Functional clusters

Information

  • Type Gene Ontology
  • Description prenyltransferase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC04 3 CH_bca_603 3 3 0.0000948745
Corchorus olitorius AWUE01017496.1 3 CH_col_64 3 6 0.000143063
Chenopodium quinoa C_Quinoa_Scaffold_3333 3 CH_cqu_406 3 3 0.000218306
Erigeron canadensis Conyza_canadensis_scaffold:6 3 CH_eca_46 7 32 0.0000000000684806
Glycine max Gm10 3 CH_gma_311 3 3 0.0000858152
Helianthus annuus HanXRQChr07 3 CH_han_507 3 4 0.000102798
Manihot esculenta Chromosome14 3 CH_mes_153 4 4 0.0000000316804
Medicago truncatula chr6 3 CH_mtr_163 5 6 0.0000000000960486
Oryza sativa ssp. japonica chr02 3 CH_osa_202 4 8 0.00000281831
Petunia axillaris Peaxi162Scf00540 3 CH_pax_178 3 3 0.0000405115
Papaver somniferum NC_039365.1 3 CH_pso_448 4 13 0.0000622355
Papaver somniferum NW_020622381.1 3 CH_pso_481 3 3 0.0000894455
Sechium edule LG02 3 CH_sed_100 4 5 0.00000040168
Selaginella moellendorffii scaffold_119 3 CH_smo_99 3 3 0.0000428427
Theobroma cacao Chromosome_2 3 CH_tca_138 4 4 0.0000000617147
Brassica carinata ChrC04 4 CH_bca_603 3 3 0.0000948745
Corchorus olitorius AWUE01017496.1 4 CH_col_64 3 6 0.000143063
Chenopodium quinoa C_Quinoa_Scaffold_3333 4 CH_cqu_406 3 3 0.000218306
Erigeron canadensis Conyza_canadensis_scaffold:6 4 CH_eca_46 7 32 0.0000000000684806
Glycine max Gm10 4 CH_gma_311 3 3 0.0000858152
Helianthus annuus HanXRQChr07 4 CH_han_507 3 4 0.000102798
Manihot esculenta Chromosome14 4 CH_mes_153 4 4 0.0000000316804
Medicago truncatula chr6 4 CH_mtr_163 5 6 0.0000000000960486
Oryza sativa ssp. japonica chr02 4 CH_osa_202 4 8 0.00000281831
Petunia axillaris Peaxi162Scf00540 4 CH_pax_178 3 3 0.0000405115
Papaver somniferum NC_039365.1 4 CH_pso_448 4 13 0.0000622355
Papaver somniferum NW_020622381.1 4 CH_pso_481 3 3 0.0000894455
Sechium edule LG02 4 CH_sed_100 4 5 0.00000040168
Selaginella moellendorffii scaffold_119 4 CH_smo_99 3 3 0.0000428427
Theobroma cacao Chromosome_2 4 CH_tca_138 4 4 0.0000000617147

Available child term results

Ontology identifier Description Number of clusters
GO:0002094 polyprenyltransferase activity 4
GO:0004161 dimethylallyltranstransferase activity 4
GO:0004310 farnesyl-diphosphate farnesyltransferase activity 22
GO:0004311 farnesyltranstransferase activity 16
GO:0004660 protein farnesyltransferase activity 2
GO:0004662 CAAX-protein geranylgeranyltransferase activity 6
GO:0004663 Rab geranylgeranyltransferase activity 4
GO:0008318 protein prenyltransferase activity 8
GO:0008495 protoheme IX farnesyltransferase activity 4
GO:0010355 homogentisate farnesyltransferase activity 4
GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity 6
GO:0044687 geranylfarnesyl diphosphate synthase activity 14
GO:0045547 dehydrodolichyl diphosphate synthase activity 2
GO:0046408 chlorophyll synthetase activity 6
GO:0047293 4-hydroxybenzoate nonaprenyltransferase activity 12
GO:0050267 rubber cis-polyprenylcistransferase activity 20
GO:0050347 trans-octaprenyltranstransferase activity 10
GO:0051996 squalene synthase activity 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001