Functional clusters

Information

  • Type InterPro
  • Description Amino acid/polyamine transporter I

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_823 3 3 0.0000190781
Amborella trichopoda AmTr_v1.0_scaffold00111 5 CH_atr_282 3 3 0.00000344585
Corylus avellana 2 5 CH_cav_363 3 3 0.000005996
Corylus avellana 2 5 CH_cav_794 3 10 0.000717303
Carya illinoinensis Chr15 5 CH_cil_494 3 3 0.000008875
Davidia involucrata GWHABJS00000016 5 CH_din_259 4 7 0.000000165946
Fragaria vesca Fvb2 5 CH_fve_474 3 3 0.00000921941
Magnolia biondii Chr07 5 CH_mbi_395 4 8 0.0000000931291
Micromonas commoda Chr_16 5 CH_mco_19 2 2 0.000197961
Medicago truncatula chr8 5 CH_mtr_505 4 6 0.0000000394552
Oryza sativa ssp. japonica chr01 5 CH_osa_153 5 9 0.000000000246989
Prunus persica Pp01 5 CH_ppe_488 3 3 0.0000111018
Papaver somniferum NC_039362.1 5 CH_pso_705 3 3 0.00000811618
Papaver somniferum NC_039361.1 5 CH_pso_706 3 3 0.00000811618
Populus trichocarpa Chr02 5 CH_ptr_474 3 3 0.0000130297
Quercus lobata 1 5 CH_qlo_1145 3 3 0.0000218154
Quercus lobata 5 5 CH_qlo_121 10 18 7.45507e-23
Quercus lobata 9 5 CH_qlo_1341 3 4 0.0000872085
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_821 3 3 0.00000548298
Selaginella moellendorffii scaffold_3 5 CH_smo_161 3 3 0.0000126723
Trifolium pratense Tp57577_TGAC_v2_LG1 5 CH_tpr_179 4 5 0.0000000252088
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_362 3 3 0.0000172273
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_535 3 5 0.000172041
Vigna mungo CM024071.1 5 CH_vmu_125 4 4 0.0000000121
Zea mays 3 5 CH_zma_346 3 5 0.0000603473
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_823 3 3 0.0000190781
Amborella trichopoda AmTr_v1.0_scaffold00111 6 CH_atr_282 3 3 0.00000344585
Corylus avellana 2 6 CH_cav_363 3 3 0.000005996
Corylus avellana 2 6 CH_cav_794 3 10 0.000717303
Carya illinoinensis Chr15 6 CH_cil_494 3 3 0.000008875
Davidia involucrata GWHABJS00000016 6 CH_din_259 4 7 0.000000165946
Fragaria x ananassa Fvb2-3 6 CH_fan_732 3 3 0.0000361047
Fragaria x ananassa Fvb2-2 6 CH_fan_733 3 3 0.0000361047
Fragaria vesca Fvb2 6 CH_fve_474 3 3 0.00000921941
Magnolia biondii Chr07 6 CH_mbi_395 4 8 0.0000000931291
Micromonas commoda Chr_16 6 CH_mco_19 2 2 0.000197961
Medicago truncatula chr8 6 CH_mtr_505 4 6 0.0000000394552
Oryza sativa ssp. japonica chr01 6 CH_osa_153 5 9 0.000000000246989
Prunus persica Pp01 6 CH_ppe_488 3 3 0.0000111018
Papaver somniferum NC_039362.1 6 CH_pso_705 3 3 0.00000811618
Papaver somniferum NC_039361.1 6 CH_pso_706 3 3 0.00000811618
Populus trichocarpa Chr02 6 CH_ptr_474 3 3 0.0000130297
Quercus lobata 1 6 CH_qlo_1145 3 3 0.0000218154
Quercus lobata 5 6 CH_qlo_121 10 18 7.45507e-23
Quercus lobata 9 6 CH_qlo_1341 3 4 0.0000872085
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_821 3 3 0.00000548298
Selaginella moellendorffii scaffold_3 6 CH_smo_161 3 3 0.0000126723
Trifolium pratense Tp57577_TGAC_v2_LG1 6 CH_tpr_179 4 5 0.0000000252088
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_362 3 3 0.0000172273
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_535 3 5 0.000172041
Vigna mungo CM024071.1 6 CH_vmu_125 4 4 0.0000000121
Zea mays 3 6 CH_zma_346 3 5 0.0000603473

Available child term results

Ontology identifier Description Number of clusters
IPR004756 Amino acid permease subfamily 10
IPR044566 Polyamine transporter RMV1-like 75

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001