Functional clusters
Information
- Type InterPro
- Description Plant glutamate receptor, periplasmic ligand-binding domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group0 | 5 | CH_ach_577 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_353 | 3 | 3 | 0.00000533263 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 5 | CH_atr_8 | 14 | 24 | 3.3484e-35 |
| Brassica carinata | ChrB06 | 5 | CH_bca_1268 | 3 | 5 | 0.0000626044 |
| Brassica napus | A02 | 5 | CH_bna_795 | 3 | 3 | 0.00000952166 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_85 | 5 | 7 | 0.00000000000376739 |
| Capsicum annuum | PGAv.1.6.scaffold308 | 5 | CH_can_387 | 3 | 3 | 0.00000225218 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_363 | 3 | 3 | 0.000019789 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_91 | 6 | 8 | 0.000000000000277733 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_185 | 4 | 4 | 0.00000000384034 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_174 | 4 | 4 | 0.00000000454548 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_293 | 3 | 4 | 0.0000234037 |
| Durio zibethinus | NW_019167938.1 | 5 | CH_dzi_457 | 3 | 8 | 0.000174597 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_425 | 3 | 3 | 0.00000785289 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_1237 | 3 | 4 | 0.000271956 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_950 | 4 | 9 | 0.0000102389 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_74 | 7 | 7 | 6.31759e-17 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_147 | 6 | 11 | 0.000000000038519 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_696 | 3 | 4 | 0.00000865652 |
| Glycine max | Gm09 | 5 | CH_gma_478 | 3 | 3 | 0.00000707942 |
| Glycine max | Gm06 | 5 | CH_gma_536 | 3 | 4 | 0.0000283071 |
| Glycine max | Gm13 | 5 | CH_gma_678 | 3 | 6 | 0.000141429 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_249 | 3 | 3 | 0.000000908977 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_631 | 3 | 3 | 0.00000952783 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_343 | 5 | 18 | 0.0000000896353 |
| Malus domestica | Chr09 | 5 | CH_mdo_745 | 3 | 3 | 0.0000129079 |
| Petunia axillaris | Peaxi162Scf00045 | 5 | CH_pax_111 | 4 | 4 | 0.000000000517213 |
| Prunus persica | Pp04 | 5 | CH_ppe_554 | 3 | 3 | 0.0000414022 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_612 | 3 | 3 | 0.00000197956 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_356 | 3 | 4 | 0.0000071239 |
| Quercus lobata | 8 | 5 | CH_qlo_815 | 4 | 6 | 0.000000146938 |
| Salix brachista | GWHAAZH00000004 | 5 | CH_sbr_167 | 5 | 9 | 0.000000000978007 |
| Salix brachista | GWHAAZH00000011 | 5 | CH_sbr_482 | 4 | 21 | 0.0000665043 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_883 | 4 | 4 | 0.0000000109137 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_116 | 5 | 5 | 0.000000000000114576 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_74 | 5 | 5 | 0.0000000000000232523 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_310 | 3 | 3 | 0.00000312875 |
| Tripterygium wilfordii | NC_052240.1 | 5 | CH_twi_306 | 3 | 5 | 0.0000169622 |
| Utricularia gibba | unitig_748 | 5 | CH_ugi_26 | 4 | 5 | 0.00000000273365 |
| Utricularia gibba | unitig_32 | 5 | CH_ugi_71 | 3 | 3 | 0.0000016662 |
| Actinidia chinensis | Lachesis_group0 | 6 | CH_ach_577 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_353 | 3 | 3 | 0.00000533263 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 6 | CH_atr_8 | 14 | 24 | 3.3484e-35 |
| Brassica carinata | ChrB06 | 6 | CH_bca_1268 | 3 | 5 | 0.0000626044 |
| Brassica napus | A02 | 6 | CH_bna_795 | 3 | 3 | 0.00000952166 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_85 | 5 | 7 | 0.00000000000376739 |
| Capsicum annuum | PGAv.1.6.scaffold308 | 6 | CH_can_387 | 3 | 3 | 0.00000225218 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_363 | 3 | 3 | 0.000019789 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_91 | 6 | 8 | 0.000000000000277733 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_185 | 4 | 4 | 0.00000000384034 |
| Cucumis melo | chr07 | 6 | CH_cme_220 | 3 | 3 | 0.00000303748 |
| Cucumis melo | chr03 | 6 | CH_cme_221 | 3 | 3 | 0.00000303748 |
| Cucumis melo | chr11 | 6 | CH_cme_286 | 3 | 6 | 0.0000606889 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_174 | 4 | 4 | 0.00000000454548 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_293 | 3 | 4 | 0.0000234037 |
| Durio zibethinus | NW_019167938.1 | 6 | CH_dzi_457 | 3 | 8 | 0.000174597 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_425 | 3 | 3 | 0.00000785289 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_1237 | 3 | 4 | 0.000271956 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_950 | 4 | 9 | 0.0000102389 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_74 | 7 | 7 | 6.31759e-17 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_1052 | 3 | 6 | 0.000469399 |
| Fragaria x ananassa | Fvb2-3 | 6 | CH_fan_699 | 3 | 4 | 0.0000235014 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_147 | 6 | 11 | 0.000000000038519 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_696 | 3 | 4 | 0.00000865652 |
| Glycine max | Gm09 | 6 | CH_gma_478 | 3 | 3 | 0.00000707942 |
| Glycine max | Gm06 | 6 | CH_gma_536 | 3 | 4 | 0.0000283071 |
| Glycine max | Gm13 | 6 | CH_gma_678 | 3 | 6 | 0.000141429 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_249 | 3 | 3 | 0.000000908977 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_631 | 3 | 3 | 0.00000952783 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_343 | 5 | 18 | 0.0000000896353 |
| Malus domestica | Chr09 | 6 | CH_mdo_745 | 3 | 3 | 0.0000129079 |
| Petunia axillaris | Peaxi162Scf00045 | 6 | CH_pax_111 | 4 | 4 | 0.000000000517213 |
| Prunus persica | Pp04 | 6 | CH_ppe_554 | 3 | 3 | 0.0000414022 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_612 | 3 | 3 | 0.00000197956 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_356 | 3 | 4 | 0.0000071239 |
| Quercus lobata | 8 | 6 | CH_qlo_815 | 4 | 6 | 0.000000146938 |
| Salix brachista | GWHAAZH00000004 | 6 | CH_sbr_167 | 5 | 9 | 0.000000000978007 |
| Salix brachista | GWHAAZH00000011 | 6 | CH_sbr_482 | 4 | 21 | 0.0000665043 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_883 | 4 | 4 | 0.0000000109137 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_116 | 5 | 5 | 0.000000000000114576 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_74 | 5 | 5 | 0.0000000000000232523 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_310 | 3 | 3 | 0.00000312875 |
| Tripterygium wilfordii | NC_052240.1 | 6 | CH_twi_306 | 3 | 5 | 0.0000169622 |
| Utricularia gibba | unitig_748 | 6 | CH_ugi_26 | 4 | 5 | 0.00000000273365 |
| Utricularia gibba | unitig_32 | 6 | CH_ugi_71 | 3 | 3 | 0.0000016662 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |