Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p17240 Brassica napus
A10p32910 Brassica napus
Aa31LG1G12280 Aethionema arabicum
Aa31LG1G22090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2939 Anthoceros agrestis
Actinidia03013 Actinidia chinensis
Actinidia07097 Actinidia chinensis
Actinidia13842 Actinidia chinensis
Actinidia25652 Actinidia chinensis
Actinidia37280 Actinidia chinensis
Actinidia38235 Actinidia chinensis
Ah.10g033390 Amaranthus hybridus
AL6G12070 Arabidopsis lyrata
AL71U10040 Arabidopsis lyrata
AL8G36680 Arabidopsis lyrata
AL8G36710 Arabidopsis lyrata
Aqoxy2G01893 Aquilegia oxysepala
Aqoxy4G03161 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1K6ZHH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A77B5H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PDCB5X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z8TZMB Arachis hypogaea
AT5G02810 Arabidopsis thaliana
AT5G60100 Arabidopsis thaliana
ATR0594G076 Amborella trichopoda
Atru.chr3.3751 Acer truncatum
Atru.chr8.2529 Acer truncatum
Atru.chr8.2532 Acer truncatum
AUR62036007 Chenopodium quinoa
AUR62041615 Chenopodium quinoa
BcaB05g21867 Brassica carinata
BcaB05g22620 Brassica carinata
BcaC03g13043 Brassica carinata
BolC2t06067H Brassica oleracea
BolC9t58126H Brassica oleracea
BolC9t60118H Brassica oleracea
BraA02t04732Z Brassica rapa
BraA10t43808Z Brassica rapa
BraA10t45328Z Brassica rapa
C02p00690 Brassica napus
C09p52600 Brassica napus
C09p73840 Brassica napus
CAN.G128.133 Capsicum annuum
CAN.G172.6 Capsicum annuum
CAN.G172.7 Capsicum annuum
CAN.G933.14 Capsicum annuum
CARHR153770 Cardamine hirsuta
CARHR210520 Cardamine hirsuta
CARHR273730 Cardamine hirsuta
Carub.0006s0161 Capsella rubella
Carub.0008s2066 Capsella rubella
Carub.0008s2080 Capsella rubella
Ca_02306_v3 Cicer arietinum L.
Ca_02307_v3 Cicer arietinum L.
Ca_19220_v3 Cicer arietinum L.
Cc06_g03460 Coffea canephora
Cc09_g02330 Coffea canephora
CDE02G1366 Ceratophyllum demersum
CDE02G3056 Ceratophyllum demersum
CDE09G1025 Ceratophyllum demersum
Cfa011399 Carpinus fangiana
Ciclev10011108m.g Citrus clementina
Ciclev10027794m.g Citrus clementina
Ciclev10030911m.g Citrus clementina
Ciclev10033433m.g Citrus clementina
CiPaw.01G278200 Carya illinoinensis
CiPaw.14G075300 Carya illinoinensis
ClCG04G008730 Citrullus lanatus
COL.COLO4_08205 Corchorus olitorius
COL.COLO4_08206 Corchorus olitorius
COL.COLO4_10285 Corchorus olitorius
COL.COLO4_10286 Corchorus olitorius
COL.COLO4_18397 Corchorus olitorius
Cpa.g.sc1.291 Carica papaya
Cpa.g.sc139.32 Carica papaya
CsaV3_4G024430 Cucumis sativus L.
CSS0001864 Camellia sinensis var. sinensis
CSS0025745 Camellia sinensis var. sinensis
CSS0048222 Camellia sinensis var. sinensis
DCAR_014956 Daucus carota
DCAR_015255 Daucus carota
DCAR_017720 Daucus carota
DCAR_032204 Daucus carota
Dinv25933 Davidia involucrata
Dinv31378 Davidia involucrata
Dinv35692 Davidia involucrata
Dinv35693 Davidia involucrata
Duzib093G2124 Durio zibethinus
Duzib106G0593 Durio zibethinus
Duzib114G0232 Durio zibethinus
Duzib128G1496 Durio zibethinus
Duzib128G1499 Durio zibethinus
Duzib168G0521 Durio zibethinus
ECA233G3044 Erigeron canadensis
ECA238G0153 Erigeron canadensis
ECA238G4206 Erigeron canadensis
EL10Ac2g03535 Beta vulgaris
EL10Ac7g17317 Beta vulgaris
Eucgr.G02787 Eucalyptus grandis
Eucgr.J02111 Eucalyptus grandis
FAN02G3803 Fragaria x ananassa
FAN05G2381 Fragaria x ananassa
FAN09G3606 Fragaria x ananassa
FAN14G0294 Fragaria x ananassa
FvH4_6g15060 Fragaria vesca
Glyma.10G048100 Glycine max
Glyma.11G148362 Glycine max
Glyma.12G073900 Glycine max
Glyma.13G096925 Glycine max
Glyma.13G135900 Glycine max
Gohir.A05G099900 Gossypium hirsutum
Gohir.A05G343600 Gossypium hirsutum
Gohir.A09G160600 Gossypium hirsutum
Gohir.A11G325400 Gossypium hirsutum
Gohir.A11G325450 Gossypium hirsutum
Gohir.D04G082000 Gossypium hirsutum
Gohir.D05G099700 Gossypium hirsutum
Gohir.D09G156300 Gossypium hirsutum
Gohir.D11G344400 Gossypium hirsutum
Gorai.006G177800 Gossypium raimondii
Gorai.007G374800 Gossypium raimondii
Gorai.009G103700 Gossypium raimondii
Gorai.012G092600 Gossypium raimondii
GSVIVG01025087001 Vitis vinifera
GSVIVG01025088001 Vitis vinifera
GSVIVG01025556001 Vitis vinifera
GSVIVG01032644001 Vitis vinifera
HanXRQChr01g0027331 Helianthus annuus
HanXRQChr03g0067491 Helianthus annuus
HanXRQChr07g0200931 Helianthus annuus
HanXRQChr08g0219331 Helianthus annuus
HanXRQChr12g0370381 Helianthus annuus
HanXRQChr14g0453441 Helianthus annuus
HanXRQChr14g0456051 Helianthus annuus
HanXRQChr14g0460851 Helianthus annuus
HanXRQChr15g0465341 Helianthus annuus
Haze_16956 Corylus avellana
Haze_23970 Corylus avellana
Hma1.2p1_0207F.1_g088060 Hydrangea macrophylla
Hma1.2p1_0348F.1_g131870 Hydrangea macrophylla
Hma1.2p1_0778F.1_g216670 Hydrangea macrophylla
Hma1.2p1_0786F.1_g217790 Hydrangea macrophylla
Hma1.2p1_0861F.1_g229620 Hydrangea macrophylla
Hma1.2p1_2042F.1_g312250 Hydrangea macrophylla
HPP92_013904 Vanilla planifolia
Hund19289 Selenicereus undatus
Lalb_Chr01g0004011 Lupinus albus
Lalb_Chr02g0153571 Lupinus albus
Lj1A928T59 Lonicera japonica
Lj1A928T60 Lonicera japonica
Lj2A105T66 Lonicera japonica
Lj2A105T68 Lonicera japonica
Lj3C977T14 Lonicera japonica
Lj3g0016171 Lotus japonicus
Lj5g0020233 Lotus japonicus
Lj8A93G66 Lonicera japonica
Lsat_1_v5_gn_2_110060 Lactuca sativa
Lsat_1_v5_gn_2_115441 Lactuca sativa
Lsat_1_v5_gn_8_21260 Lactuca sativa
Manes.04G027400 Manihot esculenta
Manes.07G105100 Manihot esculenta
Manes.08G001600 Manihot esculenta
Mapoly0122s0007 Marchantia polymorpha
MBI14_g17794_MAGBIO Magnolia biondii
MD01G1114400 Malus domestica
MD04G1113200 Malus domestica
MD07G1182300 Malus domestica
MD07G1182500 Malus domestica
MD12G1128600 Malus domestica
Medtr1g067110 Medicago truncatula
Medtr4g061360 Medicago truncatula
MELO3C003075.2 Cucumis melo
Migut.J00402 Erythranthe guttata
Migut.L01650 Erythranthe guttata
MSTRG.19127 Avicennia marina
MSTRG.5711 Avicennia marina
Nitab4.5_0000575g0010 Nicotiana tabacum
Nitab4.5_0000754g0020 Nicotiana tabacum
Nitab4.5_0001248g0010 Nicotiana tabacum
Nitab4.5_0007768g0020 Nicotiana tabacum
Nn2g10604 Nelumbo nucifera
Nn2g12954 Nelumbo nucifera
Oeu016499.1 Olea europaea
Oeu018421.1 Olea europaea
Oeu027142.1 Olea europaea
Oeu033840.4 Olea europaea
Oeu055060.1 Olea europaea
Oeu060078.1 Olea europaea
Os03g0284100 Oryza sativa ssp. japonica
Os07g0695100 Oryza sativa ssp. japonica
Peaxi162Scf00146g01328 Petunia axillaris
Peaxi162Scf01024g00007 Petunia axillaris
Peaxi162Scf01024g00009 Petunia axillaris
Peaxi162Scf01517g00133 Petunia axillaris
PGR004G0181 Punica granatum
PGR142G1433 Punica granatum
Phvul.007G162500 Phaseolus vulgaris
Phvul.011G070600 Phaseolus vulgaris
Phvul.011G070700 Phaseolus vulgaris
Potri.008G046200 Populus trichocarpa
Potri.010G215200 Populus trichocarpa
Pp3c16_18460 Physcomitrium patens
Pp3c16_18610 Physcomitrium patens
Pp3c25_4920 Physcomitrium patens
Pp3c25_5040 Physcomitrium patens
Prupe.6G244200 Prunus persica
Psat6g124840 Pisum sativum
Psat7g221720 Pisum sativum
PSO384G3416 Papaver somniferum
PSO713G0030 Papaver somniferum
QL01p035484 Quercus lobata
QL07p045617 Quercus lobata
QL07p045626 Quercus lobata
QL08p057302 Quercus lobata
QL08p057307 Quercus lobata
RcHm_v2.0_Chr1g0364431 Rosa chinensis
RcHm_v2.0_Chr3g0468241 Rosa chinensis
Rhsim09G0155000 Rhododendron simsii
Sabra08G0032500 Salix brachista
Sabra10G0166300 Salix brachista
SalBow3G1955 Salvia bowleyana
Sc01g0003670 Simmondsia chinensis
Sc06g0001820 Simmondsia chinensis
Sed0014628 Sechium edule
Sed0021728 Sechium edule
SEGI_00284 Sequoiadendron giganteum
SEGI_03174 Sequoiadendron giganteum
SEGI_08655 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33876 Striga asiatica
SGA_v2.0_scaffold75G24892 Striga asiatica
Solyc04g049670.4 Solanum lycopersicum
Solyc04g049680.2 Solanum lycopersicum
Solyc10g086000.3 Solanum lycopersicum
Sopen04g019880 Solanum pennellii
Sopen10g035370 Solanum pennellii
Sp6g21750 Schrenkiella parvula
Sp6g39770 Schrenkiella parvula
TAR369G0307 Trochodendron aralioides
TAR623G1705 Trochodendron aralioides
TAR633G2656 Trochodendron aralioides
THA.LOC104799475 Tarenaya hassleriana
THA.LOC104816313 Tarenaya hassleriana
THA.LOC104824243 Tarenaya hassleriana
THA.LOC104826990 Tarenaya hassleriana
Thecc.05G051700 Theobroma cacao
Thecc.09G335000 Theobroma cacao
Thecc.10G064700 Theobroma cacao
Thhalv10012789m.g Eutrema salsugineum
TPR.G2964 Trifolium pratense
TWI31G0136 Tripterygium wilfordii
TWI79G0853 Tripterygium wilfordii
vmacro07098 Vaccinium macrocarpon
VMungo0720G0913 Vigna mungo
Zm00001eb112080 Zea mays
Zm00001eb331630 Zea mays
Zm00001eb397240 Zea mays

User provided reference genes

Program Settings