Functional clusters
Information
- Type InterPro
- Description Threonine-tRNA ligase, class IIa
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_280 | 2 | 2 | 0.00024077 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_297 | 4 | 41 | 0.0000013064 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1197 | 3 | 13 | 0.0000323215 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_146 | 3 | 5 | 0.00000523797 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_819 | 3 | 5 | 0.00000102747 |
| Hydrangea macrophylla | Hma1.2p1_0405F.1 | 5 | CH_hma_84 | 3 | 3 | 0.0000000185113 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_681 | 2 | 2 | 0.000524824 |
| Malus domestica | Chr15 | 5 | CH_mdo_170 | 5 | 7 | 0.00000000000378576 |
| Malus domestica | Chr00 | 5 | CH_mdo_620 | 3 | 3 | 0.00000209019 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_676 | 2 | 2 | 0.000346801 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1393 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_782 | 2 | 2 | 0.000193592 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_595 | 2 | 2 | 0.000378084 |
| Sapria himalayana | scaffold136_644153 | 5 | CH_shi_261 | 2 | 2 | 0.0000571804 |
| Trochodendron aralioides | group0 | 5 | CH_tar_871 | 2 | 2 | 0.000600366 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_286 | 4 | 36 | 0.00000211898 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_280 | 2 | 2 | 0.00024077 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_297 | 4 | 41 | 0.0000013064 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1197 | 3 | 13 | 0.0000323215 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_146 | 3 | 5 | 0.00000523797 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_819 | 3 | 5 | 0.00000102747 |
| Hydrangea macrophylla | Hma1.2p1_0405F.1 | 6 | CH_hma_84 | 3 | 3 | 0.0000000185113 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_681 | 2 | 2 | 0.000524824 |
| Malus domestica | Chr15 | 6 | CH_mdo_170 | 5 | 7 | 0.00000000000378576 |
| Malus domestica | Chr00 | 6 | CH_mdo_620 | 3 | 3 | 0.00000209019 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_676 | 2 | 2 | 0.000346801 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1393 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_782 | 2 | 2 | 0.000193592 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_595 | 2 | 2 | 0.000378084 |
| Sapria himalayana | scaffold136_644153 | 6 | CH_shi_261 | 2 | 2 | 0.0000571804 |
| Trochodendron aralioides | group0 | 6 | CH_tar_871 | 2 | 2 | 0.000600366 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_286 | 4 | 36 | 0.00000211898 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |