qlo_949 | 3 | 13 | 0.00000114325 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1029 | 3 | 20 | 0.0000542932 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_382 | 4 | 11 | 0.000000055799 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_517 | 3 | 4 | 0.00000299772 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_419 | 2 | 2 | 0.0000929238 |
| Vanilla planifolia | CM028154.1 | 6 | CH_vpl_519 | 2 | 2 | 0.000221664 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |