Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p03060 Brassica napus
A03p63660 Brassica napus
A06p16710 Brassica napus
A07p15510 Brassica napus
A08p21840 Brassica napus
Aa31LG6G12520 Aethionema arabicum
Aa31LG7G4900 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2539 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.2847 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1253 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5970 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5108 Anthoceros agrestis
Actinidia17357 Actinidia chinensis
Actinidia22896 Actinidia chinensis
Ah.03g142810 Amaranthus hybridus
AL1G33690 Arabidopsis lyrata
AL1G33700 Arabidopsis lyrata
AL7G15610 Arabidopsis lyrata
Aqoxy5G01008 Aquilegia oxysepala
Aqoxy6G01614 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1P3WKU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FRQ615 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SMSJ3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UQJP0C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V10AMR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZXR7VM Arachis hypogaea
AT1G20700 Arabidopsis thaliana
AT1G20710 Arabidopsis thaliana
AT4G35550 Arabidopsis thaliana
ATR0807G226 Amborella trichopoda
Atru.chr13.116 Acer truncatum
Atru.chr3.131 Acer truncatum
AUR62002048 Chenopodium quinoa
AUR62003747 Chenopodium quinoa
BcaB03g12417 Brassica carinata
BcaB03g14304 Brassica carinata
BcaB07g32069 Brassica carinata
BcaC01g00500 Brassica carinata
BcaC02g07334 Brassica carinata
BcaC06g34832 Brassica carinata
BcaNung00582 Brassica carinata
BcaNung03638 Brassica carinata
BcaNung03639 Brassica carinata
BolC1t00328H Brassica oleracea
BolC3t20317H Brassica oleracea
BolC4t28311H Brassica oleracea
BolC7t42825H Brassica oleracea
BolC7t46549H Brassica oleracea
BraA01t00290Z Brassica rapa
BraA03t15437Z Brassica rapa
BraA07t29292Z Brassica rapa
BraA08t34137Z Brassica rapa
C01p03410 Brassica napus
C03p80720 Brassica napus
C04p68060 Brassica napus
C05p19310 Brassica napus
C07p22850 Brassica napus
C07p61230 Brassica napus
CAN.G1238.13 Capsicum annuum
CANSAT25G1629 Cannabis sativa
CANSAT25G2761 Cannabis sativa
CARHR021150 Cardamine hirsuta
CARHR021160 Cardamine hirsuta
CARHR243890 Cardamine hirsuta
Carub.0001s2017 Capsella rubella
Carub.0001s2018 Capsella rubella
Carub.0007s0477 Capsella rubella
Ca_07196_v3 Cicer arietinum L.
Ca_07220_v3 Cicer arietinum L.
Ca_07222_v3 Cicer arietinum L.
Ca_11291_v3 Cicer arietinum L.
Ca_15405_v3 Cicer arietinum L.
Ca_29884_v3 Cicer arietinum L.
Cc04_g10680 Coffea canephora
Cc07_g11890 Coffea canephora
CDE05G2417 Ceratophyllum demersum
Cfa007080 Carpinus fangiana
Ciclev10002354m.g Citrus clementina
Ciclev10026199m.g Citrus clementina
CiPaw.07G002500 Carya illinoinensis
CiPaw.08G181800 Carya illinoinensis
ClCG10G000300 Citrullus lanatus
ClCG11G018800 Citrullus lanatus
COL.COLO4_07208 Corchorus olitorius
COL.COLO4_22552 Corchorus olitorius
Cpa.g.sc26.173 Carica papaya
Cpa.g.sc6.368 Carica papaya
CsaV3_3G000330 Cucumis sativus L.
CsaV3_4G037370 Cucumis sativus L.
CSS0007552 Camellia sinensis var. sinensis
CSS0008207 Camellia sinensis var. sinensis
CSS0012433 Camellia sinensis var. sinensis
CSS0013702 Camellia sinensis var. sinensis
CSS0014760 Camellia sinensis var. sinensis
CSS0015703 Camellia sinensis var. sinensis
CSS0028709 Camellia sinensis var. sinensis
CSS0046724 Camellia sinensis var. sinensis
DCAR_014309 Daucus carota
DCAR_026401 Daucus carota
Dinv08161 Davidia involucrata
Dinv31960 Davidia involucrata
Dinv40190 Davidia involucrata
Duzib093G0496 Durio zibethinus
Duzib147G0473 Durio zibethinus
Duzib187G1488 Durio zibethinus
ECA232G1208 Erigeron canadensis
ECA246G3648 Erigeron canadensis
EL10Ac6g15053 Beta vulgaris
Eucgr.I02222 Eucalyptus grandis
Eucgr.J02689 Eucalyptus grandis
Eucgr.L02617 Eucalyptus grandis
FAN04G1045 Fragaria x ananassa
FAN04G2966 Fragaria x ananassa
FAN08G3232 Fragaria x ananassa
FAN13G1011 Fragaria x ananassa
FAN13G1498 Fragaria x ananassa
FAN18G0519 Fragaria x ananassa
FAN18G1997 Fragaria x ananassa
FAN19G1097 Fragaria x ananassa
FAN23G1150 Fragaria x ananassa
FAN26G0309 Fragaria x ananassa
FAN28G0538 Fragaria x ananassa
FvH4_1g10280 Fragaria vesca
FvH4_5g03570 Fragaria vesca
FvH4_5g25470 Fragaria vesca
Glyma.02G093900 Glycine max
Glyma.04G016700 Glycine max
Glyma.06G016800 Glycine max
Glyma.10G289900 Glycine max
Glyma.18G288000 Glycine max
Glyma.20G099400 Glycine max
Gohir.A02G177900 Gossypium hirsutum
Gohir.A07G171300 Gossypium hirsutum
Gohir.A08G028800 Gossypium hirsutum
Gohir.A11G322900 Gossypium hirsutum
Gohir.D03G001900 Gossypium hirsutum
Gohir.D07G178100 Gossypium hirsutum
Gohir.D08G039500 Gossypium hirsutum
Gohir.D11G342000 Gossypium hirsutum
Gorai.001G199200 Gossypium raimondii
Gorai.003G002200 Gossypium raimondii
Gorai.004G038300 Gossypium raimondii
Gorai.007G372000 Gossypium raimondii
GSVIVG01013388001 Vitis vinifera
GSVIVG01020282001 Vitis vinifera
GSVIVG01026636001 Vitis vinifera
GSVIVG01026638001 Vitis vinifera
HanXRQChr15g0483411 Helianthus annuus
HanXRQChr16g0531891 Helianthus annuus
Haze_03606 Corylus avellana
Hma1.2p1_0085F.1_g044640 Hydrangea macrophylla
Hma1.2p1_0300F.1_g117990 Hydrangea macrophylla
HPP92_007110 Vanilla planifolia
Hund03601 Selenicereus undatus
Hund19694 Selenicereus undatus
Lalb_Chr17g0336211 Lupinus albus
Lalb_Chr21g0307381 Lupinus albus
Lalb_Chr23g0265691 Lupinus albus
Lj1g0001449 Lotus japonicus
Lj1g0007582 Lotus japonicus
Lj2P499T21 Lonicera japonica
Lj4A237T63 Lonicera japonica
Lj5g0015723 Lotus japonicus
Lsat_1_v5_gn_3_67961 Lactuca sativa
Manes.02G114200 Manihot esculenta
Manes.05G124300 Manihot esculenta
Mapoly0014s0060 Marchantia polymorpha
MBI05_g14352_MAGBIO Magnolia biondii
MBI08_g12256_MAGBIO Magnolia biondii
MCO16G163 Micromonas commoda
MD00G1207300 Malus domestica
MD02G1114900 Malus domestica
MD15G1230800 Malus domestica
Medtr1g115315 Medicago truncatula
Medtr3g115620 Medicago truncatula
Medtr7g023810 Medicago truncatula
MELO3C013727.2 Cucumis melo
MELO3C017032.2 Cucumis melo
Migut.H02206 Erythranthe guttata
MSTRG.2743 Avicennia marina
MSTRG.3632 Avicennia marina
Nitab4.5_0000495g0100 Nicotiana tabacum
Nitab4.5_0001467g0020 Nicotiana tabacum
Nitab4.5_0004608g0050 Nicotiana tabacum
Nitab4.5_0011394g0010 Nicotiana tabacum
Nn5g30993 Nelumbo nucifera
Nn6g31691 Nelumbo nucifera
Oeu004298.1 Olea europaea
Oeu004634.1 Olea europaea
Oeu012447.1 Olea europaea
Oeu013092.1 Olea europaea
Oeu015244.1 Olea europaea
Oeu019316.1 Olea europaea
Oeu021622.1 Olea europaea
Oeu025039.1 Olea europaea
Oeu025282.1 Olea europaea
Oeu030850.1 Olea europaea
Oeu036573.1 Olea europaea
Oeu042476.2 Olea europaea
Oeu045209.1 Olea europaea
Oeu045210.1 Olea europaea
Oeu045212.1 Olea europaea
Oeu053567.1 Olea europaea
Oeu053755.1 Olea europaea
Oeu054656.1 Olea europaea
Os01g0818400 Oryza sativa ssp. japonica
Peaxi162Scf00122g02520 Petunia axillaris
Peaxi162Scf01475g00015 Petunia axillaris
PGR119G0735 Punica granatum
PGSC0003DMG400001565 Solanum tuberosum
Phvul.007G011600 Phaseolus vulgaris
Phvul.008G014000 Phaseolus vulgaris
Phvul.009G012200 Phaseolus vulgaris
Potri.002G008800 Populus trichocarpa
Potri.005G101800 Populus trichocarpa
Potri.005G252800 Populus trichocarpa
Pp3c15_20000 Physcomitrium patens
Pp3c26_8569 Physcomitrium patens
Pp3c9_13640 Physcomitrium patens
Prupe.5G009600 Prunus persica
Prupe.7G183300 Prunus persica
Psat3g180920 Pisum sativum
Psat5g009440 Pisum sativum
Psat6g236200 Pisum sativum
PSO210G3657 Papaver somniferum
PSO541G1203 Papaver somniferum
PSO675G5809 Papaver somniferum
PSO761G0304 Papaver somniferum
QL06p052998 Quercus lobata
QL10p040498 Quercus lobata
RcHm_v2.0_Chr2g0097121 Rosa chinensis
RcHm_v2.0_Chr7g0215711 Rosa chinensis
Rhsim10G0195400 Rhododendron simsii
Sabra02G0006600 Salix brachista
Sabra05G0084200 Salix brachista
Sabra05G0196100 Salix brachista
SalBow3G0443 Salvia bowleyana
SalBow3G3634 Salvia bowleyana
Sc07g0001370 Simmondsia chinensis
Sed0018688 Sechium edule
Sed0028050 Sechium edule
SEGI_00926 Sequoiadendron giganteum
SEGI_10596 Sequoiadendron giganteum
SEGI_22190 Sequoiadendron giganteum
SEGI_28995 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30977 Striga asiatica
SGA_v2.0_scaffold2G00956 Striga asiatica
SHI31014 Sapria himalayana
SHI33750 Sapria himalayana
SMO239G0078 Selaginella moellendorffii
SMO351G0028 Selaginella moellendorffii
SMO356G0190 Selaginella moellendorffii
SMO361G0372 Selaginella moellendorffii
Solyc02g082670.3 Solanum lycopersicum
Sopen02g027410 Solanum pennellii
Sp1g18430 Schrenkiella parvula
Sp7g33330 Schrenkiella parvula
TAR376G0674 Trochodendron aralioides
TAR381G0572 Trochodendron aralioides
TAR628G0236 Trochodendron aralioides
TAR628G1219 Trochodendron aralioides
TAR628G1462 Trochodendron aralioides
THA.LOC104807427 Tarenaya hassleriana
THA.LOC104809843 Tarenaya hassleriana
THA.LOC104819717 Tarenaya hassleriana
Thecc.01G005200 Theobroma cacao
Thecc.08G061800 Theobroma cacao
Thhalv10008824m.g Eutrema salsugineum
Thhalv10009917m.g Eutrema salsugineum
Thhalv10025989m.g Eutrema salsugineum
TPR.G15513 Trifolium pratense
TPR.G38153 Trifolium pratense
TWI09G0377 Tripterygium wilfordii
TWI12G0341 Tripterygium wilfordii
TWI36G1759 Tripterygium wilfordii
TWI53G1377 Tripterygium wilfordii
TWI73G0309 Tripterygium wilfordii
unitig_736.g22731 Utricularia gibba
vmacro20630 Vaccinium macrocarpon
VMungo0720G2440 Vigna mungo
VMungo1309G2661 Vigna mungo
VMungo1383G1988 Vigna mungo
Zm00001eb149680 Zea mays
Zm00001eb368970 Zea mays

User provided reference genes

Program Settings