Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p09380 Brassica napus
A10p32450 Brassica napus
Aa31LG5G21570 Aethionema arabicum
Aa31sc108G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1780 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.226 Anthoceros agrestis
Actinidia10394 Actinidia chinensis
Actinidia15493 Actinidia chinensis
Actinidia17043 Actinidia chinensis
Actinidia25633 Actinidia chinensis
Actinidia31282 Actinidia chinensis
Actinidia34352 Actinidia chinensis
Ah.00g000830 Amaranthus hybridus
Ah.08g210820 Amaranthus hybridus
AL4G32550 Arabidopsis lyrata
AL6G13160 Arabidopsis lyrata
Aqoxy4G02852 Aquilegia oxysepala
Aqoxy6G01706 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7NA3QC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9WH7JT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CNB6AU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D08W0E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GBK6AY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I6CRUS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LVP8WS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M043T1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NQP1ZX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PR5A78 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TM819Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TU8IY1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X7DEK6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZHBG52 Arachis hypogaea
AT2G36390 Arabidopsis thaliana
AT5G03650 Arabidopsis thaliana
ATR0661G525 Amborella trichopoda
ATR0820G139 Amborella trichopoda
Atru.chr13.139 Acer truncatum
Atru.chr8.1612 Acer truncatum
AUR62033546 Chenopodium quinoa
AUR62036860 Chenopodium quinoa
AUR62040796 Chenopodium quinoa
AUR62043105 Chenopodium quinoa
BcaB02g09356 Brassica carinata
BcaC02g07601 Brassica carinata
BcaC02g11755 Brassica carinata
BcaC06g32073 Brassica carinata
BolC4t22818H Brassica oleracea
BolC9t60062H Brassica oleracea
BraA05t19897Z Brassica rapa
BraA10t45285Z Brassica rapa
C04p11690 Brassica napus
C09p73270 Brassica napus
CAN.G311.118 Capsicum annuum
CAN.G824.19 Capsicum annuum
CANSAT25G0108 Cannabis sativa
CANSAT51G0004 Cannabis sativa
CARHR130690 Cardamine hirsuta
CARHR209650 Cardamine hirsuta
Carub.0004s1819 Capsella rubella
Carub.0006s0256 Capsella rubella
Ca_08974_v3 Cicer arietinum L.
Ca_11766_v3 Cicer arietinum L.
Ca_15431_v3 Cicer arietinum L.
Ca_15456_v3 Cicer arietinum L.
CBR_g3299 Chara braunii
CBR_g47092 Chara braunii
Cc06_g05400 Coffea canephora
Cc10_g00640 Coffea canephora
CDE02G0218 Ceratophyllum demersum
CDE06G0699 Ceratophyllum demersum
Cfa014084 Carpinus fangiana
Cfa016560 Carpinus fangiana
Cfa025650 Carpinus fangiana
Ciclev10000256m.g Citrus clementina
Ciclev10011063m.g Citrus clementina
CiPaw.07G138400 Carya illinoinensis
CiPaw.09G009900 Carya illinoinensis
CiPaw.10G006600 Carya illinoinensis
ClCG08G009400 Citrullus lanatus
ClCG10G019210 Citrullus lanatus
COL.COLO4_05220 Corchorus olitorius
COL.COLO4_29795 Corchorus olitorius
Cpa.g.sc5.62 Carica papaya
Cpa.g.sc801.2 Carica papaya
Cre06.g270100 Chlamydomonas reinhardtii
Cre06.g289850 Chlamydomonas reinhardtii
Cre10.g444700 Chlamydomonas reinhardtii
CsaV3_3G036980 Cucumis sativus L.
CsaV3_6G031530 Cucumis sativus L.
CSS0016120 Camellia sinensis var. sinensis
CSS0018649 Camellia sinensis var. sinensis
DCAR_009140 Daucus carota
DCAR_013916 Daucus carota
DCAR_016772 Daucus carota
Dinv05530 Davidia involucrata
Dinv19842 Davidia involucrata
Dinv21240 Davidia involucrata
Dinv31651 Davidia involucrata
Dinv31946 Davidia involucrata
Duzib093G0823 Durio zibethinus
Duzib093G1181 Durio zibethinus
Duzib106G0218 Durio zibethinus
Duzib128G0077 Durio zibethinus
ECA233G1445 Erigeron canadensis
ECA238G3493 Erigeron canadensis
EL10Ac1g01952 Beta vulgaris
EL10Ac7g16968 Beta vulgaris
Eucgr.A01533 Eucalyptus grandis
Eucgr.F01770 Eucalyptus grandis
FAN02G2109 Fragaria x ananassa
FAN05G1060 Fragaria x ananassa
FAN05G5104 Fragaria x ananassa
FAN09G1654 Fragaria x ananassa
FAN14G4905 Fragaria x ananassa
FAN15G2765 Fragaria x ananassa
FAN20G0725 Fragaria x ananassa
FAN27G2210 Fragaria x ananassa
FvH4_2g37381 Fragaria vesca
FvH4_2g37410 Fragaria vesca
FvH4_6g18120 Fragaria vesca
Glyma.03G192300 Glycine max
Glyma.04G017700 Glycine max
Glyma.19G192800 Glycine max
Gohir.A01G207900 Gossypium hirsutum
Gohir.A02G084500 Gossypium hirsutum
Gohir.A04G065400 Gossypium hirsutum
Gohir.D01G197300 Gossypium hirsutum
Gohir.D02G100400 Gossypium hirsutum
Gohir.D04G103000 Gossypium hirsutum
Gorai.002G241400 Gossypium raimondii
Gorai.005G113800 Gossypium raimondii
Gorai.009G406400 Gossypium raimondii
GSVIVG01008673001 Vitis vinifera
GSVIVG01033801001 Vitis vinifera
HanXRQChr06g0181661 Helianthus annuus
HanXRQChr13g0409691 Helianthus annuus
HanXRQChr13g0409701 Helianthus annuus
Haze_19562 Corylus avellana
Haze_22785 Corylus avellana
Hma1.2p1_0507F.1_g168550 Hydrangea macrophylla
HPP92_007772 Vanilla planifolia
HPP92_007794 Vanilla planifolia
Hund05103 Selenicereus undatus
Hund19973 Selenicereus undatus
Hund19974 Selenicereus undatus
Lalb_Chr11g0061611 Lupinus albus
Lalb_Chr20g0112101 Lupinus albus
Lalb_Chr25g0288581 Lupinus albus
Lj1g0001358 Lotus japonicus
Lj1g0023484 Lotus japonicus
Lj2A131T22 Lonicera japonica
Lj2A132G53 Lonicera japonica
Lj3A1002T55 Lonicera japonica
Lj3A1002T56 Lonicera japonica
Lj4C10G12 Lonicera japonica
Lsat_1_v5_gn_2_24180 Lactuca sativa
Lsat_1_v5_gn_8_26220 Lactuca sativa
Manes.05G133800 Manihot esculenta
Manes.08G022400 Manihot esculenta
Manes.09G058676 Manihot esculenta
Mapoly0009s0207 Marchantia polymorpha
MBI08_g24272_MAGBIO Magnolia biondii
MCO01G713 Micromonas commoda
MCO03G250 Micromonas commoda
MCO14G285 Micromonas commoda
MD08G1002300 Malus domestica
MD12G1020600 Malus domestica
MD14G1017700 Malus domestica
Medtr3g115340 Medicago truncatula
Medtr7g104080 Medicago truncatula
MELO3C009445.2 Cucumis melo
MELO3C026536.2 Cucumis melo
Migut.C00387 Erythranthe guttata
Migut.J00975 Erythranthe guttata
MSTRG.19239 Avicennia marina
MSTRG.5817 Avicennia marina
MSTRG.979 Avicennia marina
Nitab4.5_0000588g0040 Nicotiana tabacum
Nitab4.5_0003541g0010 Nicotiana tabacum
Nitab4.5_0003541g0040 Nicotiana tabacum
Nitab4.5_0004686g0020 Nicotiana tabacum
Nn5g30949 Nelumbo nucifera
Nn6g35010 Nelumbo nucifera
Oeu009904.4 Olea europaea
Os02g0528200 Oryza sativa ssp. japonica
Os04g0409200 Oryza sativa ssp. japonica
Os06g0726400 Oryza sativa ssp. japonica
Peaxi162Scf00068g00019 Petunia axillaris
Peaxi162Scf00893g00013 Petunia axillaris
PGR083G0741 Punica granatum
PGSC0003DMG400009981 Solanum tuberosum
Phvul.001G187600 Phaseolus vulgaris
Phvul.009G011000 Phaseolus vulgaris
Potri.005G251000 Populus trichocarpa
Potri.006G115100 Populus trichocarpa
Pp3c16_13360 Physcomitrium patens
Pp3c27_2570 Physcomitrium patens
Pp3c5_8810 Physcomitrium patens
PRCOL_00006156 Prasinoderma coloniale
PRCOL_00006280 Prasinoderma coloniale
PRCOL_00006967 Prasinoderma coloniale
Prupe.1G354000 Prunus persica
Prupe.7G115400 Prunus persica
Psat0s2670g0080 Pisum sativum
Psat3g034640 Pisum sativum
PSO339G5175 Papaver somniferum
PSO384G3813 Papaver somniferum
PSO541G3094 Papaver somniferum
PSO675G0174 Papaver somniferum
QL02p014252 Quercus lobata
QL07p040002 Quercus lobata
RcHm_v2.0_Chr3g0472421 Rosa chinensis
RcHm_v2.0_Chr6g0304311 Rosa chinensis
Rhsim04G0134300 Rhododendron simsii
Rhsim06G0006900 Rhododendron simsii
Sabra05G0194100 Salix brachista
Sabra06G0090000 Salix brachista
SalBow3G2646 Salvia bowleyana
SalBow7G2313 Salvia bowleyana
Sc02g0001080 Simmondsia chinensis
Sc26g0004640 Simmondsia chinensis
Sed0006917 Sechium edule
Sed0027114 Sechium edule
SEGI_11034 Sequoiadendron giganteum
SEGI_15665 Sequoiadendron giganteum
SEGI_16586 Sequoiadendron giganteum
SEGI_17045 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06771 Striga asiatica
SGA_v2.0_scaffold75G24783 Striga asiatica
SGA_v2.0_scaffold82G26249 Striga asiatica
SMO367G0192 Selaginella moellendorffii
SMO367G1299 Selaginella moellendorffii
Solyc04g082400.3 Solanum lycopersicum
Sopen04g036000 Solanum pennellii
Sopen09g003920 Solanum pennellii
Sp4g18680 Schrenkiella parvula
Sp6g39090 Schrenkiella parvula
TAR623G0202 Trochodendron aralioides
TAR628G1023 Trochodendron aralioides
THA.LOC104816366 Tarenaya hassleriana
THA.LOC104825424 Tarenaya hassleriana
THA.LOC104826928 Tarenaya hassleriana
Thecc.05G083400 Theobroma cacao
Thecc.08G059600 Theobroma cacao
Thhalv10012679m.g Eutrema salsugineum
Thhalv10016249m.g Eutrema salsugineum
TPR.G19537 Trifolium pratense
TPR.G38178 Trifolium pratense
TWI12G1367 Tripterygium wilfordii
TWI77G0257 Tripterygium wilfordii
unitig_30.g34055 Utricularia gibba
unitig_30.g34056 Utricularia gibba
unitig_32.g11165 Utricularia gibba
unitig_32.g11166 Utricularia gibba
unitig_749.g14292 Utricularia gibba
vmacro08826 Vaccinium macrocarpon
vmacro21808 Vaccinium macrocarpon
VMungo1309G1980 Vigna mungo
VMungo1383G2218 Vigna mungo
Zm00001eb084160 Zea mays
Zm00001eb228530 Zea mays
Zm00001eb242610 Zea mays

User provided reference genes

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