Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.tetrapyrrol biosynthesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC04 1 CH_bca_665 3 4 0.0000937784
Brassica napus A09 1 CH_bna_523 3 4 0.000163208
Brassica oleracea C9 1 CH_bol_203 3 3 0.0000146462
Brassica rapa A09 1 CH_bra_175 3 3 0.00001974
Brassica carinata ChrC04 2 CH_bca_665 3 4 0.0000937784
Brassica oleracea C9 2 CH_bol_203 3 3 0.0000146462
Brassica rapa A09 2 CH_bra_175 3 3 0.00001974

Available child term results

Ontology identifier Description Number of clusters
7.12.1.1 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamyl-tRNA synthetase (GluRS) 6
7.12.1.2 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamyl-tRNA reductase 9
7.12.1.3.1 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamyl-tRNA reductase regulation.regulatory factor (FLU) 4
7.12.1.4 Coenzyme metabolism.tetrapyrrol biosynthesis.5-aminolevulinic acid formation.glutamate-1-semialdehyde-2,1-aminomutase 6
7.12.2.1 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase 2
7.12.2.2 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase 4
7.12.2.3 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.uroporphyrinogen III synthase 6
7.12.3.1 Coenzyme metabolism.tetrapyrrol biosynthesis.siroheme biosynthesis.uroporphyrinogen III methyltransferase 4
7.12.3.2 Coenzyme metabolism.tetrapyrrol biosynthesis.siroheme biosynthesis.sirohydrochlorin ferrochelatase 13
7.12.4.1 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase 8
7.12.4.2.1 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.oxygen-dependent coproporphyrinogen III oxidase (HemF) 4
7.12.4.3 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.protoporphyrinogen IX oxidase 4
7.12.5.1 Coenzyme metabolism.tetrapyrrol biosynthesis.heme biosynthesis and modification.ferrochelatase 14
7.12.5.2 Coenzyme metabolism.tetrapyrrol biosynthesis.heme biosynthesis and modification.heme oxygenase 10
7.12.5.3 Coenzyme metabolism.tetrapyrrol biosynthesis.heme biosynthesis and modification.phytochromobilin synthase 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001