Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p13610 Brassica napus
A06p09860 Brassica napus
A07p10600 Brassica napus
A08p15620 Brassica napus
A09p26510 Brassica napus
A09p26520 Brassica napus
Aa31LG6G4330 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.27 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3661 Anthoceros agrestis
Actinidia19325 Actinidia chinensis
Ah.07g202160 Amaranthus hybridus
Ah.07g202180 Amaranthus hybridus
Ah.14g078380 Amaranthus hybridus
AL3G11250 Arabidopsis lyrata
AL6G47790 Arabidopsis lyrata
AL7G31420 Arabidopsis lyrata
Aqoxy3G02912 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5LU28L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6Q9P5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QJ8247 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z4FKUN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQTJ2Z Arachis hypogaea
AT3G01020 Arabidopsis thaliana
AT4G04080 Arabidopsis thaliana
AT4G22220 Arabidopsis thaliana
ATR0594G147 Amborella trichopoda
ATR0996G004 Amborella trichopoda
Atru.chr7.2036 Acer truncatum
Atru.chr9.2485 Acer truncatum
AUR62008202 Chenopodium quinoa
AUR62030955 Chenopodium quinoa
BcaB01g01787 Brassica carinata
BcaB03g11724 Brassica carinata
BcaC01g00768 Brassica carinata
BcaC04g21268 Brassica carinata
BcaC06g33096 Brassica carinata
BcaC09g51149 Brassica carinata
BcaNung03752 Brassica carinata
BolC1t01598H Brassica oleracea
BolC3t20686H Brassica oleracea
BolC9t56198H Brassica oleracea
BraA01t01302Z Brassica rapa
BraA08t33542Z Brassica rapa
BraA09t38225Z Brassica rapa
C01p16490 Brassica napus
C03p50070 Brassica napus
C03p84070 Brassica napus
C09p33640 Brassica napus
CAN.G1281.1 Capsicum annuum
CARHR057210 Cardamine hirsuta
CARHR229120 Cardamine hirsuta
Carub.0003s0116 Capsella rubella
Carub.0005s0535 Capsella rubella
Carub.0007s1910 Capsella rubella
Ca_14222_v3 Cicer arietinum L.
Ca_16171_v3 Cicer arietinum L.
CBR_g24155 Chara braunii
Cc00_g18960 Coffea canephora
CDE06G0765 Ceratophyllum demersum
CDE07G1259 Ceratophyllum demersum
Cfa019141 Carpinus fangiana
Cfa025401 Carpinus fangiana
Ciclev10022532m.g Citrus clementina
Ciclev10022536m.g Citrus clementina
CiPaw.11G025600 Carya illinoinensis
CiPaw.12G026900 Carya illinoinensis
ClCG01G013180 Citrullus lanatus
COL.COLO4_19095 Corchorus olitorius
COL.COLO4_30054 Corchorus olitorius
Cpa.g.sc76.42 Carica papaya
Cre13.g568850 Chlamydomonas reinhardtii
CsaV3_1G008530 Cucumis sativus L.
CSS0032737 Camellia sinensis var. sinensis
DCAR_026140 Daucus carota
Dinv20646 Davidia involucrata
Dinv20650 Davidia involucrata
Dinv38581 Davidia involucrata
Duzib106G1347 Durio zibethinus
Duzib128G0685 Durio zibethinus
ECA232G4156 Erigeron canadensis
EL10Ac5g10739 Beta vulgaris
Eucgr.B00303 Eucalyptus grandis
Eucgr.K02839 Eucalyptus grandis
FAN04G1464 Fragaria x ananassa
FAN08G3503 Fragaria x ananassa
FAN13G1561 Fragaria x ananassa
FAN18G0135 Fragaria x ananassa
FAN18G2139 Fragaria x ananassa
FAN18G3065 Fragaria x ananassa
FvH4_5g05360 Fragaria vesca
Glyma.05G038100 Glycine max
Glyma.06G182000 Glycine max
Glyma.13G146800 Glycine max
Glyma.17G088900 Glycine max
Gohir.A02G105801 Gossypium hirsutum
Gohir.A03G154550 Gossypium hirsutum
Gohir.A08G226900 Gossypium hirsutum
Gohir.D02G151350 Gossypium hirsutum
Gohir.D03G077800 Gossypium hirsutum
Gohir.D08G247300 Gossypium hirsutum
Gorai.003G086200 Gossypium raimondii
Gorai.004G263800 Gossypium raimondii
Gorai.005G169800 Gossypium raimondii
Gorai.005G199200 Gossypium raimondii
GSVIVG01013764001 Vitis vinifera
HanXRQChr09g0272161 Helianthus annuus
HanXRQChr16g0504321 Helianthus annuus
Haze_07507 Corylus avellana
Haze_27010 Corylus avellana
Hma1.2p1_0176F.1_g077350 Hydrangea macrophylla
Hma1.2p1_0592F.1_g185390 Hydrangea macrophylla
Hma1.2p1_1314F.1_g275100 Hydrangea macrophylla
HPP92_008307 Vanilla planifolia
Hund02747 Selenicereus undatus
Hund09442 Selenicereus undatus
Lalb_Chr07g0182781 Lupinus albus
Lalb_Chr08g0236551 Lupinus albus
Lalb_Chr12g0201621 Lupinus albus
Lalb_Chr13g0297771 Lupinus albus
Lj1g0007532 Lotus japonicus
Lj1g0018366 Lotus japonicus
Lj4g0023808 Lotus japonicus
Lj9A447G31 Lonicera japonica
Lsat_1_v5_gn_4_66781 Lactuca sativa
Lsat_1_v5_gn_4_75140 Lactuca sativa
Manes.06G105500 Manihot esculenta
Manes.14G065100 Manihot esculenta
Mapoly0158s0005 Marchantia polymorpha
MBI10_g28010_MAGBIO Magnolia biondii
MBI15_g39386_MAGBIO Magnolia biondii
MBI16_g27086_MAGBIO Magnolia biondii
MCO01G639 Micromonas commoda
MCO16G333 Micromonas commoda
MD03G1171600 Malus domestica
MD06G1173200 Malus domestica
MD13G1211600 Malus domestica
MD13G1211700 Malus domestica
MD14G1077900 Malus domestica
MD14G1179700 Malus domestica
Medtr3g077720 Medicago truncatula
Medtr3g077730 Medicago truncatula
MELO3C002268.2 Cucumis melo
Migut.D01936 Erythranthe guttata
Migut.I00001 Erythranthe guttata
MSTRG.11462 Avicennia marina
MSTRG.9678 Avicennia marina
Nitab4.5_0000025g0580 Nicotiana tabacum
Nitab4.5_0000514g0140 Nicotiana tabacum
Nitab4.5_0001724g0020 Nicotiana tabacum
Nitab4.5_0002403g0030 Nicotiana tabacum
Nn1g03890 Nelumbo nucifera
Nn3g16856 Nelumbo nucifera
Nn4g22742 Nelumbo nucifera
Oeu035996.1 Olea europaea
Oeu040834.1 Olea europaea
Oeu057356.2 Olea europaea
Os05g0568100 Oryza sativa ssp. japonica
Peaxi162Scf00009g00019 Petunia axillaris
PGR083G1373 Punica granatum
PGSC0003DMG400018149 Solanum tuberosum
PGSC0003DMG400030721 Solanum tuberosum
Phvul.003G201000 Phaseolus vulgaris
Phvul.009G178100 Phaseolus vulgaris
Potri.012G081700 Populus trichocarpa
Potri.015G077500 Populus trichocarpa
Pp3c11_3040 Physcomitrium patens
Pp3c17_2230 Physcomitrium patens
Pp3c2_36100 Physcomitrium patens
PRCOL_00001962 Prasinoderma coloniale
Prupe.5G172700 Prunus persica
Psat0s2168g0040 Pisum sativum
PSO017G4259 Papaver somniferum
PSO198G0102 Papaver somniferum
PSO478G3372 Papaver somniferum
PSO566G0270 Papaver somniferum
PSO782G3206 Papaver somniferum
PSO782G3333 Papaver somniferum
QL10p010277 Quercus lobata
QL10p011470 Quercus lobata
RcHm_v2.0_Chr7g0193471 Rosa chinensis
Rhsim08G0173100 Rhododendron simsii
Rhsim08G0173200 Rhododendron simsii
Rhsim12G0164800 Rhododendron simsii
Sabra12G0058500 Salix brachista
Sabra15G0102100 Salix brachista
SalBow5G2356 Salvia bowleyana
SalBow6G5723 Salvia bowleyana
Sc04g0001790 Simmondsia chinensis
Sc12g0005290 Simmondsia chinensis
Sed0010153 Sechium edule
Sed0017416 Sechium edule
SEGI_16896 Sequoiadendron giganteum
SEGI_19154 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31829 Striga asiatica
SGA_v2.0_scaffold25G10836 Striga asiatica
SGA_v2.0_scaffold90G27906 Striga asiatica
SHI29851 Sapria himalayana
SMO147G0406 Selaginella moellendorffii
SMO301G0069 Selaginella moellendorffii
SMO358G0626 Selaginella moellendorffii
Solyc03g112900.3 Solanum lycopersicum
Solyc07g007450.3 Solanum lycopersicum
Sopen03g031980 Solanum pennellii
Sopen07g003500 Solanum pennellii
Sp7g20350 Schrenkiella parvula
TAR374G0097 Trochodendron aralioides
TAR629G1523 Trochodendron aralioides
THA.LOC104806319 Tarenaya hassleriana
THA.LOC104812982 Tarenaya hassleriana
Thecc.03G013300 Theobroma cacao
Thecc.05G189000 Theobroma cacao
Thhalv10022179m.g Eutrema salsugineum
Thhalv10026418m.g Eutrema salsugineum
Thhalv10028164m.g Eutrema salsugineum
Thhalv10029418m.g Eutrema salsugineum
TPR.G34242 Trifolium pratense
TPR.G9101 Trifolium pratense
TPR.G957 Trifolium pratense
TWI23G0235 Tripterygium wilfordii
TWI75G1893 Tripterygium wilfordii
unitig_26.g8801 Utricularia gibba
unitig_750.g28469 Utricularia gibba
vmacro16613 Vaccinium macrocarpon
vmacro21173 Vaccinium macrocarpon
vmacro21175 Vaccinium macrocarpon
VMungo0720G2000 Vigna mungo
VMungo1215G0374 Vigna mungo
VMungo1309G0466 Vigna mungo
Zm00001eb030940 Zea mays
Zm00001eb157650 Zea mays
Zm00001eb359620 Zea mays

User provided reference genes

Program Settings