Functional clusters
Information
- Type InterPro
- Description TraB/PrgY/GumN family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_91 | 3 | 3 | 0.0000000966212 |
| Aethionema arabicum | LG-8 | 5 | CH_aar_385 | 2 | 2 | 0.000547395 |
| Brassica oleracea | C8 | 5 | CH_bol_773 | 2 | 2 | 0.000490292 |
| Cicer arietinum L. | Ca_LG6_v3 | 5 | CH_car_385 | 2 | 3 | 0.000700425 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_483 | 2 | 2 | 0.000227204 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_776 | 2 | 2 | 0.000691204 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_777 | 2 | 2 | 0.000691204 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_1320 | 2 | 3 | 0.000526721 |
| Lotus japonicus | chr3 | 5 | CH_lja_523 | 2 | 2 | 0.000429046 |
| Malus domestica | Chr17 | 5 | CH_mdo_1360 | 2 | 3 | 0.000682551 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_494 | 2 | 2 | 0.000225107 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_196 | 5 | 9 | 0.000000000002085 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_360 | 4 | 8 | 0.00000000734453 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_677 | 2 | 2 | 0.000346801 |
| Quercus lobata | 9 | 5 | CH_qlo_574 | 4 | 12 | 0.00000000102152 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_224 | 4 | 6 | 0.0000000013983 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_720 | 3 | 19 | 0.000495206 |
| Salix brachista | GWHAAZH00000007 | 5 | CH_sbr_596 | 2 | 2 | 0.000378084 |
| Tripterygium wilfordii | NC_052237.1 | 5 | CH_twi_453 | 2 | 2 | 0.000334504 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_439 | 2 | 2 | 0.000193842 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_91 | 3 | 3 | 0.0000000966212 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_385 | 2 | 2 | 0.000547395 |
| Brassica oleracea | C8 | 6 | CH_bol_773 | 2 | 2 | 0.000490292 |
| Cicer arietinum L. | Ca_LG6_v3 | 6 | CH_car_385 | 2 | 3 | 0.000700425 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_483 | 2 | 2 | 0.000227204 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_776 | 2 | 2 | 0.000691204 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_777 | 2 | 2 | 0.000691204 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_1320 | 2 | 3 | 0.000526721 |
| Lotus japonicus | chr3 | 6 | CH_lja_523 | 2 | 2 | 0.000429046 |
| Malus domestica | Chr17 | 6 | CH_mdo_1360 | 2 | 3 | 0.000682551 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_494 | 2 | 2 | 0.000225107 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_196 | 5 | 9 | 0.000000000002085 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_360 | 4 | 8 | 0.00000000734453 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_677 | 2 | 2 | 0.000346801 |
| Quercus lobata | 9 | 6 | CH_qlo_574 | 4 | 12 | 0.00000000102152 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_224 | 4 | 6 | 0.0000000013983 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_720 | 3 | 19 | 0.000495206 |
| Salix brachista | GWHAAZH00000007 | 6 | CH_sbr_596 | 2 | 2 | 0.000378084 |
| Tripterygium wilfordii | NC_052237.1 | 6 | CH_twi_453 | 2 | 2 | 0.000334504 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_439 | 2 | 2 | 0.000193842 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |