Functional clusters

Information

  • Type InterPro
  • Description Polyamine transporter RMV1-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 5 CH_aly_663 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 5 CH_amhyb_361 2 2 0.000505051
Arabidopsis thaliana Chr1 5 CH_ath_510 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00048 5 CH_atr_473 2 2 0.000238322
Brassica carinata ChrB07 5 CH_bca_211 4 4 0.000000000053335
Brassica oleracea C5 5 CH_bol_840 2 2 0.000686409
Brassica rapa A09 5 CH_bra_600 2 2 0.000901558
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_464 2 2 0.00049675
Cannabis sativa NC_044377.1 5 CH_cansat_122 4 7 0.000000000445859
Citrus clementina scaffold_5 5 CH_ccl_130 6 20 0.000000000000678815
Cardamine hirsuta Chr1 5 CH_chi_768 2 2 0.000691204
Carya illinoinensis Chr14 5 CH_cil_795 2 2 0.000619828
Carica papaya supercontig_119 5 CH_cpa_644 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_3107 5 CH_cqu_814 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_2088 5 CH_cqu_815 2 2 0.000284293
Capsella rubella scaffold_1 5 CH_cru_637 2 2 0.000731154
Durio zibethinus NW_019167871.1 5 CH_dzi_220 3 3 0.000000386688
Eutrema salsugineum scaffold_5 5 CH_esa_501 2 2 0.000761499
Fragaria vesca Fvb3 5 CH_fve_480 3 7 0.0000101976
Hydrangea macrophylla Hma1.2p1_0196F.1 5 CH_hma_621 2 2 0.000666519
Lonicera japonica GWHAAZE00000005 5 CH_lonja_1206 2 2 0.000898311
Magnolia biondii Chr01 5 CH_mbi_311 3 4 0.000000014152
Malus domestica Chr06 5 CH_mdo_335 4 9 0.00000000679835
Malus domestica Chr11 5 CH_mdo_595 3 4 0.00000142347
Manihot esculenta Chromosome03 5 CH_mes_354 3 4 0.0000012527
Olea europaea chr16 5 CH_oeu_655 2 2 0.000800683
Oryza sativa ssp. japonica chr03 5 CH_osa_189 4 9 0.00000000194806
Petunia axillaris Peaxi162Scf00100 5 CH_pax_115 4 5 0.000000000658155
Prunus persica Pp06 5 CH_ppe_345 3 3 0.000000166944
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_913 3 11 0.0000220106
Rhododendron simsii chr07 5 CH_rsi_516 3 4 0.00000299772
Salix brachista GWHAAZH00000001 5 CH_sbr_644 2 2 0.00063014
Trochodendron aralioides group15 5 CH_tar_56 5 6 0.0000000000000122784
Tripterygium wilfordii NC_052246.1 5 CH_twi_487 2 2 0.000557507
Vitis vinifera chr2 5 CH_vvi_292 3 3 0.000000173574
Zea mays 1 5 CH_zma_208 3 5 0.000000784212
Arabidopsis lyrata scaffold_1 6 CH_aly_663 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 6 CH_amhyb_361 2 2 0.000505051
Arabidopsis thaliana Chr1 6 CH_ath_510 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00048 6 CH_atr_473 2 2 0.000238322
Brassica carinata ChrB07 6 CH_bca_211 4 4 0.000000000053335
Brassica oleracea C5 6 CH_bol_840 2 2 0.000686409
Brassica rapa A09 6 CH_bra_600 2 2 0.000901558
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_464 2 2 0.00049675
Cannabis sativa NC_044377.1 6 CH_cansat_122 4 7 0.000000000445859
Citrus clementina scaffold_5 6 CH_ccl_130 6 20 0.000000000000678815
Cardamine hirsuta Chr1 6 CH_chi_768 2 2 0.000691204
Carya illinoinensis Chr14 6 CH_cil_795 2 2 0.000619828
Carica papaya supercontig_119 6 CH_cpa_644 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_3107 6 CH_cqu_814 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_2088 6 CH_cqu_815 2 2 0.000284293
Capsella rubella scaffold_1 6 CH_cru_637 2 2 0.000731154
Durio zibethinus NW_019167871.1 6 CH_dzi_220 3 3 0.000000386688
Eutrema salsugineum scaffold_5 6 CH_esa_501 2 2 0.000761499
Fragaria x ananassa Fvb3-2 6 CH_fan_750 3 7 0.0000413164
Fragaria x ananassa Fvb3-1 6 CH_fan_751 3 7 0.0000413164
Fragaria x ananassa Fvb3-4 6 CH_fan_783 3 8 0.0000660956
Fragaria vesca Fvb3 6 CH_fve_480 3 7 0.0000101976
Hydrangea macrophylla Hma1.2p1_0196F.1 6 CH_hma_621 2 2 0.000666519
Lonicera japonica GWHAAZE00000005 6 CH_lonja_1206 2 2 0.000898311
Magnolia biondii Chr01 6 CH_mbi_311 3 4 0.000000014152
Malus domestica Chr06 6 CH_mdo_335 4 9 0.00000000679835
Malus domestica Chr11 6 CH_mdo_595 3 4 0.00000142347
Manihot esculenta Chromosome03 6 CH_mes_354 3 4 0.0000012527
Olea europaea chr16 6 CH_oeu_655 2 2 0.000800683
Oryza sativa ssp. japonica chr03 6 CH_osa_189 4 9 0.00000000194806
Petunia axillaris Peaxi162Scf00100 6 CH_pax_115 4 5 0.000000000658155
Prunus persica Pp06 6 CH_ppe_345 3 3 0.000000166944
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_913 3 11 0.0000220106
Rhododendron simsii chr07 6 CH_rsi_516 3 4 0.00000299772
Salix brachista GWHAAZH00000001 6 CH_sbr_644 2 2 0.00063014
Trochodendron aralioides group15 6 CH_tar_56 5 6 0.0000000000000122784
Tripterygium wilfordii NC_052246.1 6 CH_twi_487 2 2 0.000557507
Vitis vinifera chr2 6 CH_vvi_292 3 3 0.000000173574
Zea mays 1 6 CH_zma_208 3 5 0.000000784212

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001