Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 1 CH_aar_7 8 11 1.35392e-21
Acer truncatum chr7 1 CH_acertr_24 5 6 0.000000000000140053
Arabidopsis lyrata scaffold_5 1 CH_aly_10 8 13 4.90102e-18
Arabidopsis lyrata scaffold_4 1 CH_aly_258 3 4 0.0000764126
Aquilegia oxysepala CHR07 1 CH_aox_2 12 28 3.1568e-28
Aquilegia oxysepala CHR04 1 CH_aox_51 4 5 0.0000000299782
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_108 6 21 0.00000000000113504
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_304 3 3 0.0000015327
Arabidopsis thaliana Chr3 1 CH_ath_18 8 54 6.49206e-16
Amborella trichopoda AmTr_v1.0_scaffold00129 1 CH_atr_31 5 7 0.00000000000013173
Brassica carinata ChrC04 1 CH_bca_272 4 9 0.000000217193
Brassica napus A10 1 CH_bna_518 3 7 0.000128886
Brassica rapa A10 1 CH_bra_200 3 6 0.0000450845
Camellia sinensis var. sinensis Chr11 1 CH_camsi_360 3 3 0.00000114808
Capsicum annuum PGAv.1.6.scaffold170 1 CH_can_119 4 7 0.0000000591968
Capsicum annuum PGAv.1.6.scaffold1569 1 CH_can_49 5 5 0.000000000000699478
Corylus avellana 11 1 CH_cav_299 4 67 0.000129021
Corylus avellana 6 1 CH_cav_58 4 5 0.000000000851718
Coffea canephora chr1 1 CH_ccan_255 2 2 0.000153321
Citrus clementina scaffold_1 1 CH_ccl_239 3 4 0.0000146914
Citrus clementina scaffold_3 1 CH_ccl_97 5 15 0.0000000020351
Carpinus fangiana Cfa01 1 CH_cfa_107 3 3 0.000000172079
Cardamine hirsuta Chr5 1 CH_chi_162 4 12 0.00000236716
Cucumis melo chr11 1 CH_cme_295 2 2 0.000667111
Carica papaya supercontig_67 1 CH_cpa_382 2 2 0.000950661
Capsella rubella scaffold_5 1 CH_cru_10 9 14 2.31551e-20
Capsella rubella scaffold_4 1 CH_cru_228 3 3 0.0000293018
Capsella rubella scaffold_5 1 CH_cru_434 4 31 0.000858419
Daucus carota DCARv2_Chr3 1 CH_dca_17 6 7 8.31843e-16
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_159 3 3 0.000000362441
Erythranthe guttata scaffold_14 1 CH_egut_190 5 42 0.000000531964
Erythranthe guttata scaffold_4 1 CH_egut_62 6 19 0.00000000000623058
Fragaria x ananassa Fvb1-2 1 CH_fan_127 4 8 0.0000000616442
Fragaria x ananassa Fvb1-2 1 CH_fan_138 4 9 0.000000110934
Fragaria x ananassa Fvb1-4 1 CH_fan_362 3 6 0.0000614239
Fragaria x ananassa Fvb1-3 1 CH_fan_363 3 6 0.0000614239
Fragaria vesca Fvb1 1 CH_fve_18 7 11 6.98613e-18
Gossypium raimondii Chr09 1 CH_gra_330 3 19 0.000233471
Helianthus annuus HanXRQChr13 1 CH_han_10 10 12 1.76306e-28
Lupinus albus Lalb_Chr23 1 CH_lal_157 3 6 0.0000181685
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_257 3 5 0.0000033281
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_320 3 10 0.000039909
Malus domestica Chr11 1 CH_mdo_168 4 6 0.00000000950718
Malus domestica Chr09 1 CH_mdo_393 3 6 0.000041773
Malus domestica Chr02 1 CH_mdo_83 5 8 0.0000000000100929
Manihot esculenta Chromosome04 1 CH_mes_98 4 4 0.00000000022543
Medicago truncatula chr2 1 CH_mtr_111 6 12 0.000000000000245296
Medicago truncatula chr1 1 CH_mtr_407 3 3 0.00000448449
Medicago truncatula chr3 1 CH_mtr_92 6 10 0.0000000000000557847
Nelumbo nucifera chr8 1 CH_nnu_100 3 3 0.0000000998094
Oryza sativa ssp. japonica chr09 1 CH_osa_46 4 4 0.000000000055684
Punica granatum NC_045130.1 1 CH_pgr_133 3 3 0.00000070945
Prunus persica Pp07 1 CH_ppe_162 4 7 0.0000000215593
Prunus persica Pp06 1 CH_ppe_285 3 5 0.0000183532
Pisum sativum chr1LG6 1 CH_psa_175 3 6 0.00000979117
Phaseolus vulgaris Chr10 1 CH_pvu_199 3 5 0.00000283334
Quercus lobata 5 1 CH_qlo_213 5 9 0.0000000000201468
Quercus lobata 1 1 CH_qlo_517 3 3 0.00000181928
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_134 5 9 0.0000000000277286
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_34 8 12 1.88497e-21
Rhododendron simsii chr13 1 CH_rsi_236 3 3 0.00000137423
Rhododendron simsii chr04 1 CH_rsi_237 3 3 0.00000137423
Striga asiatica scaffold2 1 CH_sas_107 2 2 0.000375223
Theobroma cacao Chromosome_6 1 CH_tca_235 3 5 0.00000965094
Tarenaya hassleriana NW_010965304.1 1 CH_tha_203 2 2 0.00069847
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_148 3 3 0.0000024583
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_147 3 3 0.00000213722
Vitis vinifera chr9 1 CH_vvi_425 2 2 0.00076063
Zea mays 4 1 CH_zma_271 2 2 0.000766969
Zea mays 7 1 CH_zma_272 2 2 0.000766969
Aethionema arabicum LG-4 2 CH_aar_7 8 11 1.35392e-21
Acer truncatum chr7 2 CH_acertr_24 5 6 0.000000000000140053
Arabidopsis lyrata scaffold_5 2 CH_aly_10 8 13 4.90102e-18
Arabidopsis lyrata scaffold_4 2 CH_aly_258 3 4 0.0000764126
Aquilegia oxysepala CHR07 2 CH_aox_2 12 28 3.1568e-28
Aquilegia oxysepala CHR04 2 CH_aox_51 4 5 0.0000000299782
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_108 6 21 0.00000000000113504
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_304 3 3 0.0000015327
Arabidopsis thaliana Chr3 2 CH_ath_18 8 54 6.49206e-16
Amborella trichopoda AmTr_v1.0_scaffold00129 2 CH_atr_31 5 7 0.00000000000013173
Brassica carinata ChrC04 2 CH_bca_272 4 9 0.000000217193
Brassica rapa A10 2 CH_bra_200 3 6 0.0000450845
Camellia sinensis var. sinensis Chr11 2 CH_camsi_360 3 3 0.00000114808
Capsicum annuum PGAv.1.6.scaffold170 2 CH_can_119 4 7 0.0000000591968
Capsicum annuum PGAv.1.6.scaffold1569 2 CH_can_49 5 5 0.000000000000699478
Corylus avellana 11 2 CH_cav_299 4 67 0.000129021
Corylus avellana 6 2 CH_cav_58 4 5 0.000000000851718
Coffea canephora chr1 2 CH_ccan_255 2 2 0.000153321
Citrus clementina scaffold_1 2 CH_ccl_239 3 4 0.0000146914
Citrus clementina scaffold_3 2 CH_ccl_97 5 15 0.0000000020351
Carpinus fangiana Cfa01 2 CH_cfa_107 3 3 0.000000172079
Cardamine hirsuta Chr5 2 CH_chi_162 4 12 0.00000236716
Cucumis melo chr11 2 CH_cme_295 2 2 0.000667111
Carica papaya supercontig_67 2 CH_cpa_382 2 2 0.000950661
Capsella rubella scaffold_5 2 CH_cru_10 9 14 2.31551e-20
Capsella rubella scaffold_4 2 CH_cru_228 3 3 0.0000293018
Capsella rubella scaffold_5 2 CH_cru_434 4 31 0.000858419
Daucus carota DCARv2_Chr3 2 CH_dca_17 6 7 8.31843e-16
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_159 3 3 0.000000362441
Eucalyptus grandis Chr05 2 CH_egr_468 4 11 0.000000198329
Eucalyptus grandis Chr03 2 CH_egr_583 3 4 0.0000074794
Eucalyptus grandis Chr05 2 CH_egr_728 3 8 0.000104598
Erythranthe guttata scaffold_14 2 CH_egut_190 5 42 0.000000531964
Erythranthe guttata scaffold_4 2 CH_egut_62 6 19 0.00000000000623058
Fragaria x ananassa Fvb1-2 2 CH_fan_127 4 8 0.0000000616442
Fragaria x ananassa Fvb1-2 2 CH_fan_138 4 9 0.000000110934
Fragaria x ananassa Fvb1-4 2 CH_fan_362 3 6 0.0000614239
Fragaria x ananassa Fvb1-3 2 CH_fan_363 3 6 0.0000614239
Fragaria vesca Fvb1 2 CH_fve_18 7 11 6.98613e-18
Gossypium hirsutum A05 2 CH_ghi_800 3 20 0.000681088
Gossypium hirsutum D05 2 CH_ghi_801 3 20 0.000681088
Gossypium raimondii Chr09 2 CH_gra_330 3 19 0.000233471
Helianthus annuus HanXRQChr13 2 CH_han_10 10 12 1.76306e-28
Lupinus albus Lalb_Chr23 2 CH_lal_157 3 6 0.0000181685
Lotus japonicus chr6 2 CH_lja_188 3 3 0.00000219371
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_257 3 5 0.0000033281
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_320 3 10 0.000039909
Malus domestica Chr11 2 CH_mdo_168 4 6 0.00000000950718
Malus domestica Chr09 2 CH_mdo_393 3 6 0.000041773
Malus domestica Chr02 2 CH_mdo_83 5 8 0.0000000000100929
Manihot esculenta Chromosome04 2 CH_mes_98 4 4 0.00000000022543
Nelumbo nucifera chr8 2 CH_nnu_100 3 3 0.0000000998094
Oryza sativa ssp. japonica chr09 2 CH_osa_46 4 4 0.000000000055684
Punica granatum NC_045130.1 2 CH_pgr_133 3 3 0.00000070945
Prunus persica Pp07 2 CH_ppe_162 4 7 0.0000000215593
Prunus persica Pp06 2 CH_ppe_285 3 5 0.0000183532
Pisum sativum chr1LG6 2 CH_psa_175 3 6 0.00000979117
Phaseolus vulgaris Chr10 2 CH_pvu_199 3 5 0.00000283334
Quercus lobata 5 2 CH_qlo_213 5 9 0.0000000000201468
Quercus lobata 1 2 CH_qlo_517 3 3 0.00000181928
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_134 5 9 0.0000000000277286
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_34 8 12 1.88497e-21
Rhododendron simsii chr13 2 CH_rsi_236 3 3 0.00000137423
Rhododendron simsii chr04 2 CH_rsi_237 3 3 0.00000137423
Striga asiatica scaffold2 2 CH_sas_107 2 2 0.000375223
Theobroma cacao Chromosome_6 2 CH_tca_235 3 5 0.00000965094
Tarenaya hassleriana NW_010965304.1 2 CH_tha_203 2 2 0.00069847
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_148 3 3 0.0000024583
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_147 3 3 0.00000213722
Vitis vinifera chr9 2 CH_vvi_425 2 2 0.00076063
Zea mays 4 2 CH_zma_271 2 2 0.000766969
Zea mays 7 2 CH_zma_272 2 2 0.000766969

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001