Functional clusters
Information
- Type Gene Ontology
- Description 3'-5' exonuclease activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group2 | 3 | CH_ach_222 | 4 | 23 | 0.000516875 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 3 | CH_amhyb_80 | 3 | 3 | 0.0000163681 |
| Aquilegia oxysepala | CHR02 | 3 | CH_aox_4 | 9 | 13 | 1.22462e-18 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 3 | CH_arhy_236 | 5 | 10 | 0.000000013518 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_106 | 5 | 8 | 0.0000000045468 |
| Brassica carinata | ChrC03 | 3 | CH_bca_812 | 3 | 4 | 0.00044299 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 3 | CH_bvu_244 | 3 | 5 | 0.000509034 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 3 | CH_can_80 | 6 | 8 | 0.0000000000108754 |
| Cicer arietinum L. | Ca_LG3_v3 | 3 | CH_car_174 | 3 | 4 | 0.000358702 |
| Carpinus fangiana | Cfa06 | 3 | CH_cfa_231 | 3 | 3 | 0.0000786313 |
| Cardamine hirsuta | Chr3 | 3 | CH_chi_346 | 3 | 4 | 0.000434662 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 3 | CH_eca_51 | 5 | 6 | 0.000000000136644 |
| Glycine max | Gm18 | 3 | CH_gma_308 | 3 | 3 | 0.0000739492 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_258 | 4 | 4 | 0.000000140989 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 3 | CH_lsa_72 | 6 | 9 | 0.00000000000304258 |
| Nelumbo nucifera | chr4 | 3 | CH_nnu_82 | 4 | 4 | 0.0000000455179 |
| Petunia axillaris | Peaxi162Scf00357 | 3 | CH_pax_70 | 4 | 4 | 0.0000000690087 |
| Punica granatum | NC_045133.1 | 3 | CH_pgr_242 | 3 | 3 | 0.0000603033 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_491 | 3 | 3 | 0.00011942 |
| Papaver somniferum | NW_020624377.1 | 3 | CH_pso_633 | 3 | 4 | 0.000477286 |
| Rhododendron simsii | chr04 | 3 | CH_rsi_521 | 3 | 5 | 0.000825595 |
| Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_161 | 4 | 5 | 0.0000000247846 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_576 | 7 | 75 | 0.0000000638114 |
| Trochodendron aralioides | group7 | 3 | CH_tar_425 | 3 | 4 | 0.000535805 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_74 | 3 | CH_tpr_48 | 5 | 7 | 0.00000000143654 |
| Actinidia chinensis | Lachesis_group2 | 4 | CH_ach_222 | 4 | 23 | 0.000516875 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 4 | CH_amhyb_80 | 3 | 3 | 0.0000163681 |
| Aquilegia oxysepala | CHR02 | 4 | CH_aox_4 | 9 | 13 | 1.22462e-18 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 4 | CH_arhy_236 | 5 | 10 | 0.000000013518 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_106 | 5 | 8 | 0.0000000045468 |
| Brassica carinata | ChrC03 | 4 | CH_bca_812 | 3 | 4 | 0.00044299 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 4 | CH_bvu_244 | 3 | 5 | 0.000509034 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 4 | CH_can_80 | 6 | 8 | 0.0000000000108754 |
| Cicer arietinum L. | Ca_LG3_v3 | 4 | CH_car_174 | 3 | 4 | 0.000358702 |
| Carpinus fangiana | Cfa06 | 4 | CH_cfa_231 | 3 | 3 | 0.0000786313 |
| Cardamine hirsuta | Chr3 | 4 | CH_chi_346 | 3 | 4 | 0.000434662 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 4 | CH_eca_51 | 5 | 6 | 0.000000000136644 |
| Glycine max | Gm18 | 4 | CH_gma_308 | 3 | 3 | 0.0000739492 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_258 | 4 | 4 | 0.000000140989 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 4 | CH_lsa_72 | 6 | 9 | 0.00000000000304258 |
| Nelumbo nucifera | chr4 | 4 | CH_nnu_82 | 4 | 4 | 0.0000000455179 |
| Petunia axillaris | Peaxi162Scf00357 | 4 | CH_pax_70 | 4 | 4 | 0.0000000690087 |
| Punica granatum | NC_045133.1 | 4 | CH_pgr_242 | 3 | 3 | 0.0000603033 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_491 | 3 | 3 | 0.00011942 |
| Papaver somniferum | NW_020624377.1 | 4 | CH_pso_633 | 3 | 4 | 0.000477286 |
| Rhododendron simsii | chr04 | 4 | CH_rsi_521 | 3 | 5 | 0.000825595 |
| Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_161 | 4 | 5 | 0.0000000247846 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_576 | 7 | 75 | 0.0000000638114 |
| Trochodendron aralioides | group7 | 4 | CH_tar_425 | 3 | 4 | 0.000535805 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_74 | 4 | CH_tpr_48 | 5 | 7 | 0.00000000143654 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000175 | 3'-5'-exoribonuclease activity | 2 |
| GO:0004535 | poly(A)-specific ribonuclease activity | 80 |
| GO:0008296 | 3'-5'-exodeoxyribonuclease activity | 2 |
| GO:0008310 | single-stranded DNA 3'-5' exodeoxyribonuclease activity | 8 |
| GO:0044748 | 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |