Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p18510 Brassica napus
A06p28130 Brassica napus
Aa31LG4G17660 Aethionema arabicum
Actinidia06147 Actinidia chinensis
Actinidia34223 Actinidia chinensis
AL5G28980 Arabidopsis lyrata
AL6G35690 Arabidopsis lyrata
Aqoxy5G02855 Aquilegia oxysepala
Aqoxy7G00072 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1A6HQL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8V1LLT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G37INR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MC3H0I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SS9NKM Arachis hypogaea
AT3G49250 Arabidopsis thaliana
ATR0602G200 Amborella trichopoda
ATR0602G220 Amborella trichopoda
Atru.chr12.2212 Acer truncatum
AUR62019406 Chenopodium quinoa
BcaB01g00734 Brassica carinata
BcaB02g09581 Brassica carinata
BcaC01g02396 Brassica carinata
BcaC07g39396 Brassica carinata
BolC3t18824H Brassica oleracea
BolC8t50042H Brassica oleracea
BraA06t24929Z Brassica rapa
C03p65710 Brassica napus
C08p24250 Brassica napus
CAN.G312.1 Capsicum annuum
CAN.G481.12 Capsicum annuum
CAN.G481.9 Capsicum annuum
CAN.G926.9 Capsicum annuum
CANSAT21G1954 Cannabis sativa
CANSAT56G1265 Cannabis sativa
CARHR158090 Cardamine hirsuta
CARHR181380 Cardamine hirsuta
CARHR218460 Cardamine hirsuta
Carub.0005s1547 Capsella rubella
Ca_09514_v3 Cicer arietinum L.
Ca_16709_v3 Cicer arietinum L.
Ca_30064_v3 Cicer arietinum L.
Cc09_g00180 Coffea canephora
CDE03G0337 Ceratophyllum demersum
CDE10G0237 Ceratophyllum demersum
Ciclev10011757m.g Citrus clementina
Ciclev10012614m.g Citrus clementina
CiPaw.02G041300 Carya illinoinensis
CiPaw.06G046100 Carya illinoinensis
ClCG00G004120 Citrullus lanatus
ClCG01G000420 Citrullus lanatus
Cpa.g.sc39.5 Carica papaya
CsaV3_1G033480 Cucumis sativus L.
CsaV3_3G019830 Cucumis sativus L.
CsaV3_5G000480 Cucumis sativus L.
CSS0028486 Camellia sinensis var. sinensis
CSS0030903 Camellia sinensis var. sinensis
CSS0034499 Camellia sinensis var. sinensis
CSS0050389 Camellia sinensis var. sinensis
DCAR_003024 Daucus carota
DCAR_003026 Daucus carota
DCAR_003027 Daucus carota
DCAR_008927 Daucus carota
DCAR_008929 Daucus carota
DCAR_008932 Daucus carota
DCAR_010599 Daucus carota
DCAR_018284 Daucus carota
Dinv29277 Davidia involucrata
Dinv35338 Davidia involucrata
Duzib068G0185 Durio zibethinus
Duzib084G0071 Durio zibethinus
Duzib205G0300 Durio zibethinus
ECA233G1076 Erigeron canadensis
ECA238G1287 Erigeron canadensis
EL10Ac3g05279 Beta vulgaris
EL10Ac3g05280 Beta vulgaris
Eucgr.H00020 Eucalyptus grandis
Eucgr.H02781 Eucalyptus grandis
Eucgr.H05027 Eucalyptus grandis
FAN01G1356 Fragaria x ananassa
FAN03G1268 Fragaria x ananassa
FAN03G2990 Fragaria x ananassa
FAN03G3021 Fragaria x ananassa
FAN06G0828 Fragaria x ananassa
FAN06G3021 Fragaria x ananassa
FAN10G0061 Fragaria x ananassa
FAN10G1688 Fragaria x ananassa
FAN10G3430 Fragaria x ananassa
FAN10G3885 Fragaria x ananassa
FAN10G4108 Fragaria x ananassa
FvH4_7g16780 Fragaria vesca
FvH4_7g31551 Fragaria vesca
FvH4_7g32260 Fragaria vesca
Glyma.04G235500 Glycine max
Glyma.06G129200 Glycine max
Glyma.19G256600 Glycine max
Gohir.A12G249700 Gossypium hirsutum
Gohir.D12G250500 Gossypium hirsutum
Gorai.008G268600 Gossypium raimondii
GSVIVG01038554001 Vitis vinifera
HanXRQChr03g0071171 Helianthus annuus
HanXRQChr04g0100491 Helianthus annuus
HanXRQChr08g0225261 Helianthus annuus
HanXRQChr08g0225271 Helianthus annuus
HanXRQChr08g0225321 Helianthus annuus
Haze_05841 Corylus avellana
Haze_05842 Corylus avellana
Haze_15669 Corylus avellana
Hma1.2p1_0003F.1_g003770 Hydrangea macrophylla
Hma1.2p1_0404F.1_g145400 Hydrangea macrophylla
Hma1.2p1_2248F.1_g318020 Hydrangea macrophylla
HPP92_001908 Vanilla planifolia
Hund11659 Selenicereus undatus
Hund21006 Selenicereus undatus
Lalb_Chr08g0240221 Lupinus albus
Lalb_Chr10g0100591 Lupinus albus
Lalb_Chr11g0066881 Lupinus albus
Lalb_Chr20g0120921 Lupinus albus
Lj1g0004421 Lotus japonicus
Lj1g0014928 Lotus japonicus
Lj1g0018421 Lotus japonicus
Lj1g0021086 Lotus japonicus
Lj1g0024637 Lotus japonicus
Lj3A904G78 Lonicera japonica
Lj6g0010658 Lotus japonicus
Lsat_1_v5_gn_2_136121 Lactuca sativa
Lsat_1_v5_gn_8_5221 Lactuca sativa
Lsat_1_v5_gn_9_50520 Lactuca sativa
Manes.01G245700 Manihot esculenta
Manes.10G072000 Manihot esculenta
Manes.17G027400 Manihot esculenta
MBI07_g37059_MAGBIO Magnolia biondii
MD01G1082600 Malus domestica
MD01G1218300 Malus domestica
MD07G1150900 Malus domestica
MD07G1288200 Malus domestica
Medtr3g491560 Medicago truncatula
Medtr7g117665 Medicago truncatula
MELO3C005887.2 Cucumis melo
MELO3C008498.2 Cucumis melo
Migut.F00210 Erythranthe guttata
Migut.F01028 Erythranthe guttata
MSTRG.51 Avicennia marina
MSTRG.8651 Avicennia marina
Nitab4.5_0000015g0280 Nicotiana tabacum
Nitab4.5_0000548g0100 Nicotiana tabacum
Nitab4.5_0006933g0020 Nicotiana tabacum
Nitab4.5_0009932g0030 Nicotiana tabacum
Nn1g00259 Nelumbo nucifera
Oeu040723.1 Olea europaea
Oeu041053.1 Olea europaea
Os01g0235200 Oryza sativa ssp. japonica
Peaxi162Scf00445g01025 Petunia axillaris
Peaxi162Scf00618g00337 Petunia axillaris
Peaxi162Scf00740g00139 Petunia axillaris
PGR044G2718 Punica granatum
Phvul.006G113900 Phaseolus vulgaris
Phvul.009G052300 Phaseolus vulgaris
Potri.002G172000 Populus trichocarpa
Potri.012G016000 Populus trichocarpa
Potri.015G012600 Populus trichocarpa
Pp3c22_17800 Physcomitrium patens
Prupe.2G190000 Prunus persica
Prupe.2G309700 Prunus persica
Psat3g002360 Pisum sativum
Psat5g076840 Pisum sativum
Psat5g076960 Pisum sativum
PSO135G0284 Papaver somniferum
PSO384G4859 Papaver somniferum
PSO541G2503 Papaver somniferum
QL09p008790 Quercus lobata
QL09p008921 Quercus lobata
QL09p009101 Quercus lobata
RcHm_v2.0_Chr1g0359991 Rosa chinensis
RcHm_v2.0_Chr1g0380541 Rosa chinensis
Rhsim03G0209000 Rhododendron simsii
Rhsim06G0231600 Rhododendron simsii
Rhsim06G0232000 Rhododendron simsii
Rhsim09G0205800 Rhododendron simsii
Sabra07G0018600 Salix brachista
Sabra12G0016100 Salix brachista
Sabra18G0120100 Salix brachista
SalBow2G1109 Salvia bowleyana
Sc25g0000900 Simmondsia chinensis
Sed0011102 Sechium edule
Sed0012235 Sechium edule
Sed0016547 Sechium edule
Sed0025154 Sechium edule
SEGI_10612 Sequoiadendron giganteum
SEGI_24096 Sequoiadendron giganteum
SGA_v2.0_scaffold192G40544 Striga asiatica
SGA_v2.0_scaffold44G16806 Striga asiatica
SGA_v2.0_scaffold55G19771 Striga asiatica
SHI02369 Sapria himalayana
SMO147G0358 Selaginella moellendorffii
Solyc03g071790.1 Solanum lycopersicum
Solyc03g071800.2 Solanum lycopersicum
Solyc03g071820.2 Solanum lycopersicum
Solyc03g071830.1 Solanum lycopersicum
Solyc03g083170.3 Solanum lycopersicum
Solyc03g083210.3 Solanum lycopersicum
Solyc03g150133.1 Solanum lycopersicum
Solyc06g051990.4 Solanum lycopersicum
Solyc11g032140.1 Solanum lycopersicum
Solyc11g032160.1 Solanum lycopersicum
Sopen03g019410 Solanum pennellii
Sopen03g022630 Solanum pennellii
Sopen03g022940 Solanum pennellii
Sopen03g022960 Solanum pennellii
Sopen06g018050 Solanum pennellii
Sopen11g015170 Solanum pennellii
Sp3g24400 Schrenkiella parvula
Sp5g12830 Schrenkiella parvula
TAR375G0704 Trochodendron aralioides
THA.LOC104798900 Tarenaya hassleriana
Thecc.03G199400 Theobroma cacao
Thhalv10010429m.g Eutrema salsugineum
TPR.G19386 Trifolium pratense
TPR.G3709 Trifolium pratense
TPR.G4753 Trifolium pratense
TWI14G0383 Tripterygium wilfordii
TWI23G0785 Tripterygium wilfordii
unitig_747.g21743 Utricularia gibba
vmacro06385 Vaccinium macrocarpon
vmacro10123 Vaccinium macrocarpon
vmacro22637 Vaccinium macrocarpon
VMungo0540G0270 Vigna mungo
VMungo1309G1923 Vigna mungo
Zm00001eb119030 Zea mays
Zm00001eb182960 Zea mays
Zm00001eb203830 Zea mays
Zm00001eb217050 Zea mays

User provided reference genes

Program Settings