Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p09930 Brassica napus
Aa31LG3G8610 Aethionema arabicum
Actinidia02028 Actinidia chinensis
Actinidia05219 Actinidia chinensis
Actinidia14538 Actinidia chinensis
Actinidia32870 Actinidia chinensis
Actinidia34100 Actinidia chinensis
Ah.02g116500 Amaranthus hybridus
Ah.12g057370 Amaranthus hybridus
AL8G26610 Arabidopsis lyrata
Aqoxy7G00385 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SM3UTK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TLV18B Arachis hypogaea
AT5G52230 Arabidopsis thaliana
ATR0680G240 Amborella trichopoda
Atru.chr1.477_Atru.chr1.478 Acer truncatum
AUR62010600 Chenopodium quinoa
AUR62016000 Chenopodium quinoa
AUR62017242 Chenopodium quinoa
BcaB08g35576 Brassica carinata
BcaC04g20600 Brassica carinata
BraA10t43073Z Brassica rapa
C09p41640 Brassica napus
CAN.G1704.2 Capsicum annuum
CAN.G859.7 Capsicum annuum
CANSAT21G0383 Cannabis sativa
CARHR265150 Cardamine hirsuta
CARHR265160 Cardamine hirsuta
Carub.0008s1232 Capsella rubella
Ca_17554_v3 Cicer arietinum L.
Ca_25739_v3 Cicer arietinum L.
Cc02_g03140 Coffea canephora
Cc08_g14270 Coffea canephora
CDE02G3421 Ceratophyllum demersum
CDE06G0068 Ceratophyllum demersum
CDE08G0339 Ceratophyllum demersum
Cfa008307 Carpinus fangiana
Cfa012135 Carpinus fangiana
Ciclev10004647m.g Citrus clementina
Ciclev10018609m.g Citrus clementina
CiPaw.03G105100 Carya illinoinensis
CiPaw.04G065200 Carya illinoinensis
CiPaw.04G065400 Carya illinoinensis
CiPaw.11G138700 Carya illinoinensis
CiPaw.12G096100 Carya illinoinensis
ClCG01G002970 Citrullus lanatus
ClCG05G007960 Citrullus lanatus
COL.COLO4_14291 Corchorus olitorius
COL.COLO4_34422 Corchorus olitorius
Cpa.g.sc107.38 Carica papaya
CsaV3_3G017000 Cucumis sativus L.
CsaV3_5G003080 Cucumis sativus L.
CSS0014139 Camellia sinensis var. sinensis
CSS0024294 Camellia sinensis var. sinensis
DCAR_008413 Daucus carota
DCAR_017490 Daucus carota
DCAR_020242 Daucus carota
Dinv28454 Davidia involucrata
Dinv37667 Davidia involucrata
Dinv38981 Davidia involucrata
Duzib068G0234 Durio zibethinus
Duzib084G0866 Durio zibethinus
Duzib205G1307 Durio zibethinus
Duzib205G1602 Durio zibethinus
ECA232G0949 Erigeron canadensis
ECA238G0526 Erigeron canadensis
ECA240G0038 Erigeron canadensis
EL10Ac5g12763 Beta vulgaris
Eucgr.K00243 Eucalyptus grandis
FAN01G0032 Fragaria x ananassa
FAN03G2536 Fragaria x ananassa
FAN03G3032 Fragaria x ananassa
FAN04G1936 Fragaria x ananassa
FAN06G4083 Fragaria x ananassa
FAN06G4500 Fragaria x ananassa
FAN08G2904 Fragaria x ananassa
FAN10G1120 Fragaria x ananassa
FAN13G1265 Fragaria x ananassa
FAN18G3894 Fragaria x ananassa
FvH4_5g01860 Fragaria vesca
FvH4_7g29290 Fragaria vesca
Glyma.01G217800 Glycine max
Glyma.05G205100 Glycine max
Glyma.08G012000 Glycine max
Glyma.09G140500 Glycine max
Glyma.10G237300 Glycine max
Glyma.11G025500 Glycine max
Glyma.16G194400 Glycine max
Gohir.A11G021700 Gossypium hirsutum
Gohir.A12G258600 Gossypium hirsutum
Gohir.D11G021400 Gossypium hirsutum
Gohir.D12G259800 Gossypium hirsutum
Gorai.007G022700 Gossypium raimondii
Gorai.008G278300 Gossypium raimondii
GSVIVG01010547001 Vitis vinifera
HanXRQChr03g0084491 Helianthus annuus
HanXRQChr09g0253501 Helianthus annuus
HanXRQChr13g0416181 Helianthus annuus
HanXRQChr15g0495611 Helianthus annuus
Haze_08912 Corylus avellana
Haze_08915 Corylus avellana
Haze_13728 Corylus avellana
Hma1.2p1_0270F.1_g108150 Hydrangea macrophylla
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla
Hma1.2p1_2094F.1_g313935 Hydrangea macrophylla
Hund04730 Selenicereus undatus
Hund11497 Selenicereus undatus
Lalb_Chr01g0009251 Lupinus albus
Lalb_Chr09g0321101 Lupinus albus
Lalb_Chr16g0389811 Lupinus albus
Lalb_Chr19g0130921 Lupinus albus
Lj2C195G2 Lonicera japonica
Lj2g0020727 Lotus japonicus
Lj4g0003069 Lotus japonicus
Lj8C25T11 Lonicera japonica
Lsat_1_v5_gn_0_29760 Lactuca sativa
Lsat_1_v5_gn_6_101581 Lactuca sativa
Lsat_1_v5_gn_6_86801 Lactuca sativa
Lsat_1_v5_gn_6_86841 Lactuca sativa
Manes.02G024900 Manihot esculenta
Manes.14G027100 Manihot esculenta
Manes.14G027150 Manihot esculenta
MBI17_g21053_MAGBIO Magnolia biondii
MBI18_g01149_MAGBIO Magnolia biondii
MD01G1199300 Malus domestica
MD06G1076800 Malus domestica
MD07G1267200 Malus domestica
MD14G1098200 Malus domestica
Medtr6g054960 Medicago truncatula
Medtr8g096930 Medicago truncatula
MELO3C005647.2 Cucumis melo
MELO3C006898.2 Cucumis melo
MELO3C033074.2 Cucumis melo
MELO3C033355.2 Cucumis melo
Migut.E01117 Erythranthe guttata
Migut.F00353 Erythranthe guttata
MSTRG.1884 Avicennia marina
MSTRG.27123 Avicennia marina
MSTRG.8747 Avicennia marina
Nitab4.5_0000716g0220 Nicotiana tabacum
Nitab4.5_0001508g0010 Nicotiana tabacum
Nitab4.5_0003154g0060 Nicotiana tabacum
Nitab4.5_0003604g0010 Nicotiana tabacum
Nitab4.5_0003731g0010 Nicotiana tabacum
Nitab4.5_0012492g0010 Nicotiana tabacum
Nn1g01417 Nelumbo nucifera
Nn6g33544 Nelumbo nucifera
Oeu024236.1 Olea europaea
Oeu048797.1 Olea europaea
Oeu048798.1 Olea europaea
Oeu049557.4 Olea europaea
Oeu056239.2 Olea europaea
Os04g0192775 Oryza sativa ssp. japonica
Os04g0193200 Oryza sativa ssp. japonica
Os04g0266400 Oryza sativa ssp. japonica
Os04g0273900 Oryza sativa ssp. japonica
Os04g0613800 Oryza sativa ssp. japonica
Os08g0206700 Oryza sativa ssp. japonica
Os08g0206800 Oryza sativa ssp. japonica
Peaxi162Scf00714g00124 Petunia axillaris
Peaxi162Scf00915g00037 Petunia axillaris
PGR142G4230 Punica granatum
PGSC0003DMG400003059 Solanum tuberosum
PGSC0003DMG400014327 Solanum tuberosum
Phvul.002G155600 Phaseolus vulgaris
Phvul.002G287000 Phaseolus vulgaris
Phvul.004G117900 Phaseolus vulgaris
Phvul.007G068300 Phaseolus vulgaris
Potri.012G138300 Populus trichocarpa
Potri.015G140100 Populus trichocarpa
Prupe.2G292800 Prunus persica
Prupe.5G094800 Prunus persica
Psat0s2241g0160 Pisum sativum
Psat7g035760 Pisum sativum
PSO478G3392 Papaver somniferum
PSO782G3336 Papaver somniferum
PSO782G5503 Papaver somniferum
QL09p014562 Quercus lobata
QL12p017888 Quercus lobata
RcHm_v2.0_Chr1g0377031 Rosa chinensis
RcHm_v2.0_Chr7g0198661 Rosa chinensis
Rhsim03G0179300 Rhododendron simsii
Rhsim07G0092500 Rhododendron simsii
Rhsim07G0193800 Rhododendron simsii
Rhsim07G0193900 Rhododendron simsii
Sabra12G0103700 Salix brachista
Sabra15G0150800 Salix brachista
SalBow1G4878 Salvia bowleyana
Sc13g0008550 Simmondsia chinensis
Sc22g0000330 Simmondsia chinensis
Sed0002800 Sechium edule
Sed0005114 Sechium edule
SGA_v2.0_scaffold144G35962 Striga asiatica
SGA_v2.0_scaffold2G01065 Striga asiatica
SGA_v2.0_scaffold385G50464 Striga asiatica
Solyc03g025970.3 Solanum lycopersicum
Solyc08g080690.4 Solanum lycopersicum
Sopen03g004790 Solanum pennellii
Sopen08g029000 Solanum pennellii
Sp6g14480 Schrenkiella parvula
TAR375G0279 Trochodendron aralioides
TAR629G1002 Trochodendron aralioides
TAR636G1398 Trochodendron aralioides
THA.LOC104800257 Tarenaya hassleriana
Thecc.03G174900 Theobroma cacao
Thecc.03G274800 Theobroma cacao
Thhalv10012954m.g Eutrema salsugineum
TPR.G10738 Trifolium pratense
TPR.G12816 Trifolium pratense
TWI14G1277 Tripterygium wilfordii
TWI60G1121 Tripterygium wilfordii
TWI81G1024 Tripterygium wilfordii
unitig_92.g28264 Utricularia gibba
vmacro06696 Vaccinium macrocarpon
vmacro13941 Vaccinium macrocarpon
vmacro13942 Vaccinium macrocarpon
VMungo0251G2110 Vigna mungo
VMungo0464G1159 Vigna mungo
VMungo1215G1122 Vigna mungo
Zm00001eb048990 Zea mays
Zm00001eb171140 Zea mays
Zm00001eb338110 Zea mays
Zm00001eb376080 Zea mays
Zm00001eb413780 Zea mays
Zm00001eb420370 Zea mays
Zm00001eb430800 Zea mays

User provided reference genes

Program Settings