Functional clusters
Information
- Type InterPro
- Description Piwi domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 5 | CH_aar_107 | 4 | 5 | 0.00000000375823 |
| Amborella trichopoda | AmTr_v1.0_scaffold00008 | 5 | CH_atr_315 | 3 | 4 | 0.0000108262 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_105 | 6 | 6 | 0.00000000000000105042 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3389 | 5 | CH_cqu_597 | 3 | 4 | 0.0000238476 |
| Davidia involucrata | GWHABJS00000002 | 5 | CH_din_200 | 4 | 5 | 0.00000000908874 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_982 | 3 | 5 | 0.0000186934 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_383 | 3 | 3 | 0.00000540821 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_472 | 3 | 5 | 0.0000540368 |
| Gossypium hirsutum | A12 | 5 | CH_ghi_657 | 3 | 3 | 0.00000434206 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_729 | 3 | 4 | 0.0000173633 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_660 | 3 | 4 | 0.00000609131 |
| Manihot esculenta | Chromosome02 | 5 | CH_mes_456 | 3 | 5 | 0.0000254336 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_95 | 5 | 11 | 0.000000000115259 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_862 | 3 | 4 | 0.0000108676 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_513 | 3 | 3 | 0.00000284217 |
| Simmondsia chinensis | GWHAASQ00000006 | 5 | CH_sci_121 | 4 | 7 | 0.0000000883638 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_347 | 6 | 9 | 0.00000000000000641411 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_719 | 4 | 4 | 0.000000000825509 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_413 | 3 | 3 | 0.00000235128 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_361 | 3 | 3 | 0.00000135028 |
| Aethionema arabicum | LG-7 | 6 | CH_aar_107 | 4 | 5 | 0.00000000375823 |
| Amborella trichopoda | AmTr_v1.0_scaffold00008 | 6 | CH_atr_315 | 3 | 4 | 0.0000108262 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_105 | 6 | 6 | 0.00000000000000105042 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3389 | 6 | CH_cqu_597 | 3 | 4 | 0.0000238476 |
| Davidia involucrata | GWHABJS00000002 | 6 | CH_din_200 | 4 | 5 | 0.00000000908874 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_982 | 3 | 5 | 0.0000186934 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_383 | 3 | 3 | 0.00000540821 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_472 | 3 | 5 | 0.0000540368 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_1042 | 3 | 8 | 0.000435913 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_723 | 3 | 4 | 0.000031175 |
| Gossypium hirsutum | A12 | 6 | CH_ghi_657 | 3 | 3 | 0.00000434206 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_729 | 3 | 4 | 0.0000173633 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_660 | 3 | 4 | 0.00000609131 |
| Manihot esculenta | Chromosome02 | 6 | CH_mes_456 | 3 | 5 | 0.0000254336 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_95 | 5 | 11 | 0.000000000115259 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_862 | 3 | 4 | 0.0000108676 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_513 | 3 | 3 | 0.00000284217 |
| Simmondsia chinensis | GWHAASQ00000006 | 6 | CH_sci_121 | 4 | 7 | 0.0000000883638 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_347 | 6 | 9 | 0.00000000000000641411 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_719 | 4 | 4 | 0.000000000825509 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_413 | 3 | 3 | 0.00000235128 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_361 | 3 | 3 | 0.00000135028 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |