Functional clusters
Information
- Type Gene Ontology
- Description 12-oxophytodienoate reductase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group0 | 3 | CH_ach_231 | 2 | 2 | 0.000543213 |
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_243 | 2 | 2 | 0.000198013 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 3 | CH_amhyb_22 | 4 | 4 | 0.0000000000268422 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 3 | CH_arhy_608 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_420 | 2 | 2 | 0.0000859476 |
| Brassica carinata | ChrB05 | 3 | CH_bca_191 | 3 | 3 | 0.0000000383844 |
| Capsicum annuum | PGAv.1.6.scaffold509 | 3 | CH_can_421 | 2 | 2 | 0.000495663 |
| Cicer arietinum L. | Ca_LG8_v3 | 3 | CH_car_125 | 3 | 42 | 0.000104156 |
| Coffea canephora | chr10 | 3 | CH_ccan_28 | 5 | 74 | 0.0000000000510339 |
| Carica papaya | supercontig_21 | 3 | CH_cpa_228 | 2 | 2 | 0.000285198 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2389 | 3 | CH_cqu_62 | 5 | 10 | 0.00000000000439861 |
| Daucus carota | DCARv2_Chr3 | 3 | CH_dca_106 | 3 | 3 | 0.0000000610156 |
| Davidia involucrata | GWHABJS00000002 | 3 | CH_din_367 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019168381.1 | 3 | CH_dzi_105 | 3 | 3 | 0.000000112784 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 3 | CH_eca_336 | 3 | 34 | 0.000180423 |
| Fragaria x ananassa | Fvb1-2 | 3 | CH_fan_254 | 3 | 4 | 0.00000534033 |
| Gossypium hirsutum | D05 | 3 | CH_ghi_226 | 3 | 3 | 0.000000128337 |
| Glycine max | Gm13 | 3 | CH_gma_474 | 2 | 2 | 0.000569336 |
| Glycine max | Gm17 | 3 | CH_gma_475 | 2 | 2 | 0.000569336 |
| Helianthus annuus | HanXRQChr03 | 3 | CH_han_53 | 6 | 7 | 5.26e-16 |
| Lotus japonicus | chr4 | 3 | CH_lja_355 | 2 | 2 | 0.000715077 |
| Lonicera japonica | GWHAAZE00000004 | 3 | CH_lonja_61 | 6 | 9 | 1.01928e-17 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_79 | 4 | 5 | 0.0000000000101855 |
| Magnolia biondii | Chr03 | 3 | CH_mbi_62 | 5 | 10 | 0.000000000000220768 |
| Malus domestica | Chr15 | 3 | CH_mdo_7 | 10 | 25 | 1.12714e-26 |
| Manihot esculenta | Chromosome18 | 3 | CH_mes_106 | 4 | 6 | 0.0000000000512285 |
| Medicago truncatula | chr5 | 3 | CH_mtr_34 | 7 | 12 | 1.08012e-20 |
| Oryza sativa ssp. japonica | chr06 | 3 | CH_osa_52 | 5 | 13 | 0.0000000000094541 |
| Petunia axillaris | Peaxi162Scf00688 | 3 | CH_pax_63 | 3 | 3 | 0.0000000297005 |
| Punica granatum | NC_045130.1 | 3 | CH_pgr_353 | 2 | 2 | 0.000450214 |
| Prunus persica | Pp01 | 3 | CH_ppe_16 | 8 | 9 | 1.64089e-24 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_7 | 6 | 6 | 2.43381e-19 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_437 | 3 | 9 | 0.0000434555 |
| Populus trichocarpa | Chr13 | 3 | CH_ptr_59 | 5 | 5 | 0.00000000000000468856 |
| Phaseolus vulgaris | Chr02 | 3 | CH_pvu_124 | 3 | 3 | 0.000000161953 |
| Quercus lobata | 9 | 3 | CH_qlo_94 | 9 | 75 | 1.96624e-18 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_194 | 4 | 6 | 0.00000000203792 |
| Rhododendron simsii | chr11 | 3 | CH_rsi_136 | 4 | 7 | 0.000000000423168 |
| Salvia bowleyana | GWHASIU00000005 | 3 | CH_sbo_166 | 3 | 3 | 0.0000000310517 |
| Sechium edule | LG11 | 3 | CH_sed_78 | 3 | 3 | 0.0000000763478 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_248 | 6 | 8 | 0.000000000000156492 |
| Solanum tuberosum | ST4.03ch11 | 3 | CH_stu_139 | 4 | 11 | 0.000000000665977 |
| Tarenaya hassleriana | NW_010964923.1 | 3 | CH_tha_158 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_6 | 7 | 11 | 1.76042e-19 |
| Tripterygium wilfordii | NC_052249.1 | 3 | CH_twi_19 | 5 | 5 | 0.00000000000000152587 |
| Vigna mungo | CM024074.1 | 3 | CH_vmu_306 | 2 | 2 | 0.000646141 |
| Vigna mungo | CM024074.1 | 3 | CH_vmu_82 | 3 | 3 | 0.0000000626267 |
| Vitis vinifera | chr18 | 3 | CH_vvi_37 | 6 | 7 | 2.80789e-18 |
| Actinidia chinensis | Lachesis_group0 | 4 | CH_ach_231 | 2 | 2 | 0.000543213 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_243 | 2 | 2 | 0.000198013 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 4 | CH_amhyb_22 | 4 | 4 | 0.0000000000268422 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 4 | CH_arhy_608 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_420 | 2 | 2 | 0.0000859476 |
| Brassica carinata | ChrB05 | 4 | CH_bca_191 | 3 | 3 | 0.0000000383844 |
| Capsicum annuum | PGAv.1.6.scaffold509 | 4 | CH_can_421 | 2 | 2 | 0.000495663 |
| Cicer arietinum L. | Ca_LG8_v3 | 4 | CH_car_125 | 3 | 42 | 0.000104156 |
| Coffea canephora | chr10 | 4 | CH_ccan_28 | 5 | 74 | 0.0000000000510339 |
| Carica papaya | supercontig_21 | 4 | CH_cpa_228 | 2 | 2 | 0.000285198 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2389 | 4 | CH_cqu_62 | 5 | 10 | 0.00000000000439861 |
| Daucus carota | DCARv2_Chr3 | 4 | CH_dca_106 | 3 | 3 | 0.0000000610156 |
| Davidia involucrata | GWHABJS00000002 | 4 | CH_din_367 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019168381.1 | 4 | CH_dzi_105 | 3 | 3 | 0.000000112784 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 4 | CH_eca_336 | 3 | 34 | 0.000180423 |
| Fragaria x ananassa | Fvb1-2 | 4 | CH_fan_254 | 3 | 4 | 0.00000534033 |
| Gossypium hirsutum | D05 | 4 | CH_ghi_226 | 3 | 3 | 0.000000128337 |
| Glycine max | Gm13 | 4 | CH_gma_474 | 2 | 2 | 0.000569336 |
| Glycine max | Gm17 | 4 | CH_gma_475 | 2 | 2 | 0.000569336 |
| Helianthus annuus | HanXRQChr03 | 4 | CH_han_53 | 6 | 7 | 5.26e-16 |
| Lotus japonicus | chr4 | 4 | CH_lja_355 | 2 | 2 | 0.000715077 |
| Lonicera japonica | GWHAAZE00000004 | 4 | CH_lonja_61 | 6 | 9 | 1.01928e-17 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_79 | 4 | 5 | 0.0000000000101855 |
| Magnolia biondii | Chr03 | 4 | CH_mbi_62 | 5 | 10 | 0.000000000000220768 |
| Malus domestica | Chr15 | 4 | CH_mdo_7 | 10 | 25 | 1.12714e-26 |
| Manihot esculenta | Chromosome18 | 4 | CH_mes_106 | 4 | 6 | 0.0000000000512285 |
| Medicago truncatula | chr5 | 4 | CH_mtr_34 | 7 | 12 | 1.08012e-20 |
| Oryza sativa ssp. japonica | chr06 | 4 | CH_osa_52 | 5 | 13 | 0.0000000000094541 |
| Petunia axillaris | Peaxi162Scf00688 | 4 | CH_pax_63 | 3 | 3 | 0.0000000297005 |
| Punica granatum | NC_045130.1 | 4 | CH_pgr_353 | 2 | 2 | 0.000450214 |
| Prunus persica | Pp01 | 4 | CH_ppe_16 | 8 | 9 | 1.64089e-24 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_7 | 6 | 6 | 2.43381e-19 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_437 | 3 | 9 | 0.0000434555 |
| Populus trichocarpa | Chr13 | 4 | CH_ptr_59 | 5 | 5 | 0.00000000000000468856 |
| Phaseolus vulgaris | Chr02 | 4 | CH_pvu_124 | 3 | 3 | 0.000000161953 |
| Quercus lobata | 9 | 4 | CH_qlo_94 | 9 | 75 | 1.96624e-18 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_194 | 4 | 6 | 0.00000000203792 |
| Rhododendron simsii | chr11 | 4 | CH_rsi_136 | 4 | 7 | 0.000000000423168 |
| Salvia bowleyana | GWHASIU00000005 | 4 | CH_sbo_166 | 3 | 3 | 0.0000000310517 |
| Sechium edule | LG11 | 4 | CH_sed_78 | 3 | 3 | 0.0000000763478 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_248 | 6 | 8 | 0.000000000000156492 |
| Solanum tuberosum | ST4.03ch11 | 4 | CH_stu_139 | 4 | 11 | 0.000000000665977 |
| Tarenaya hassleriana | NW_010964923.1 | 4 | CH_tha_158 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_6 | 7 | 11 | 1.76042e-19 |
| Tripterygium wilfordii | NC_052249.1 | 4 | CH_twi_19 | 5 | 5 | 0.00000000000000152587 |
| Vigna mungo | CM024074.1 | 4 | CH_vmu_306 | 2 | 2 | 0.000646141 |
| Vigna mungo | CM024074.1 | 4 | CH_vmu_82 | 3 | 3 | 0.0000000626267 |
| Vitis vinifera | chr18 | 4 | CH_vvi_37 | 6 | 7 | 2.80789e-18 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |