Functional clusters
Information
- Type InterPro
- Description Glycoside hydrolase, family 3, N-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_207 | 4 | 5 | 0.0000000125041 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_208 | 4 | 8 | 0.0000000603809 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_170 | 4 | 8 | 0.00000000673696 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1465 | 3 | 5 | 0.000134241 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1466 | 3 | 5 | 0.000134241 |
| Brassica carinata | ChrB01 | 5 | CH_bca_539 | 4 | 6 | 0.000000101152 |
| Brassica napus | C03 | 5 | CH_bna_1168 | 3 | 6 | 0.000202384 |
| Brassica oleracea | C3 | 5 | CH_bol_118 | 5 | 10 | 0.000000000211694 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_20 | 12 | 28 | 4.72846e-27 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_840 | 3 | 3 | 0.0000172085 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 5 | CH_can_258 | 4 | 5 | 0.0000000201198 |
| Coffea canephora | chr6 | 5 | CH_ccan_108 | 4 | 14 | 0.0000000020954 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_590 | 3 | 6 | 0.000164487 |
| Carya illinoinensis | Chr14 | 5 | CH_cil_483 | 3 | 3 | 0.0000065698 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_234 | 4 | 8 | 0.000000111893 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_53 | 6 | 8 | 0.0000000000000670625 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_192 | 7 | 7 | 2.08302e-18 |
| Lupinus albus | Lalb_Chr21 | 5 | CH_lal_317 | 3 | 3 | 0.00000549518 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_273 | 4 | 6 | 0.000000011117 |
| Malus domestica | Chr02 | 5 | CH_mdo_700 | 3 | 3 | 0.00000706654 |
| Medicago truncatula | chr6 | 5 | CH_mtr_392 | 4 | 4 | 0.00000000184259 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_331 | 3 | 5 | 0.0000158281 |
| Olea europaea | scaffold773 | 5 | CH_oeu_119 | 4 | 5 | 0.0000000288482 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_116 | 5 | 6 | 0.0000000000479835 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_179 | 4 | 4 | 0.0000000112244 |
| Prunus persica | Pp07 | 5 | CH_ppe_245 | 5 | 10 | 0.00000000153714 |
| Populus trichocarpa | Chr09 | 5 | CH_ptr_384 | 4 | 10 | 0.00000107432 |
| Quercus lobata | 1 | 5 | CH_qlo_1160 | 3 | 3 | 0.0000261696 |
| Quercus lobata | 4 | 5 | CH_qlo_463 | 5 | 5 | 0.0000000000173018 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_572 | 3 | 3 | 0.000012643 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1376 | 3 | 3 | 0.00000344948 |
| Sapria himalayana | scaffold14_12630789 | 5 | CH_shi_477 | 2 | 2 | 0.000343083 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_443 | 3 | 3 | 0.00000421679 |
| Schrenkiella parvula | ch5-1 | 5 | CH_spa_69 | 4 | 4 | 0.0000000019989 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_386 | 3 | 3 | 0.0000024216 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_459 | 3 | 3 | 0.0000038171 |
| Tripterygium wilfordii | NC_052238.1 | 5 | CH_twi_289 | 3 | 3 | 0.00000943657 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_192 | 4 | 5 | 0.000000106511 |
| Vanilla planifolia | JADCNL010000048.1 | 5 | CH_vpl_262 | 3 | 3 | 0.00000668259 |
| Vitis vinifera | chr6 | 5 | CH_vvi_237 | 4 | 4 | 0.0000000197393 |
| Acer truncatum | chr3 | 6 | CH_acertr_207 | 4 | 5 | 0.0000000125041 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_208 | 4 | 8 | 0.0000000603809 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_170 | 4 | 8 | 0.00000000673696 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1465 | 3 | 5 | 0.000134241 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1466 | 3 | 5 | 0.000134241 |
| Brassica carinata | ChrB01 | 6 | CH_bca_539 | 4 | 6 | 0.000000101152 |
| Brassica napus | C03 | 6 | CH_bna_1168 | 3 | 6 | 0.000202384 |
| Brassica oleracea | C3 | 6 | CH_bol_118 | 5 | 10 | 0.000000000211694 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_20 | 12 | 28 | 4.72846e-27 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_840 | 3 | 3 | 0.0000172085 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 6 | CH_can_258 | 4 | 5 | 0.0000000201198 |
| Coffea canephora | chr6 | 6 | CH_ccan_108 | 4 | 14 | 0.0000000020954 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_590 | 3 | 6 | 0.000164487 |
| Carya illinoinensis | Chr14 | 6 | CH_cil_483 | 3 | 3 | 0.0000065698 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_234 | 4 | 8 | 0.000000111893 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_53 | 6 | 8 | 0.0000000000000670625 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_192 | 7 | 7 | 2.08302e-18 |
| Lupinus albus | Lalb_Chr21 | 6 | CH_lal_317 | 3 | 3 | 0.00000549518 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_273 | 4 | 6 | 0.000000011117 |
| Malus domestica | Chr02 | 6 | CH_mdo_700 | 3 | 3 | 0.00000706654 |
| Medicago truncatula | chr6 | 6 | CH_mtr_392 | 4 | 4 | 0.00000000184259 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_331 | 3 | 5 | 0.0000158281 |
| Olea europaea | scaffold773 | 6 | CH_oeu_119 | 4 | 5 | 0.0000000288482 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_116 | 5 | 6 | 0.0000000000479835 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_179 | 4 | 4 | 0.0000000112244 |
| Prunus persica | Pp07 | 6 | CH_ppe_245 | 5 | 10 | 0.00000000153714 |
| Populus trichocarpa | Chr09 | 6 | CH_ptr_384 | 4 | 10 | 0.00000107432 |
| Quercus lobata | 1 | 6 | CH_qlo_1160 | 3 | 3 | 0.0000261696 |
| Quercus lobata | 4 | 6 | CH_qlo_463 | 5 | 5 | 0.0000000000173018 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_572 | 3 | 3 | 0.000012643 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1376 | 3 | 3 | 0.00000344948 |
| Sapria himalayana | scaffold14_12630789 | 6 | CH_shi_477 | 2 | 2 | 0.000343083 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_443 | 3 | 3 | 0.00000421679 |
| Schrenkiella parvula | ch5-1 | 6 | CH_spa_69 | 4 | 4 | 0.0000000019989 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_386 | 3 | 3 | 0.0000024216 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_459 | 3 | 3 | 0.0000038171 |
| Tripterygium wilfordii | NC_052238.1 | 6 | CH_twi_289 | 3 | 3 | 0.00000943657 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_192 | 4 | 5 | 0.000000106511 |
| Vanilla planifolia | JADCNL010000048.1 | 6 | CH_vpl_262 | 3 | 3 | 0.00000668259 |
| Vitis vinifera | chr6 | 6 | CH_vvi_237 | 4 | 4 | 0.0000000197393 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |