Functional clusters
Information
- Type InterPro
- Description Histone H2A
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_122 | 5 | 8 | 0.00000000012345 |
| Cannabis sativa | NC_044372.1 | 5 | CH_cansat_146 | 4 | 5 | 0.00000000425036 |
| Glycine max | Gm15 | 5 | CH_gma_462 | 3 | 3 | 0.00000497029 |
| Glycine max | Gm13 | 5 | CH_gma_688 | 3 | 7 | 0.000173729 |
| Lotus japonicus | chr3 | 5 | CH_lja_280 | 3 | 3 | 0.00000219371 |
| Medicago truncatula | chr7 | 5 | CH_mtr_811 | 3 | 3 | 0.00000740663 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_31 | 7 | 7 | 1.87926e-18 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_365 | 3 | 3 | 0.0000133715 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_366 | 3 | 3 | 0.0000133715 |
| Phaseolus vulgaris | scaffold_15 | 5 | CH_pvu_209 | 4 | 6 | 0.000000017856 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1365 | 5 | 26 | 0.00000263063 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_17 | 12 | 17 | 3.56166e-30 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_51 | 6 | 6 | 2.12602e-16 |
| Solanum tuberosum | ST4.03ch05 | 5 | CH_stu_51 | 8 | 11 | 3.54537e-20 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_143 | 4 | 5 | 0.00000000465108 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_323 | 3 | 3 | 0.00000589355 |
| Vigna mungo | CM024079.1 | 5 | CH_vmu_213 | 3 | 3 | 0.00000103334 |
| Vitis vinifera | chr7 | 5 | CH_vvi_223 | 4 | 5 | 0.00000000900807 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_122 | 5 | 8 | 0.00000000012345 |
| Cannabis sativa | NC_044372.1 | 6 | CH_cansat_146 | 4 | 5 | 0.00000000425036 |
| Glycine max | Gm15 | 6 | CH_gma_462 | 3 | 3 | 0.00000497029 |
| Glycine max | Gm13 | 6 | CH_gma_688 | 3 | 7 | 0.000173729 |
| Lotus japonicus | chr3 | 6 | CH_lja_280 | 3 | 3 | 0.00000219371 |
| Medicago truncatula | chr7 | 6 | CH_mtr_811 | 3 | 3 | 0.00000740663 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_31 | 7 | 7 | 1.87926e-18 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_365 | 3 | 3 | 0.0000133715 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_366 | 3 | 3 | 0.0000133715 |
| Phaseolus vulgaris | scaffold_15 | 6 | CH_pvu_209 | 4 | 6 | 0.000000017856 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1365 | 5 | 26 | 0.00000263063 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_17 | 12 | 17 | 3.56166e-30 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_51 | 6 | 6 | 2.12602e-16 |
| Solanum tuberosum | ST4.03ch05 | 6 | CH_stu_51 | 8 | 11 | 3.54537e-20 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_143 | 4 | 5 | 0.00000000465108 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_323 | 3 | 3 | 0.00000589355 |
| Vigna mungo | CM024079.1 | 6 | CH_vmu_213 | 3 | 3 | 0.00000103334 |
| Vitis vinifera | chr7 | 6 | CH_vvi_223 | 4 | 5 | 0.00000000900807 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |