Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (USP39)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_101 3 4 0.000000029819
Arabidopsis thaliana Chr4 1 CH_ath_174 3 22 0.0000018955
Camellia sinensis var. sinensis Chr8 1 CH_camsi_613 2 3 0.000137561
Ceratophyllum demersum 5 1 CH_cde_222 2 2 0.000473878
Citrullus lanatus CG_Chr01 1 CH_cla_152 2 3 0.000266123
Carica papaya supercontig_109 1 CH_cpa_265 2 3 0.000285185
Davidia involucrata GWHABJS00000020 1 CH_din_250 2 2 0.0000500125
Helianthus annuus HanXRQChr03 1 CH_han_104 4 6 0.0000000000129833
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_576 2 2 0.000119596
Sequoiadendron giganteum chr8 1 CH_sgi_1018 2 3 0.000146142
Acer truncatum chr1 2 CH_acertr_101 3 4 0.000000029819
Arabidopsis thaliana Chr4 2 CH_ath_174 3 22 0.0000018955
Camellia sinensis var. sinensis Chr8 2 CH_camsi_613 2 3 0.000137561
Ceratophyllum demersum 5 2 CH_cde_222 2 2 0.000473878
Citrullus lanatus CG_Chr01 2 CH_cla_152 2 3 0.000266123
Carica papaya supercontig_109 2 CH_cpa_265 2 3 0.000285185
Davidia involucrata GWHABJS00000020 2 CH_din_250 2 2 0.0000500125
Helianthus annuus HanXRQChr03 2 CH_han_104 4 6 0.0000000000129833
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_576 2 2 0.000119596
Sequoiadendron giganteum chr8 2 CH_sgi_1018 2 3 0.000146142

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001