Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p16450 Brassica napus
A10p27890 Brassica napus
Aa31LG3G17640 Aethionema arabicum
Aa31LG7G10400 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3785 Anthoceros agrestis
Actinidia13588 Actinidia chinensis
Actinidia29921 Actinidia chinensis
Ah.09g231390 Amaranthus hybridus
AL6G19770 Arabidopsis lyrata
AL7G27970 Arabidopsis lyrata
Aqoxy7G00823 Aquilegia oxysepala
Aqoxy7G03922 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3ELC0K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73EGBL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9EY2GF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A5902V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BNM70H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C4THFJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H2PW5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K25QHH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QP9L9J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U9XCTD Arachis hypogaea
AT4G25180 Arabidopsis thaliana
AT5G09380 Arabidopsis thaliana
ATR0075G038 Amborella trichopoda
ATR0075G046 Amborella trichopoda
ATR0618G075 Amborella trichopoda
Atru.chr1.820 Acer truncatum
Atru.chr7.1691 Acer truncatum
AUR62002228 Chenopodium quinoa
AUR62012000 Chenopodium quinoa
AUR62015439 Chenopodium quinoa
AUR62025187 Chenopodium quinoa
AUR62028987 Chenopodium quinoa
BcaB08g37210 Brassica carinata
BcaB08g37211 Brassica carinata
BcaC09g50799 Brassica carinata
BolC1t01991H Brassica oleracea
BolC9t59558H Brassica oleracea
BraA01t01600Z Brassica rapa
BraA10t44838Z Brassica rapa
C01p20600 Brassica napus
C09p67990 Brassica napus
CAN.G1156.43 Capsicum annuum
CAN.G937.6 Capsicum annuum
CANSAT56G0243 Cannabis sativa
CANSAT80G0667 Cannabis sativa
CARHR204030 Cardamine hirsuta
CARHR232580 Cardamine hirsuta
Carub.0006s0793 Capsella rubella
Carub.0007s1585 Capsella rubella
Ca_10018_v3 Cicer arietinum L.
Ca_12621_v3 Cicer arietinum L.
Ca_29583_v3 Cicer arietinum L.
CBR_g900 Chara braunii
Cc00_g21300 Coffea canephora
Cc02_g04450 Coffea canephora
Cc06_g12010 Coffea canephora
Cc07_g19450 Coffea canephora
Cc07_g19460 Coffea canephora
CDE06G2266 Ceratophyllum demersum
CDE07G1576 Ceratophyllum demersum
Cfa012924 Carpinus fangiana
Ciclev10005426m.g Citrus clementina
Ciclev10012311m.g Citrus clementina
CiPaw.03G207900 Carya illinoinensis
CiPaw.11G050400 Carya illinoinensis
ClCG03G015210 Citrullus lanatus
ClCG07G016860 Citrullus lanatus
COL.COLO4_14094 Corchorus olitorius
COL.COLO4_18113 Corchorus olitorius
Cpa.g.c34212 Carica papaya
Cpa.g.sc13.283 Carica papaya
Cpa.g.sc280.4 Carica papaya
Cre12.g497400 Chlamydomonas reinhardtii
CsaV3_1G040840 Cucumis sativus L.
CsaV3_4G004060 Cucumis sativus L.
CSS0016283 Camellia sinensis var. sinensis
CSS0025165 Camellia sinensis var. sinensis
CSS0033186 Camellia sinensis var. sinensis
DCAR_018090 Daucus carota
DCAR_028287 Daucus carota
Dinv01179 Davidia involucrata
Dinv26434 Davidia involucrata
Dinv34358 Davidia involucrata
Duzib150G1196 Durio zibethinus
Duzib168G0017 Durio zibethinus
Duzib205G1237 Durio zibethinus
ECA238G0042 Erigeron canadensis
ECA238G0930 Erigeron canadensis
EL10Ac3g05864 Beta vulgaris
EL10Ac8g19108 Beta vulgaris
Eucgr.C03553 Eucalyptus grandis
Eucgr.K00171 Eucalyptus grandis
FAN01G0329 Fragaria x ananassa
FAN03G0948 Fragaria x ananassa
FAN03G2473 Fragaria x ananassa
FAN06G3049 Fragaria x ananassa
FAN06G4847 Fragaria x ananassa
FAN10G3530 Fragaria x ananassa
FAN19G2247 Fragaria x ananassa
FAN23G2728 Fragaria x ananassa
FAN28G0900 Fragaria x ananassa
FvH4_1g08400 Fragaria vesca
FvH4_7g27240 Fragaria vesca
Glyma.01G232951 Glycine max
Glyma.09G230700 Glycine max
Glyma.12G006000 Glycine max
Glyma.13G109200 Glycine max
Glyma.17G050400 Glycine max
Gohir.A05G033200 Gossypium hirsutum
Gohir.A07G042300 Gossypium hirsutum
Gohir.A13G191400 Gossypium hirsutum
Gohir.D05G034700 Gossypium hirsutum
Gohir.D07G046600 Gossypium hirsutum
Gohir.D13G196800 Gossypium hirsutum
Gorai.001G049700 Gossypium raimondii
Gorai.009G035100 Gossypium raimondii
Gorai.013G225500 Gossypium raimondii
GSVIVG01014052001 Vitis vinifera
GSVIVG01015098001 Vitis vinifera
HanXRQChr07g0205761 Helianthus annuus
HanXRQChr12g0354101 Helianthus annuus
Haze_21281 Corylus avellana
Haze_25984 Corylus avellana
Haze_25992 Corylus avellana
Hma1.2p1_0432F.1_g151930 Hydrangea macrophylla
Hma1.2p1_0928F.1_g237720 Hydrangea macrophylla
HPP92_017926 Vanilla planifolia
HPP92_019067 Vanilla planifolia
Hund08727 Selenicereus undatus
Hund11842 Selenicereus undatus
Lalb_Chr01g0000261 Lupinus albus
Lalb_Chr12g0205791 Lupinus albus
Lalb_Chr13g0299511 Lupinus albus
Lalb_Chr16g0388951 Lupinus albus
Lalb_Chr19g0127271 Lupinus albus
Lj1A977G67 Lonicera japonica
Lj2g0026780 Lotus japonicus
Lj3g0023190 Lotus japonicus
Lj4g0001503 Lotus japonicus
Lj7A685G50 Lonicera japonica
Lj7A685G51 Lonicera japonica
Lju926A2T24 Lonicera japonica
Lsat_1_v5_gn_2_128520 Lactuca sativa
Lsat_1_v5_gn_5_141280 Lactuca sativa
Manes.03G039301 Manihot esculenta
Manes.14G037500 Manihot esculenta
Mapoly0031s0039 Marchantia polymorpha
MBI19_g26576_MAGBIO Magnolia biondii
MCO01G112 Micromonas commoda
MD01G1181300 Malus domestica
MD02G1088300 Malus domestica
MD07G1251400 Malus domestica
Medtr1g080300 Medicago truncatula
Medtr4g036455 Medicago truncatula
MELO3C017658.2 Cucumis melo
MELO3C029297.2 Cucumis melo
Migut.F00495 Erythranthe guttata
Migut.J00938 Erythranthe guttata
MSTRG.19469 Avicennia marina
MSTRG.8833 Avicennia marina
Nitab4.5_0000024g0160 Nicotiana tabacum
Nitab4.5_0002211g0090 Nicotiana tabacum
Nitab4.5_0002623g0040 Nicotiana tabacum
Nitab4.5_0003647g0070 Nicotiana tabacum
Nn3g20657 Nelumbo nucifera
Nn4g25055 Nelumbo nucifera
Nn5g29183 Nelumbo nucifera
Nn5g29184 Nelumbo nucifera
Nn6g31659 Nelumbo nucifera
Nn6g33887 Nelumbo nucifera
Oeu021699.1 Olea europaea
Os04g0394500 Oryza sativa ssp. japonica
Peaxi162Scf00167g00728 Petunia axillaris
Peaxi162Scf00724g00710 Petunia axillaris
PGR044G0393 Punica granatum
PGR142G2629 Punica granatum
PGSC0003DMG400007236 Solanum tuberosum
PGSC0003DMG400010931 Solanum tuberosum
PGSC0003DMG400040648 Solanum tuberosum
Phvul.003G132000 Phaseolus vulgaris
Phvul.011G006800 Phaseolus vulgaris
Potri.003G107300 Populus trichocarpa
Potri.005G126700 Populus trichocarpa
Potri.005G126802 Populus trichocarpa
Potri.006G143500 Populus trichocarpa
Pp3c2_15930 Physcomitrium patens
Pp3c2_15931 Physcomitrium patens
PRCOL_00006649 Prasinoderma coloniale
Prupe.2G275200 Prunus persica
Prupe.7G201300 Prunus persica
Psat3g167120 Pisum sativum
Psat6g143520 Pisum sativum
Psat6g143720 Pisum sativum
PSO210G5997 Papaver somniferum
PSO386G0256 Papaver somniferum
PSO675G8609 Papaver somniferum
PSO732G0495 Papaver somniferum
QL02p025702 Quercus lobata
QL11p000453 Quercus lobata
RcHm_v2.0_Chr1g0374021 Rosa chinensis
RcHm_v2.0_Chr2g0094511 Rosa chinensis
RcHm_v2.0_Chr2g0097261 Rosa chinensis
RcHm_v2.0_Chr3g0487921 Rosa chinensis
RcHm_v2.0_Chr4g0388121 Rosa chinensis
Rhsim01G0044200 Rhododendron simsii
Rhsim03G0165300 Rhododendron simsii
Rhsim03G0229300 Rhododendron simsii
Sabra03G0074100 Salix brachista
Sabra06G0112400 Salix brachista
SalBow6G2853 Salvia bowleyana
SalBow6G3192 Salvia bowleyana
Sc08g0008830 Simmondsia chinensis
Sc08g0009320 Simmondsia chinensis
Sc26g0000020 Simmondsia chinensis
Sed0019222 Sechium edule
Sed0019346 Sechium edule
SGA_v2.0_scaffold44G16557 Striga asiatica
SGA_v2.0_scaffold97G29141 Striga asiatica
SHI23798 Sapria himalayana
Solyc05g025650.3 Solanum lycopersicum
Solyc05g051620.3 Solanum lycopersicum
Sopen05g020390 Solanum pennellii
Sopen05g030070 Solanum pennellii
Sp6g33950 Schrenkiella parvula
Sp7g23200 Schrenkiella parvula
TAR352G0002 Trochodendron aralioides
TAR374G0149 Trochodendron aralioides
TAR636G3650 Trochodendron aralioides
THA.LOC104808893 Tarenaya hassleriana
THA.LOC104811532 Tarenaya hassleriana
Thecc.03G152800 Theobroma cacao
Thecc.09G079200 Theobroma cacao
Thhalv10002636m.g Eutrema salsugineum
Thhalv10014696m.g Eutrema salsugineum
Thhalv10025722m.g Eutrema salsugineum
TPR.G22330 Trifolium pratense
TPR.G3053 Trifolium pratense
TPR.G36477 Trifolium pratense
TPR.G3686 Trifolium pratense
TWI14G0682 Tripterygium wilfordii
TWI32G1203 Tripterygium wilfordii
TWI34G1862 Tripterygium wilfordii
unitig_52.g17767 Utricularia gibba
unitig_749.g14239 Utricularia gibba
vmacro07772 Vaccinium macrocarpon
vmacro22810 Vaccinium macrocarpon
VMungo0251G2131 Vigna mungo
VMungo1127G1746 Vigna mungo
VMungo1215G2359 Vigna mungo
Zm00001eb085100 Zea mays

User provided reference genes

Program Settings