Functional clusters
Information
- Type InterPro
- Description FKBP-type peptidyl-prolyl cis-trans isomerase domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group9 | 5 | CH_ach_223 | 3 | 3 | 0.0000145006 |
| Avicennia marina | ScioBoG_22153_HRSCAF_22259 | 5 | CH_ama_106 | 3 | 4 | 0.0000686497 |
| Brassica carinata | ChrC06 | 5 | CH_bca_1149 | 3 | 3 | 0.0000222828 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1852 | 4 | 33 | 0.000538207 |
| Brassica carinata | ChrB08 | 5 | CH_bca_2061 | 3 | 7 | 0.000778465 |
| Brassica napus | C03 | 5 | CH_bna_1321 | 3 | 6 | 0.000390421 |
| Brassica oleracea | C3 | 5 | CH_bol_626 | 4 | 31 | 0.000102697 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 5 | CH_bvu_330 | 3 | 4 | 0.000063298 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_487 | 4 | 42 | 0.000286552 |
| Capsicum annuum | PGAv.1.6.scaffold128 | 5 | CH_can_282 | 4 | 6 | 0.0000000603309 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_684 | 3 | 3 | 0.0000090942 |
| Medicago truncatula | chr8 | 5 | CH_mtr_510 | 4 | 5 | 0.0000000425529 |
| Medicago truncatula | chr8 | 5 | CH_mtr_574 | 6 | 61 | 0.000000157676 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_675 | 3 | 8 | 0.000379993 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_178 | 4 | 5 | 0.0000000188465 |
| Populus trichocarpa | Chr12 | 5 | CH_ptr_591 | 3 | 5 | 0.000163987 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1050 | 3 | 5 | 0.0000696764 |
| Schrenkiella parvula | ch3-2 | 5 | CH_spa_190 | 3 | 3 | 0.0000164684 |
| Actinidia chinensis | Lachesis_group9 | 6 | CH_ach_223 | 3 | 3 | 0.0000145006 |
| Avicennia marina | ScioBoG_22153_HRSCAF_22259 | 6 | CH_ama_106 | 3 | 4 | 0.0000686497 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1149 | 3 | 3 | 0.0000222828 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1852 | 4 | 33 | 0.000538207 |
| Brassica carinata | ChrB08 | 6 | CH_bca_2061 | 3 | 7 | 0.000778465 |
| Brassica napus | C03 | 6 | CH_bna_1321 | 3 | 6 | 0.000390421 |
| Brassica oleracea | C3 | 6 | CH_bol_626 | 4 | 31 | 0.000102697 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 6 | CH_bvu_330 | 3 | 4 | 0.000063298 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_487 | 4 | 42 | 0.000286552 |
| Capsicum annuum | PGAv.1.6.scaffold128 | 6 | CH_can_282 | 4 | 6 | 0.0000000603309 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_684 | 3 | 3 | 0.0000090942 |
| Medicago truncatula | chr8 | 6 | CH_mtr_510 | 4 | 5 | 0.0000000425529 |
| Medicago truncatula | chr8 | 6 | CH_mtr_574 | 6 | 61 | 0.000000157676 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_675 | 3 | 8 | 0.000379993 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_178 | 4 | 5 | 0.0000000188465 |
| Populus trichocarpa | Chr12 | 6 | CH_ptr_591 | 3 | 5 | 0.000163987 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1050 | 3 | 5 | 0.0000696764 |
| Schrenkiella parvula | ch3-2 | 6 | CH_spa_190 | 3 | 3 | 0.0000164684 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |