Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p08020 Brassica napus
A08p33480 Brassica napus
A09p63310 Brassica napus
Aa31LG1G3310 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis
Actinidia00218 Actinidia chinensis
Actinidia39055 Actinidia chinensis
Ah.04g149450 Amaranthus hybridus
Ah.13g066130 Amaranthus hybridus
Ah.13g077920 Amaranthus hybridus
AL1G22490 Arabidopsis lyrata
Aqoxy6G00151 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T74HR0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VW9U9R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea
AT1G11400 Arabidopsis thaliana
ATR0684G092 Amborella trichopoda
Atru.chr6.1045 Acer truncatum
Atru.chr6.1081 Acer truncatum
AUR62018552 Chenopodium quinoa
AUR62020867 Chenopodium quinoa
BcaB03g13258 Brassica carinata
BcaB03g13259 Brassica carinata
BcaC05g25015 Brassica carinata
BcaC07g38663 Brassica carinata
BolC5t29704H Brassica oleracea
BolC8t49096H Brassica oleracea
BraA06t24001Z Brassica rapa
BraA08t35264Z Brassica rapa
BraA09t41682Z Brassica rapa
C05p09620 Brassica napus
C08p14470 Brassica napus
CAN.G1352.25 Capsicum annuum
CANSAT11G1940 Cannabis sativa
CARHR011640 Cardamine hirsuta
Carub.0001s1103 Capsella rubella
Ca_00089_v3 Cicer arietinum L.
Ca_29928_v3 Cicer arietinum L.
CBR_g22015 Chara braunii
Cc02_g22290 Coffea canephora
CDE02G4357 Ceratophyllum demersum
CDE09G0560 Ceratophyllum demersum
Cfa005544 Carpinus fangiana
Ciclev10002345m.g Citrus clementina
CiPaw.05G042800 Carya illinoinensis
CiPaw.06G148900 Carya illinoinensis
ClCG09G016220 Citrullus lanatus
COL.COLO4_17895 Corchorus olitorius
Cpa.g.sc2.26 Carica papaya
Cre06.g279250 Chlamydomonas reinhardtii
CsaV3_5G024750 Cucumis sativus L.
CsaV3_7G007080 Cucumis sativus L.
CSS0012117 Camellia sinensis var. sinensis
CSS0018254 Camellia sinensis var. sinensis
CSS0024882 Camellia sinensis var. sinensis
CSS0037217 Camellia sinensis var. sinensis
DCAR_005625 Daucus carota
Dinv19352 Davidia involucrata
Dinv24262 Davidia involucrata
Duzib132G0636 Durio zibethinus
Duzib248G0546 Durio zibethinus
ECA240G2283 Erigeron canadensis
EL10Ac3g07450 Beta vulgaris
Eucgr.I02711 Eucalyptus grandis
FAN04G2475 Fragaria x ananassa
FAN08G0327 Fragaria x ananassa
FAN13G3307 Fragaria x ananassa
FAN18G4597 Fragaria x ananassa
FvH4_5g30080 Fragaria vesca
Glyma.05G170200 Glycine max
Glyma.08G128300 Glycine max
Glyma.14G118550 Glycine max
Glyma.14G170300 Glycine max
Gohir.A01G177000 Gossypium hirsutum
Gohir.A03G210900 Gossypium hirsutum
Gohir.D01G167800 Gossypium hirsutum
Gohir.D02G232500 Gossypium hirsutum
Gorai.002G208500 Gossypium raimondii
Gorai.005G260300 Gossypium raimondii
GSVIVG01013911001 Vitis vinifera
GSVIVG01023017001 Vitis vinifera
HanXRQChr03g0066881 Helianthus annuus
Haze_01626 Corylus avellana
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla
HPP92_009361 Vanilla planifolia
HPP92_019221 Vanilla planifolia
Hund19012 Selenicereus undatus
Lalb_Chr07g0185691 Lupinus albus
Lalb_Chr12g0204381 Lupinus albus
Lj5A248T74 Lonicera japonica
Lj5C249T1 Lonicera japonica
Lj6g0003329 Lotus japonicus
Lj9C308T7 Lonicera japonica
Lsat_1_v5_gn_2_102640 Lactuca sativa
Lsat_1_v5_gn_7_77960 Lactuca sativa
Lsat_1_v5_gn_8_72721 Lactuca sativa
Lsat_1_v5_gn_9_116381 Lactuca sativa
Manes.07G013800 Manihot esculenta
Manes.10G132000 Manihot esculenta
Mapoly0065s0027 Marchantia polymorpha
MBI03_g11127_MAGBIO Magnolia biondii
MBI03_g11149_MAGBIO Magnolia biondii
MD08G1225100 Malus domestica
MD15G1418700 Malus domestica
Medtr2g007770 Medicago truncatula
MELO3C018586.2 Cucumis melo
Migut.B00668 Erythranthe guttata
MSTRG.16532 Avicennia marina
MSTRG.27841 Avicennia marina
Nitab4.5_0005539g0010 Nicotiana tabacum
Nitab4.5_0010140g0010 Nicotiana tabacum
Nn1g08619 Nelumbo nucifera
Nn5g28066 Nelumbo nucifera
Oeu008877.2 Olea europaea
Oeu012743.2 Olea europaea
Os03g0262100 Oryza sativa ssp. japonica
Peaxi162Scf00011g00139 Petunia axillaris
PGSC0003DMG400023776 Solanum tuberosum
Phvul.002G251000 Phaseolus vulgaris
Potri.001G209100 Populus trichocarpa
Potri.003G021500 Populus trichocarpa
Pp3c4_27250 Physcomitrium patens
Prupe.1G562800 Prunus persica
Psat1g220000 Pisum sativum
PSO170G0171 Papaver somniferum
PSO528G0257 Papaver somniferum
QL02p098623 Quercus lobata
RcHm_v2.0_Chr7g0224271 Rosa chinensis
Rhsim11G0131600 Rhododendron simsii
Sabra01G0161300 Salix brachista
Sabra03G0013400 Salix brachista
SalBow6G1776 Salvia bowleyana
SalBow6G5744 Salvia bowleyana
Sc14g0006850 Simmondsia chinensis
Sed0004816 Sechium edule
SEGI_00858 Sequoiadendron giganteum
SEGI_10500 Sequoiadendron giganteum
SGA_v2.0_scaffold110G31288 Striga asiatica
SMO367G0479 Selaginella moellendorffii
Sopen01g046960 Solanum pennellii
Sp1g10030 Schrenkiella parvula
TAR376G0767 Trochodendron aralioides
TAR628G0692 Trochodendron aralioides
THA.LOC104809537 Tarenaya hassleriana
Thecc.02G041200 Theobroma cacao
Thhalv10008698m.g Eutrema salsugineum
TPR.G2141 Trifolium pratense
TWI23G0644 Tripterygium wilfordii
TWI59G1038 Tripterygium wilfordii
unitig_26.g9556 Utricularia gibba
vmacro01776 Vaccinium macrocarpon
VMungo0251G3647 Vigna mungo
Zm00001eb011470 Zea mays
Zm00001eb398170 Zea mays

User provided reference genes

Program Settings