Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17720 Brassica napus
A01p31060 Brassica napus
A03p56750 Brassica napus
A07p08290 Brassica napus
Aa31LG5G11820 Aethionema arabicum
Aa31LG8G10770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3188 Anthoceros agrestis
Actinidia00824 Actinidia chinensis
Actinidia03670 Actinidia chinensis
Actinidia33189 Actinidia chinensis
Actinidia35866 Actinidia chinensis
AL3G39160 Arabidopsis lyrata
AL678U10010 Arabidopsis lyrata
AL7G26470 Arabidopsis lyrata
Aqoxy2G03874 Aquilegia oxysepala
Aqoxy4G02255 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0LB7N3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0ZR0UF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.11ZMB3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G81GNA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LEYW5Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z602RZ Arachis hypogaea
AT3G24110 Arabidopsis thaliana
AT4G26470 Arabidopsis thaliana
ATR0751G041 Amborella trichopoda
ATR1145G044 Amborella trichopoda
Atru.chr2.3887 Acer truncatum
Atru.chr4.1707 Acer truncatum
AUR62017174 Chenopodium quinoa
AUR62020819 Chenopodium quinoa
AUR62020821 Chenopodium quinoa
AUR62032917 Chenopodium quinoa
AUR62035632 Chenopodium quinoa
BcaB04g20400 Brassica carinata
BcaB06g26588 Brassica carinata
BcaC06g32742 Brassica carinata
BcaC06g32744 Brassica carinata
BcaC06g35622 Brassica carinata
BcaC09g50712 Brassica carinata
BcaNung02416 Brassica carinata
BolC1t02170H Brassica oleracea
BolC1t03907H Brassica oleracea
BolC7t41771H Brassica oleracea
BolC7t45983H Brassica oleracea
BraA01t01727Z Brassica rapa
BraA01t03231Z Brassica rapa
BraA03t14743Z Brassica rapa
BraA07t28612Z Brassica rapa
C01p22390 Brassica napus
C01p39580 Brassica napus
C07p12860 Brassica napus
C07p55310 Brassica napus
CAN.G1201.1 Capsicum annuum
CAN.G1635.3 Capsicum annuum
CAN.G1800.4 Capsicum annuum
CAN.G1904.3 Capsicum annuum
CAN.G492.57 Capsicum annuum
CANSAT11G1848 Cannabis sativa
CANSAT78G2196 Cannabis sativa
CARHR100090 Cardamine hirsuta
CARHR234050 Cardamine hirsuta
Carub.0003s2439 Capsella rubella
Carub.0007s1443 Capsella rubella
Ca_22542_v3 Cicer arietinum L.
Cc03_g07790 Coffea canephora
Cc05_g15620 Coffea canephora
CDE06G1963 Ceratophyllum demersum
Cfa014917 Carpinus fangiana
Cfa016953 Carpinus fangiana
Ciclev10005743m.g Citrus clementina
Ciclev10009385m.g Citrus clementina
CiPaw.01G121600 Carya illinoinensis
CiPaw.02G066400 Carya illinoinensis
CiPaw.11G209900 Carya illinoinensis
ClCG05G003310 Citrullus lanatus
ClCG10G004530 Citrullus lanatus
COL.COLO4_07781 Corchorus olitorius
Cpa.g.sc12.76 Carica papaya
Cre03.g202600 Chlamydomonas reinhardtii
Cre06.g306700 Chlamydomonas reinhardtii
Cre06.g306750 Chlamydomonas reinhardtii
CsaV3_3G004350 Cucumis sativus L.
CsaV3_3G010940 Cucumis sativus L.
CSS0002678 Camellia sinensis var. sinensis
CSS0024416 Camellia sinensis var. sinensis
CSS0037305 Camellia sinensis var. sinensis
CSS0038701 Camellia sinensis var. sinensis
CSS0046384 Camellia sinensis var. sinensis
DCAR_002260 Daucus carota
DCAR_013762 Daucus carota
DCAR_017601 Daucus carota
Dinv19649 Davidia involucrata
Dinv29593 Davidia involucrata
Dinv38236 Davidia involucrata
Dinv40904 Davidia involucrata
Duzib151G0887 Durio zibethinus
Duzib212G0583 Durio zibethinus
Duzib213G0303 Durio zibethinus
ECA236G4339 Erigeron canadensis
ECA246G4996 Erigeron canadensis
ECA248G3470 Erigeron canadensis
EL10Ac4g07497 Beta vulgaris
EL10Ac9g21991 Beta vulgaris
Eucgr.F03649 Eucalyptus grandis
Eucgr.H02783 Eucalyptus grandis
FAN07G0562 Fragaria x ananassa
FAN11G0368 Fragaria x ananassa
FAN12G1439 Fragaria x ananassa
FAN12G4214 Fragaria x ananassa
FAN17G2668 Fragaria x ananassa
FAN21G3576 Fragaria x ananassa
FAN22G1563 Fragaria x ananassa
FAN25G3162 Fragaria x ananassa
FvH4_3g41720 Fragaria vesca
FvH4_4g15760 Fragaria vesca
Glyma.08G265200 Glycine max
Glyma.08G340400 Glycine max
Glyma.16G095700 Glycine max
Gohir.A01G095000 Gossypium hirsutum
Gohir.A04G001500 Gossypium hirsutum
Gohir.A10G124200 Gossypium hirsutum
Gohir.D01G079401 Gossypium hirsutum
Gohir.D05G387900 Gossypium hirsutum
Gohir.D10G142100 Gossypium hirsutum
Gorai.002G104000 Gossypium raimondii
Gorai.009G454500 Gossypium raimondii
Gorai.011G158400 Gossypium raimondii
GSVIVG01014761001 Vitis vinifera
GSVIVG01021071001 Vitis vinifera
HanXRQChr01g0022271 Helianthus annuus
HanXRQChr02g0058901 Helianthus annuus
HanXRQChr05g0160151 Helianthus annuus
HanXRQChr17g0558491 Helianthus annuus
Haze_09909 Corylus avellana
Haze_11607 Corylus avellana
Hma1.2p1_0187F.1_g082120 Hydrangea macrophylla
HPP92_017861 Vanilla planifolia
Hund22974 Selenicereus undatus
Lalb_Chr03g0040901 Lupinus albus
Lalb_Chr05g0229021 Lupinus albus
Lj1A899T33 Lonicera japonica
Lj1g0019833 Lotus japonicus
Lj3C413T11 Lonicera japonica
Lj4g0026437 Lotus japonicus
Lj8C182T18 Lonicera japonica
Lsat_1_v5_gn_1_73080 Lactuca sativa
Lsat_1_v5_gn_4_51340 Lactuca sativa
Lsat_1_v5_gn_6_60341 Lactuca sativa
Lsat_1_v5_gn_7_116180 Lactuca sativa
Manes.05G205300 Manihot esculenta
Manes.15G053400 Manihot esculenta
MBI07_g32037_MAGBIO Magnolia biondii
MBI15_g26853_MAGBIO Magnolia biondii
MCO01G702 Micromonas commoda
MD03G1041500 Malus domestica
MD04G1008500 Malus domestica
MD11G1042400 Malus domestica
Medtr7g451050 Medicago truncatula
Medtr8g070510 Medicago truncatula
MELO3C006312.2 Cucumis melo
MELO3C014128.2 Cucumis melo
Migut.H01719 Erythranthe guttata
Migut.N00380 Erythranthe guttata
MSTRG.13039 Avicennia marina
MSTRG.14517 Avicennia marina
MSTRG.7036 Avicennia marina
Nitab4.5_0000611g0220 Nicotiana tabacum
Nitab4.5_0000898g0020 Nicotiana tabacum
Nitab4.5_0001416g0020 Nicotiana tabacum
Nitab4.5_0001622g0090 Nicotiana tabacum
Nn1g07863 Nelumbo nucifera
Nn1g08295 Nelumbo nucifera
Oeu006272.1 Olea europaea
Oeu019687.1 Olea europaea
Os02g0198200 Oryza sativa ssp. japonica
Os05g0147300 Oryza sativa ssp. japonica
Os06g0609600 Oryza sativa ssp. japonica
Peaxi162Scf00047g00521 Petunia axillaris
Peaxi162Scf00902g00036 Petunia axillaris
PGR083G2636 Punica granatum
PGR083G2889 Punica granatum
PGSC0003DMG400008692 Solanum tuberosum
PGSC0003DMG400031286 Solanum tuberosum
Phvul.003G275000 Phaseolus vulgaris
Phvul.008G139100 Phaseolus vulgaris
Potri.001G314900 Populus trichocarpa
Potri.001G471100 Populus trichocarpa
Potri.017G054902 Populus trichocarpa
Pp3c16_16010 Physcomitrium patens
Pp3c6_22110 Physcomitrium patens
PRCOL_00005702 Prasinoderma coloniale
Prupe.1G007100 Prunus persica
Prupe.6G033600 Prunus persica
Psat3g153840 Pisum sativum
Psat4g111520 Pisum sativum
PSO017G2885 Papaver somniferum
PSO063G4211 Papaver somniferum
PSO541G6435 Papaver somniferum
PSO675G3130 Papaver somniferum
QL06p024567 Quercus lobata
QL08p000713 Quercus lobata
RcHm_v2.0_Chr4g0415381 Rosa chinensis
RcHm_v2.0_Chr5g0074811 Rosa chinensis
Rhsim04G0008300 Rhododendron simsii
Rhsim09G0056000 Rhododendron simsii
Sabra16G0199200 Salix brachista
Sabra16G0319700 Salix brachista
SalBow3G2755 Salvia bowleyana
SalBow8G1291 Salvia bowleyana
Sc03g0011750 Simmondsia chinensis
Sc13g0000160 Simmondsia chinensis
Sed0001038 Sechium edule
Sed0021293 Sechium edule
SEGI_24200 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05952 Striga asiatica
SGA_v2.0_scaffold92G28178 Striga asiatica
SMO232G0027 Selaginella moellendorffii
SMO301G0027 Selaginella moellendorffii
Solyc10g005750.3 Solanum lycopersicum
Sopen09g034900 Solanum pennellii
Sopen10g001720 Solanum pennellii
Sp3g21830 Schrenkiella parvula
Sp7g24410 Schrenkiella parvula
TAR626G0850 Trochodendron aralioides
TAR633G0348 Trochodendron aralioides
THA.LOC104808714 Tarenaya hassleriana
Thecc.04G204600 Theobroma cacao
Thecc.07G002700 Theobroma cacao
Thhalv10002654m.g Eutrema salsugineum
Thhalv10026168m.g Eutrema salsugineum
TPR.G20614 Trifolium pratense
TPR.G6119 Trifolium pratense
TWI38G1992 Tripterygium wilfordii
TWI39G1132 Tripterygium wilfordii
TWI73G0084 Tripterygium wilfordii
unitig_21.g20262 Utricularia gibba
vmacro00476 Vaccinium macrocarpon
vmacro09600 Vaccinium macrocarpon
vmacro09803 Vaccinium macrocarpon
VMungo0251G3218 Vigna mungo
VMungo1383G0271 Vigna mungo
Zm00001eb089080 Zea mays
Zm00001eb205910 Zea mays
Zm00001eb236060 Zea mays
Zm00001eb388550 Zea mays

User provided reference genes

Program Settings