Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p04070 Brassica napus
A02p35610 Brassica napus
A07p04760 Brassica napus
A09p03510 Brassica napus
Aa31LG2G16270 Aethionema arabicum
Aa31LG2G16280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.49 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1962 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1965 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1975 Anthoceros agrestis
Actinidia00493 Actinidia chinensis
Actinidia12987 Actinidia chinensis
Actinidia15290 Actinidia chinensis
Actinidia22575 Actinidia chinensis
Ah.11g043180 Amaranthus hybridus
AL3G52140 Arabidopsis lyrata
AL5G17150 Arabidopsis lyrata
AL5G17160 Arabidopsis lyrata
AL7G16900 Arabidopsis lyrata
Aqoxy5G01731 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8MWJ6S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PF3UPC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QPH9KH Arachis hypogaea
AT2G16090 Arabidopsis thaliana
AT3G27710 Arabidopsis thaliana
AT3G27720 Arabidopsis thaliana
AT4G34370 Arabidopsis thaliana
ATR0733G206 Amborella trichopoda
Atru.chr13.568 Acer truncatum
Atru.chr5.2921 Acer truncatum
AUR62011375 Chenopodium quinoa
AUR62016683 Chenopodium quinoa
AUR62016684 Chenopodium quinoa
AUR62033862 Chenopodium quinoa
BcaB04g19448 Brassica carinata
BcaB07g30147 Brassica carinata
BcaC03g17482 Brassica carinata
BcaC04g23891 Brassica carinata
BcaC06g36114 Brassica carinata
BcaNung05031 Brassica carinata
BolC1t00428H Brassica oleracea
BolC2t11506H Brassica oleracea
BolC7t41184H Brassica oleracea
BolC9t53293H Brassica oleracea
BraA01t00395Z Brassica rapa
BraA02t08563Z Brassica rapa
BraA07t28263Z Brassica rapa
BraA09t35989Z Brassica rapa
C01p04430 Brassica napus
C02p54440 Brassica napus
C07p07630 Brassica napus
C09p03730 Brassica napus
CAN.G1002.7 Capsicum annuum
CAN.G322.103 Capsicum annuum
CAN.G371.118 Capsicum annuum
CANSAT01G2922 Cannabis sativa
CANSAT25G2071 Cannabis sativa
CANSAT56G2073 Cannabis sativa
CARHR149180 Cardamine hirsuta
CARHR242400 Cardamine hirsuta
CARHR289240 Cardamine hirsuta
Carub.0005s0626 Capsella rubella
Carub.0005s0627 Capsella rubella
Carub.0007s0596 Capsella rubella
Ca_20839_v3 Cicer arietinum L.
CBR_g3160 Chara braunii
Cc02_g17990 Coffea canephora
Cc10_g03520 Coffea canephora
Cc10_g10220 Coffea canephora
Cc10_g10230 Coffea canephora
CDE02G2846 Ceratophyllum demersum
CDE04G1403 Ceratophyllum demersum
CDE04G1954 Ceratophyllum demersum
CDE06G1578 Ceratophyllum demersum
Cfa004970 Carpinus fangiana
Cfa018453 Carpinus fangiana
Ciclev10000795m.g Citrus clementina
Ciclev10003455m.g Citrus clementina
Ciclev10028072m.g Citrus clementina
CiPaw.05G060400 Carya illinoinensis
CiPaw.06G138200 Carya illinoinensis
ClCG00G002980 Citrullus lanatus
ClCG09G017840 Citrullus lanatus
COL.COLO4_17798 Corchorus olitorius
Cpa.g.sc62.101 Carica papaya
Cre17.g721950 Chlamydomonas reinhardtii
CsaV3_2G014450 Cucumis sativus L.
CSS0003037 Camellia sinensis var. sinensis
CSS0009824 Camellia sinensis var. sinensis
CSS0014904 Camellia sinensis var. sinensis
CSS0033377 Camellia sinensis var. sinensis
DCAR_000320 Daucus carota
DCAR_022089 Daucus carota
DCAR_029000 Daucus carota
Dinv23562 Davidia involucrata
Dinv36029 Davidia involucrata
Dinv39369 Davidia involucrata
Dinv42098 Davidia involucrata
Duzib052G0459 Durio zibethinus
Duzib093G1626 Durio zibethinus
Duzib116G0484 Durio zibethinus
Duzib132G0892 Durio zibethinus
Duzib248G1087 Durio zibethinus
ECA240G1058 Erigeron canadensis
ECA246G4301 Erigeron canadensis
ECA247G3434 Erigeron canadensis
EL10Ac1g01789 Beta vulgaris
Eucgr.I01239 Eucalyptus grandis
FAN15G0270 Fragaria x ananassa
FAN15G2100 Fragaria x ananassa
FAN15G3486 Fragaria x ananassa
FAN20G2632 Fragaria x ananassa
FAN24G0287 Fragaria x ananassa
FAN24G1300 Fragaria x ananassa
FAN27G1686 Fragaria x ananassa
FAN27G2797 Fragaria x ananassa
FAN27G3076 Fragaria x ananassa
FAN27G3231 Fragaria x ananassa
FvH4_2g07840 Fragaria vesca
FvH4_2g17740 Fragaria vesca
FvH4_2g40440 Fragaria vesca
Glyma.11G121300 Glycine max
Glyma.12G046400 Glycine max
Gohir.A03G213600 Gossypium hirsutum
Gohir.A04G128800 Gossypium hirsutum
Gohir.D02G235100 Gossypium hirsutum
Gohir.D04G173900 Gossypium hirsutum
Gorai.005G263200 Gossypium raimondii
Gorai.012G163300 Gossypium raimondii
GSVIVG01009627001 Vitis vinifera
GSVIVG01031904001 Vitis vinifera
HanXRQChr03g0071071 Helianthus annuus
HanXRQChr05g0151991 Helianthus annuus
Haze_02426 Corylus avellana
Haze_17613 Corylus avellana
Hma1.2p1_0260F.1_g104340 Hydrangea macrophylla
Hma1.2p1_0584F.1_g183480 Hydrangea macrophylla
Hma1.2p1_1353F.1_g277660 Hydrangea macrophylla
Hma1.2p1_2724F.1_g327520 Hydrangea macrophylla
HPP92_007806 Vanilla planifolia
HPP92_007807 Vanilla planifolia
Hund17641 Selenicereus undatus
Lalb_Chr01g0002801 Lupinus albus
Lalb_Chr19g0138531 Lupinus albus
Lj3g0002762 Lotus japonicus
Lj5C202T15 Lonicera japonica
Lj9A697T52 Lonicera japonica
Lj9C365G18 Lonicera japonica
Lj9C697T9 Lonicera japonica
Lsat_1_v5_gn_6_113180 Lactuca sativa
Lsat_1_v5_gn_9_109280 Lactuca sativa
Manes.15G147400 Manihot esculenta
Manes.17G098600 Manihot esculenta
Manes.18G031000 Manihot esculenta
Mapoly0082s0047 Marchantia polymorpha
MBI16_g10971_MAGBIO Magnolia biondii
MBI16_g13159_MAGBIO Magnolia biondii
MD00G1039300 Malus domestica
MD05G1071700 Malus domestica
MD08G1037700 Malus domestica
MD10G1083500 Malus domestica
Medtr4g068940 Medicago truncatula
MELO3C021950.2 Cucumis melo
Migut.B00276 Erythranthe guttata
Migut.C00669 Erythranthe guttata
Migut.N01214 Erythranthe guttata
MSTRG.16788 Avicennia marina
MSTRG.20110 Avicennia marina
Nitab4.5_0000110g0110 Nicotiana tabacum
Nitab4.5_0000453g0030 Nicotiana tabacum
Nitab4.5_0000790g0080 Nicotiana tabacum
Nitab4.5_0000790g0090 Nicotiana tabacum
Nitab4.5_0003816g0040 Nicotiana tabacum
Nitab4.5_0004280g0100 Nicotiana tabacum
Nitab4.5_0012474g0020 Nicotiana tabacum
Nn1g05131 Nelumbo nucifera
Nn5g29467 Nelumbo nucifera
Oeu013837.2 Olea europaea
Oeu020773.1 Olea europaea
Oeu020774.1 Olea europaea
Oeu034084.1 Olea europaea
Os03g0233500 Oryza sativa ssp. japonica
Os03g0625800 Oryza sativa ssp. japonica
Os03g0625933 Oryza sativa ssp. japonica
Os03g0626100 Oryza sativa ssp. japonica
Peaxi162Scf00016g01128 Petunia axillaris
Peaxi162Scf00016g01129 Petunia axillaris
Peaxi162Scf00064g00331 Petunia axillaris
Peaxi162Scf02754g00013 Petunia axillaris
PGR042G0626 Punica granatum
PGR042G2397 Punica granatum
PGSC0003DMG400015452 Solanum tuberosum
PGSC0003DMG400016884 Solanum tuberosum
PGSC0003DMG400025178 Solanum tuberosum
Phvul.011G048200 Phaseolus vulgaris
Potri.009G111200 Populus trichocarpa
Potri.T124304 Populus trichocarpa
Pp3c26_11830 Physcomitrium patens
Pp3c4_29960 Physcomitrium patens
PRCOL_00006852 Prasinoderma coloniale
Prupe.1G384900 Prunus persica
Prupe.8G106500 Prunus persica
Psat7g185480 Pisum sativum
PSO170G6657 Papaver somniferum
PSO541G2629 Papaver somniferum
PSO675G7997 Papaver somniferum
PSO700G0387 Papaver somniferum
QL02p007199 Quercus lobata
QL11p040084 Quercus lobata
RcHm_v2.0_Chr6g0262251 Rosa chinensis
RcHm_v2.0_Chr6g0300291 Rosa chinensis
Rhsim05G0077400 Rhododendron simsii
Rhsim06G0038500 Rhododendron simsii
Rhsim06G0105700 Rhododendron simsii
Rhsim11G0172600 Rhododendron simsii
Sabra09G0084800 Salix brachista
SalBow3G2370 Salvia bowleyana
SalBow6G1486 Salvia bowleyana
Sc15g0006700 Simmondsia chinensis
Sed0012967 Sechium edule
Sed0018843 Sechium edule
SEGI_09138 Sequoiadendron giganteum
SGA_v2.0_scaffold55G19812 Striga asiatica
SGA_v2.0_scaffold58G20580 Striga asiatica
SMO270G0102 Selaginella moellendorffii
Solyc01g109280.3 Solanum lycopersicum
Solyc04g079780.4 Solanum lycopersicum
Solyc12g089000.2 Solanum lycopersicum
Sopen01g051460 Solanum pennellii
Sopen04g033360 Solanum pennellii
Sopen12g030900 Solanum pennellii
Sp2g16830 Schrenkiella parvula
Sp3g29350 Schrenkiella parvula
Sp7g32160 Schrenkiella parvula
TAR381G0018 Trochodendron aralioides
TAR625G0370 Trochodendron aralioides
THA.LOC104804362 Tarenaya hassleriana
THA.LOC104807333 Tarenaya hassleriana
Thecc.02G031500 Theobroma cacao
Thecc.08G020500 Theobroma cacao
Thhalv10005453m.g Eutrema salsugineum
Thhalv10022996m.g Eutrema salsugineum
Thhalv10024727m.g Eutrema salsugineum
TPR.G28048 Trifolium pratense
TWI12G1168 Tripterygium wilfordii
TWI31G0588 Tripterygium wilfordii
TWI56G0111 Tripterygium wilfordii
TWI79G0482 Tripterygium wilfordii
unitig_744.g24244 Utricularia gibba
vmacro02150 Vaccinium macrocarpon
vmacro19442 Vaccinium macrocarpon
vmacro20558 Vaccinium macrocarpon
vmacro21600 Vaccinium macrocarpon
vmacro21601 Vaccinium macrocarpon
vmacro21602 Vaccinium macrocarpon
VMungo1127G1515 Vigna mungo
Zm00001eb009370 Zea mays
Zm00001eb218920 Zea mays
Zm00001eb399570 Zea mays

User provided reference genes

Program Settings