Functional clusters

Information

  • Type InterPro
  • Description Receptor, ligand binding region

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 5 CH_acertr_423 3 3 0.00000608328
Aquilegia oxysepala CHR07 5 CH_aox_3 11 17 1.8328e-25
Aquilegia oxysepala CHR04 5 CH_aox_77 5 6 0.000000000220941
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 5 CH_arhy_517 4 7 0.000000185865
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 5 CH_arhy_766 3 3 0.0000104466
Brassica oleracea C7 5 CH_bol_422 3 3 0.00000794891
Camellia sinensis var. sinensis Chr14 5 CH_camsi_423 5 14 0.0000000214379
Capsicum annuum PGAv.1.6.scaffold1030 5 CH_can_376 4 15 0.00000164475
Corylus avellana 5 5 CH_cav_676 3 4 0.000348089
Citrus clementina scaffold_1 5 CH_ccl_151 5 5 0.0000000000114302
Citrus clementina scaffold_1 5 CH_ccl_180 5 6 0.0000000000685362
Carya illinoinensis Chr08 5 CH_cil_123 6 6 0.000000000000108015
Davidia involucrata GWHABJS00000003 5 CH_din_92 7 17 0.000000000000160196
Eucalyptus grandis Chr03 5 CH_egr_1129 3 3 0.000107006
Eucalyptus grandis Chr03 5 CH_egr_18 21 36 6.85531e-48
Gossypium raimondii Chr01 5 CH_gra_192 4 4 0.00000000179182
Helianthus annuus HanXRQChr01 5 CH_han_685 4 11 0.0000092793
Hydrangea macrophylla Hma1.2p1_0156F.1 5 CH_hma_495 3 7 0.00023535
Magnolia biondii Chr11 5 CH_mbi_832 3 6 0.000108852
Magnolia biondii Chr02 5 CH_mbi_833 3 6 0.000108852
Malus domestica Chr15 5 CH_mdo_194 5 5 0.0000000000189506
Medicago truncatula chr5 5 CH_mtr_1019 3 8 0.0000963116
Olea europaea chr11 5 CH_oeu_373 3 4 0.0000693716
Oryza sativa ssp. japonica chr09 5 CH_osa_40 8 20 5.84014e-19
Petunia axillaris Peaxi162Scf00027 5 CH_pax_377 3 5 0.0000415493
Prunus persica Pp07 5 CH_ppe_147 6 6 0.000000000000199562
Papaver somniferum NC_039358.1 5 CH_pso_371 5 21 0.00000000788493
Populus trichocarpa Chr06 5 CH_ptr_90 7 7 2.52353e-16
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_268 7 15 0.0000000000036269
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_279 7 16 0.00000000000644015
Salvia bowleyana GWHASIU00000008 5 CH_sbo_101 7 13 5.75108e-16
Simmondsia chinensis GWHAASQ00000021 5 CH_sci_158 4 11 0.000000435889
Sequoiadendron giganteum chr5 5 CH_sgi_105 15 39 6.69226e-27
Solanum tuberosum ST4.03ch03 5 CH_stu_439 3 3 0.00000220596
Solanum tuberosum ST4.03ch06 5 CH_stu_531 3 5 0.0000220475
Trochodendron aralioides group4 5 CH_tar_408 4 9 0.00000744277
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_36 7 8 2.0441e-17
Vitis vinifera chr19 5 CH_vvi_797 3 8 0.000980549
Acer truncatum chr6 6 CH_acertr_423 3 3 0.00000608328
Aquilegia oxysepala CHR07 6 CH_aox_3 11 17 1.8328e-25
Aquilegia oxysepala CHR04 6 CH_aox_77 5 6 0.000000000220941
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 6 CH_arhy_517 4 7 0.000000185865
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 6 CH_arhy_766 3 3 0.0000104466
Brassica oleracea C7 6 CH_bol_422 3 3 0.00000794891
Camellia sinensis var. sinensis Chr14 6 CH_camsi_423 5 14 0.0000000214379
Capsicum annuum PGAv.1.6.scaffold1030 6 CH_can_376 4 15 0.00000164475
Corylus avellana 5 6 CH_cav_676 3 4 0.000348089
Citrus clementina scaffold_1 6 CH_ccl_151 5 5 0.0000000000114302
Citrus clementina scaffold_1 6 CH_ccl_180 5 6 0.0000000000685362
Carya illinoinensis Chr08 6 CH_cil_123 6 6 0.000000000000108015
Cucumis melo chr03 6 CH_cme_78 5 5 0.00000000000789372
Davidia involucrata GWHABJS00000003 6 CH_din_92 7 17 0.000000000000160196
Eucalyptus grandis Chr03 6 CH_egr_1129 3 3 0.000107006
Eucalyptus grandis Chr03 6 CH_egr_18 21 36 6.85531e-48
Fragaria x ananassa Fvb2-4 6 CH_fan_210 5 7 0.00000000118824
Fragaria x ananassa Fvb2-4 6 CH_fan_800 3 3 0.0000757223
Fragaria x ananassa Fvb2-1 6 CH_fan_90 7 13 0.0000000000000693777
Gossypium raimondii Chr01 6 CH_gra_192 4 4 0.00000000179182
Helianthus annuus HanXRQChr01 6 CH_han_685 4 11 0.0000092793
Hydrangea macrophylla Hma1.2p1_0156F.1 6 CH_hma_495 3 7 0.00023535
Magnolia biondii Chr11 6 CH_mbi_832 3 6 0.000108852
Magnolia biondii Chr02 6 CH_mbi_833 3 6 0.000108852
Malus domestica Chr15 6 CH_mdo_194 5 5 0.0000000000189506
Medicago truncatula chr5 6 CH_mtr_1019 3 8 0.0000963116
Olea europaea chr11 6 CH_oeu_373 3 4 0.0000693716
Oryza sativa ssp. japonica chr09 6 CH_osa_40 8 20 5.84014e-19
Petunia axillaris Peaxi162Scf00027 6 CH_pax_377 3 5 0.0000415493
Prunus persica Pp07 6 CH_ppe_147 6 6 0.000000000000199562
Papaver somniferum NC_039358.1 6 CH_pso_371 5 21 0.00000000788493
Populus trichocarpa Chr06 6 CH_ptr_90 7 7 2.52353e-16
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_268 7 15 0.0000000000036269
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_279 7 16 0.00000000000644015
Salvia bowleyana GWHASIU00000008 6 CH_sbo_101 7 13 5.75108e-16
Simmondsia chinensis GWHAASQ00000021 6 CH_sci_158 4 11 0.000000435889
Sequoiadendron giganteum chr5 6 CH_sgi_105 15 39 6.69226e-27
Solanum tuberosum ST4.03ch03 6 CH_stu_439 3 3 0.00000220596
Solanum tuberosum ST4.03ch06 6 CH_stu_531 3 5 0.0000220475
Trochodendron aralioides group4 6 CH_tar_408 4 9 0.00000744277
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_36 7 8 2.0441e-17
Vitis vinifera chr19 6 CH_vvi_797 3 8 0.000980549

Available child term results

Ontology identifier Description Number of clusters
IPR044440 Plant glutamate receptor, periplasmic ligand-binding domain 85

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001