Gene: Sopen03g022630
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g022630
- Transcript Identifier Sopen03g022630.2
- Gene Type Coding gene
- Location Spenn-ch03 : 54129519-54142038 : positive
Gene Family Information
- ID HOM05D001081
- #Genes/#Species 568/97
- Phylogenetic origin
- ID ORTHO05D003320
- #Genes/#Species 231/90
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen03g022630.2
Descriptions
- Description Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation. | DEFECTIVE IN MERISTEM SILENCING 3 (DMS3) | BEST Arabidopsis thaliana protein match is: gamma-irradiation and mitomycin c induced 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT3G49250 |
| GO:0080188 | ISO | PLAZA Integrative Orthology | gene silencing by RNA-directed DNA methylation | AT3G49250 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT3G49250 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT3G49250 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G49250 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT3G49250 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
No InterPro domains detected for this gene.
| Mapman id | Description |
|---|---|
| 12.5.1.14.2 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DMS3 |