Functional clusters

Information

  • Type Gene Ontology
  • Description oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 3 CH_acertr_186 4 5 0.00000142093
Actinidia chinensis Lachesis_group3 3 CH_ach_195 3 4 0.000325887
Arabidopsis lyrata scaffold_6 3 CH_aly_84 4 4 0.0000000508201
Aquilegia oxysepala CHR02 3 CH_aox_255 3 4 0.000442507
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 3 CH_arhy_139 6 6 0.00000000000406566
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_290 5 9 0.000000261511
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 3 CH_arhy_418 4 6 0.0000159291
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_61 9 10 2.85562e-19
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 3 CH_arhy_648 3 3 0.000539128
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 3 CH_arhy_649 3 3 0.000539128
Amborella trichopoda AmTr_v1.0_scaffold00104 3 CH_atr_159 4 6 0.00000953916
Amborella trichopoda AmTr_v1.0_scaffold00020 3 CH_atr_17 9 10 2.39264e-19
Amborella trichopoda AmTr_v1.0_scaffold00066 3 CH_atr_24 8 9 1.08395e-16
Amborella trichopoda AmTr_v1.0_scaffold00013 3 CH_atr_266 3 3 0.000292102
Brassica carinata ChrB01 3 CH_bca_580 4 16 0.0000795112
Beta vulgaris Chr8_EL10_PGA_scaffold4 3 CH_bvu_170 3 3 0.0000672966
Beta vulgaris Chr3_EL10_PGA_scaffold7 3 CH_bvu_171 3 3 0.0000672966
Camellia sinensis var. sinensis Chr9 3 CH_camsi_30 13 80 2.53839e-19
Camellia sinensis var. sinensis Contig795 3 CH_camsi_57 7 9 0.0000000000000114763
Capsicum annuum PGAv.1.6.scaffold500 3 CH_can_33 9 11 4.22855e-19
Corylus avellana 9 3 CH_cav_59 6 9 0.0000000000612053
Coffea canephora chr3 3 CH_ccan_13 7 53 0.000000000000178182
Coffea canephora chr3 3 CH_ccan_43 6 69 0.000000000582609
Carpinus fangiana Cfa03 3 CH_cfa_11 10 11 4.17992e-23
Carpinus fangiana Cfa03 3 CH_cfa_241 3 3 0.000148814
Cardamine hirsuta Chr1 3 CH_chi_109 4 4 0.000000058363
Carya illinoinensis Chr01 3 CH_cil_112 6 7 0.00000000000884723
Carya illinoinensis Chr02 3 CH_cil_247 4 5 0.00000198985
Citrullus lanatus CG_Chr09 3 CH_cla_80 5 25 0.00000908701
Cucumis melo chr01 3 CH_cme_98 4 4 0.000000109928
Chenopodium quinoa C_Quinoa_Scaffold_2187 3 CH_cqu_216 4 5 0.00000154849
Chenopodium quinoa C_Quinoa_Scaffold_1611 3 CH_cqu_404 3 3 0.00019248
Chenopodium quinoa C_Quinoa_Scaffold_4480 3 CH_cqu_536 3 4 0.00076897
Capsella rubella scaffold_6 3 CH_cru_107 4 4 0.0000000479879
Davidia involucrata GWHABJS00000014 3 CH_din_267 3 3 0.000141899
Davidia involucrata GWHABJS00000016 3 CH_din_46 7 13 0.00000000000103272
Durio zibethinus NW_019168048.1 3 CH_dzi_252 3 3 0.000161494
Erigeron canadensis Conyza_canadensis_scaffold:9 3 CH_eca_26 6 7 0.000000000000400426
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_272 3 3 0.0000556468
Eucalyptus grandis Chr09 3 CH_egr_128 8 8 1.11751e-17
Eucalyptus grandis Chr01 3 CH_egr_24 17 40 2.02598e-31
Eucalyptus grandis Chr03 3 CH_egr_503 4 4 0.000000692106
Fragaria x ananassa Fvb1-1 3 CH_fan_166 4 4 0.000000308562
Fragaria x ananassa Fvb6-3 3 CH_fan_247 4 6 0.00000461889
Fragaria vesca Fvb1 3 CH_fve_16 8 8 9.44938e-19
Fragaria vesca Fvb6 3 CH_fve_353 3 4 0.000545649
Gossypium hirsutum A02 3 CH_ghi_127 6 10 0.0000000000809325
Gossypium hirsutum D02 3 CH_ghi_313 4 6 0.00000349059
Glycine max Gm03 3 CH_gma_152 5 12 0.0000000690441
Glycine max Gm19 3 CH_gma_164 4 4 0.000000125741
Helianthus annuus HanXRQChr03 3 CH_han_367 4 6 0.00000431002
Helianthus annuus HanXRQChr12 3 CH_han_651 4 15 0.000387964
Lupinus albus Lalb_Chr12 3 CH_lal_260 4 12 0.0000840333
Lotus japonicus chr3 3 CH_lja_173 5 22 0.00000693032
Lonicera japonica GWHAAZE00000104 3 CH_lonja_77 7 7 8.42931e-16
Magnolia biondii Chr07 3 CH_mbi_285 6 33 0.00000153327
Magnolia biondii Chr13 3 CH_mbi_518 3 3 0.000258811
Malus domestica Chr09 3 CH_mdo_102 6 9 0.000000000120172
Malus domestica Chr15 3 CH_mdo_569 3 3 0.000289141
Malus domestica Chr02 3 CH_mdo_57 7 9 0.0000000000000860637
Malus domestica Chr15 3 CH_mdo_570 3 3 0.000289141
Malus domestica Chr09 3 CH_mdo_571 3 3 0.000289141
Manihot esculenta Chromosome05 3 CH_mes_292 3 3 0.0000849052
Manihot esculenta Chromosome01 3 CH_mes_293 3 3 0.0000849052
Medicago truncatula chr8 3 CH_mtr_136 7 20 0.0000000000201699
Medicago truncatula chr6 3 CH_mtr_372 4 6 0.0000021089
Medicago truncatula chr2 3 CH_mtr_695 3 4 0.000441991
Nelumbo nucifera chr1 3 CH_nnu_46 6 19 0.000000000602042
Punica granatum NC_045128.1 3 CH_pgr_155 4 4 0.000000400871
Punica granatum NC_045130.1 3 CH_pgr_27 8 12 0.00000000000000216086
Prunus persica Pp07 3 CH_ppe_157 5 6 0.00000000637546
Prunus persica Pp03 3 CH_ppe_57 7 7 0.00000000000000408217
Papaver somniferum NW_020620714.1 3 CH_pso_126 5 5 0.0000000000898631
Papaver somniferum NC_039358.1 3 CH_pso_341 4 7 0.00000320155
Populus trichocarpa Chr07 3 CH_ptr_216 5 11 0.000000463692
Populus trichocarpa Chr17 3 CH_ptr_29 13 40 1.15973e-21
Phaseolus vulgaris Chr10 3 CH_pvu_118 5 12 0.000000128716
Quercus lobata 10 3 CH_qlo_192 8 15 0.000000000000686839
Quercus lobata 10 3 CH_qlo_3 21 23 2.74725e-48
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_28 15 74 1.09192e-22
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_368 4 5 0.00000221319
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_474 4 8 0.0000308584
Rhododendron simsii chr09 3 CH_rsi_47 11 37 1.51371e-18
Striga asiatica scaffold12 3 CH_sas_98 3 5 0.000494057
Salix brachista GWHAAZH00000007 3 CH_sbr_71 5 5 0.000000000374044
Simmondsia chinensis GWHAASQ00000013 3 CH_sci_109 5 23 0.00000970777
Sechium edule LG08 3 CH_sed_35 6 6 0.000000000000218209
Sequoiadendron giganteum chr1 3 CH_sgi_1022 4 7 0.0000599437
Sequoiadendron giganteum chr10 3 CH_sgi_1321 3 3 0.000686763
Sequoiadendron giganteum chr8 3 CH_sgi_748 4 4 0.00000172306
Solanum pennellii Spenn-ch12 3 CH_spe_287 3 3 0.0000450488
Selenicereus undatus Scaffold_33679 3 CH_sun_125 4 17 0.000159365
Trochodendron aralioides group0 3 CH_tar_307 3 3 0.000119489
Theobroma cacao Chromosome_4 3 CH_tca_131 5 9 0.0000000330588
Theobroma cacao Chromosome_4 3 CH_tca_295 3 3 0.000114175
Tripterygium wilfordii NC_052252.1 3 CH_twi_85 5 9 0.0000000173846
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_263 3 3 0.000138078
Vigna mungo CM024077.1 3 CH_vmu_161 3 3 0.0000572346
Vanilla planifolia CM028151.1 3 CH_vpl_226 3 3 0.0000872996
Vitis vinifera chr5 3 CH_vvi_53 8 14 0.00000000000000742163
Acer truncatum chr3 4 CH_acertr_186 4 5 0.00000142093
Actinidia chinensis Lachesis_group3 4 CH_ach_195 3 4 0.000325887
Arabidopsis lyrata scaffold_6 4 CH_aly_84 4 4 0.0000000508201
Aquilegia oxysepala CHR02 4 CH_aox_255 3 4 0.000442507
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 4 CH_arhy_139 6 6 0.00000000000406566
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_290 5 9 0.000000261511
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 4 CH_arhy_418 4 6 0.0000159291
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_61 9 10 2.85562e-19
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 4 CH_arhy_648 3 3 0.000539128
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 4 CH_arhy_649 3 3 0.000539128
Amborella trichopoda AmTr_v1.0_scaffold00104 4 CH_atr_159 4 6 0.00000953916
Amborella trichopoda AmTr_v1.0_scaffold00020 4 CH_atr_17 9 10 2.39264e-19
Amborella trichopoda AmTr_v1.0_scaffold00066 4 CH_atr_24 8 9 1.08395e-16
Amborella trichopoda AmTr_v1.0_scaffold00013 4 CH_atr_266 3 3 0.000292102
Brassica carinata ChrB01 4 CH_bca_580 4 16 0.0000795112
Beta vulgaris Chr8_EL10_PGA_scaffold4 4 CH_bvu_170 3 3 0.0000672966
Beta vulgaris Chr3_EL10_PGA_scaffold7 4 CH_bvu_171 3 3 0.0000672966
Camellia sinensis var. sinensis Chr9 4 CH_camsi_30 13 80 2.53839e-19
Camellia sinensis var. sinensis Contig795 4 CH_camsi_57 7 9 0.0000000000000114763
Capsicum annuum PGAv.1.6.scaffold500 4 CH_can_33 9 11 4.22855e-19
Corylus avellana 9 4 CH_cav_59 6 9 0.0000000000612053
Coffea canephora chr3 4 CH_ccan_13 7 53 0.000000000000178182
Coffea canephora chr3 4 CH_ccan_43 6 69 0.000000000582609
Carpinus fangiana Cfa03 4 CH_cfa_11 10 11 4.17992e-23
Carpinus fangiana Cfa03 4 CH_cfa_241 3 3 0.000148814
Cardamine hirsuta Chr1 4 CH_chi_109 4 4 0.000000058363
Carya illinoinensis Chr01 4 CH_cil_112 6 7 0.00000000000884723
Carya illinoinensis Chr02 4 CH_cil_247 4 5 0.00000198985
Citrullus lanatus CG_Chr09 4 CH_cla_80 5 25 0.00000908701
Cucumis melo chr01 4 CH_cme_98 4 4 0.000000109928
Chenopodium quinoa C_Quinoa_Scaffold_2187 4 CH_cqu_216 4 5 0.00000154849
Chenopodium quinoa C_Quinoa_Scaffold_1611 4 CH_cqu_404 3 3 0.00019248
Chenopodium quinoa C_Quinoa_Scaffold_4480 4 CH_cqu_536 3 4 0.00076897
Capsella rubella scaffold_6 4 CH_cru_107 4 4 0.0000000479879
Davidia involucrata GWHABJS00000014 4 CH_din_267 3 3 0.000141899
Davidia involucrata GWHABJS00000016 4 CH_din_46 7 13 0.00000000000103272
Durio zibethinus NW_019168048.1 4 CH_dzi_252 3 3 0.000161494
Erigeron canadensis Conyza_canadensis_scaffold:9 4 CH_eca_26 6 7 0.000000000000400426
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_272 3 3 0.0000556468
Eucalyptus grandis Chr09 4 CH_egr_128 8 8 1.11751e-17
Eucalyptus grandis Chr01 4 CH_egr_24 17 40 2.02598e-31
Eucalyptus grandis Chr03 4 CH_egr_503 4 4 0.000000692106
Fragaria x ananassa Fvb1-1 4 CH_fan_166 4 4 0.000000308562
Fragaria x ananassa Fvb6-3 4 CH_fan_247 4 6 0.00000461889
Fragaria vesca Fvb1 4 CH_fve_16 8 8 9.44938e-19
Fragaria vesca Fvb6 4 CH_fve_353 3 4 0.000545649
Gossypium hirsutum A02 4 CH_ghi_127 6 10 0.0000000000809325
Gossypium hirsutum D02 4 CH_ghi_313 4 6 0.00000349059
Glycine max Gm03 4 CH_gma_152 5 12 0.0000000690441
Glycine max Gm19 4 CH_gma_164 4 4 0.000000125741
Helianthus annuus HanXRQChr03 4 CH_han_367 4 6 0.00000431002
Helianthus annuus HanXRQChr12 4 CH_han_651 4 15 0.000387964
Lupinus albus Lalb_Chr12 4 CH_lal_260 4 12 0.0000840333
Lotus japonicus chr3 4 CH_lja_173 5 22 0.00000693032
Lonicera japonica GWHAAZE00000104 4 CH_lonja_77 7 7 8.42931e-16
Magnolia biondii Chr07 4 CH_mbi_285 6 33 0.00000153327
Magnolia biondii Chr13 4 CH_mbi_518 3 3 0.000258811
Malus domestica Chr09 4 CH_mdo_102 6 9 0.000000000120172
Malus domestica Chr15 4 CH_mdo_569 3 3 0.000289141
Malus domestica Chr02 4 CH_mdo_57 7 9 0.0000000000000860637
Malus domestica Chr15 4 CH_mdo_570 3 3 0.000289141
Malus domestica Chr09 4 CH_mdo_571 3 3 0.000289141
Manihot esculenta Chromosome05 4 CH_mes_292 3 3 0.0000849052
Manihot esculenta Chromosome01 4 CH_mes_293 3 3 0.0000849052
Medicago truncatula chr8 4 CH_mtr_136 7 20 0.0000000000201699
Medicago truncatula chr6 4 CH_mtr_372 4 6 0.0000021089
Medicago truncatula chr2 4 CH_mtr_695 3 4 0.000441991
Nelumbo nucifera chr1 4 CH_nnu_46 6 19 0.000000000602042
Punica granatum NC_045128.1 4 CH_pgr_155 4 4 0.000000400871
Punica granatum NC_045130.1 4 CH_pgr_27 8 12 0.00000000000000216086
Prunus persica Pp07 4 CH_ppe_157 5 6 0.00000000637546
Prunus persica Pp03 4 CH_ppe_57 7 7 0.00000000000000408217
Papaver somniferum NW_020620714.1 4 CH_pso_126 5 5 0.0000000000898631
Papaver somniferum NC_039358.1 4 CH_pso_341 4 7 0.00000320155
Populus trichocarpa Chr07 4 CH_ptr_216 5 11 0.000000463692
Populus trichocarpa Chr17 4 CH_ptr_29 13 40 1.15973e-21
Phaseolus vulgaris Chr10 4 CH_pvu_118 5 12 0.000000128716
Quercus lobata 10 4 CH_qlo_192 8 15 0.000000000000686839
Quercus lobata 10 4 CH_qlo_3 21 23 2.74725e-48
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_28 15 74 1.09192e-22
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_368 4 5 0.00000221319
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_474 4 8 0.0000308584
Rhododendron simsii chr09 4 CH_rsi_47 11 37 1.51371e-18
Striga asiatica scaffold12 4 CH_sas_98 3 5 0.000494057
Salix brachista GWHAAZH00000007 4 CH_sbr_71 5 5 0.000000000374044
Simmondsia chinensis GWHAASQ00000013 4 CH_sci_109 5 23 0.00000970777
Sechium edule LG08 4 CH_sed_35 6 6 0.000000000000218209
Sequoiadendron giganteum chr1 4 CH_sgi_1022 4 7 0.0000599437
Sequoiadendron giganteum chr10 4 CH_sgi_1321 3 3 0.000686763
Sequoiadendron giganteum chr8 4 CH_sgi_748 4 4 0.00000172306
Solanum pennellii Spenn-ch12 4 CH_spe_287 3 3 0.0000450488
Selenicereus undatus Scaffold_33679 4 CH_sun_125 4 17 0.000159365
Trochodendron aralioides group0 4 CH_tar_307 3 3 0.000119489
Theobroma cacao Chromosome_4 4 CH_tca_131 5 9 0.0000000330588
Theobroma cacao Chromosome_4 4 CH_tca_295 3 3 0.000114175
Tripterygium wilfordii NC_052252.1 4 CH_twi_85 5 9 0.0000000173846
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_263 3 3 0.000138078
Vigna mungo CM024077.1 4 CH_vmu_161 3 3 0.0000572346
Vanilla planifolia CM028151.1 4 CH_vpl_226 3 3 0.0000872996
Vitis vinifera chr5 4 CH_vvi_53 8 14 0.00000000000000742163

Available child term results

Ontology identifier Description Number of clusters
GO:0004318 enoyl-[acyl-carrier-protein] reductase (NADH) activity 6
GO:0004665 prephenate dehydrogenase (NADP+) activity 4
GO:0008670 2,4-dienoyl-CoA reductase (NADPH) activity 16
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 4
GO:0010283 pinoresinol reductase activity 30
GO:0016629 12-oxophytodienoate reductase activity 96
GO:0016630 protochlorophyllide reductase activity 12
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity 4
GO:0032440 2-alkenal reductase [NAD(P)+] activity 22
GO:0033729 anthocyanidin reductase activity 4
GO:0033730 arogenate dehydrogenase (NADP+) activity 34
GO:0035671 enone reductase activity 70
GO:0035798 2-alkenal reductase (NADP+) activity 6
GO:0047526 2'-hydroxyisoflavone reductase activity 12
GO:0050213 progesterone 5-alpha-reductase activity 2
GO:0050613 delta14-sterol reductase activity 4
GO:0102389 polyprenol reductase activity 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001