Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p36410 Brassica napus
A04p12180 Brassica napus
A05p44860 Brassica napus
A06p40100 Brassica napus
Aa31LG2G4080 Aethionema arabicum
Aa31LG5G12530 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4765 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4766 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3520 Anthoceros agrestis
Actinidia17568 Actinidia chinensis
Actinidia38199 Actinidia chinensis
Ah.04g157710 Amaranthus hybridus
Ah.06g188930 Amaranthus hybridus
AL3G11160 Arabidopsis lyrata
AL5G19070 Arabidopsis lyrata
AL7G50870 Arabidopsis lyrata
AL7G50880 Arabidopsis lyrata
Aqoxy3G03498 Aquilegia oxysepala
Aqoxy5G03873 Aquilegia oxysepala
Aqoxy6G00259 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2KXT4E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.99YWNZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DRZ38W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FS7J1R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SN40SK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TD6B9U Arachis hypogaea
AT3G01090 Arabidopsis thaliana
AT3G29160 Arabidopsis thaliana
AT5G39440 Arabidopsis thaliana
ATR0307G119 Amborella trichopoda
ATR0681G106 Amborella trichopoda
Atru.chr8.331 Acer truncatum
Atru.chr8.332 Acer truncatum
AUR62000535 Chenopodium quinoa
AUR62006884 Chenopodium quinoa
AUR62009708 Chenopodium quinoa
AUR62032355 Chenopodium quinoa
AUR62036237 Chenopodium quinoa
AUR62041850 Chenopodium quinoa
BcaB06g27307 Brassica carinata
BcaB06g27329 Brassica carinata
BcaB07g30094 Brassica carinata
BcaC01g04500 Brassica carinata
BcaC03g17564 Brassica carinata
BcaC05g30380 Brassica carinata
BcaC06g30882 Brassica carinata
BcaC06g33674 Brassica carinata
BcaC09g47678 Brassica carinata
BcaNung02507 Brassica carinata
BNapus_Darmor_BZH_scaffold_113p00080 Brassica napus
BNapus_Darmor_BZH_scaffold_97p00080 Brassica napus
BolC1t05926H Brassica oleracea
BolC2t11591H Brassica oleracea
BolC3t16244H Brassica oleracea
BolC4t26168H Brassica oleracea
BolC5t35115H Brassica oleracea
BolC7t44327H Brassica oleracea
BolC7t45676H Brassica oleracea
BraA01t04637Z Brassica rapa
BraA02t08638Z Brassica rapa
BraA04t16881Z Brassica rapa
BraA05t23171Z Brassica rapa
BraA06t26925Z Brassica rapa
C02p55340 Brassica napus
C03p39800 Brassica napus
C04p45830 Brassica napus
C07p38050 Brassica napus
C09p75440 Brassica napus
CAN.G1335.4 Capsicum annuum
CAN.G398.1 Capsicum annuum
CAN.G398.2 Capsicum annuum
CAN.G479.56 Capsicum annuum
CANSAT64G1228 Cannabis sativa
CANSAT64G2077 Cannabis sativa
CARHR075950 Cardamine hirsuta
CARHR152320 Cardamine hirsuta
Carub.0003s0107 Capsella rubella
Carub.0005s0788 Capsella rubella
Carub.0007s3649 Capsella rubella
Carub.0007s3650 Capsella rubella
Ca_04858_v3 Cicer arietinum L.
Ca_06800_v3 Cicer arietinum L.
CBR_g19224 Chara braunii
CBR_g29500 Chara braunii
CBR_g51928 Chara braunii
Cc04_g14370 Coffea canephora
Cc06_g20520 Coffea canephora
Cc07_g03680 Coffea canephora
CDE04G0841 Ceratophyllum demersum
CDE07G0442 Ceratophyllum demersum
Cfa007597 Carpinus fangiana
Cfa007598 Carpinus fangiana
Cfa022604 Carpinus fangiana
Ciclev10011600m.g Citrus clementina
CiPaw.03G021700 Carya illinoinensis
CiPaw.04G014400 Carya illinoinensis
ClCG06G000450 Citrullus lanatus
ClCG11G000540 Citrullus lanatus
COL.COLO4_12231 Corchorus olitorius
COL.COLO4_34599 Corchorus olitorius
Cpa.g.sc14.127 Carica papaya
Cre04.g211600 Chlamydomonas reinhardtii
Cre13.g570250 Chlamydomonas reinhardtii
CsaV3_5G014200 Cucumis sativus L.
CsaV3_6G006250 Cucumis sativus L.
CSS0007360 Camellia sinensis var. sinensis
CSS0018482 Camellia sinensis var. sinensis
CSS0019393 Camellia sinensis var. sinensis
CSS0050125 Camellia sinensis var. sinensis
DCAR_011074 Daucus carota
DCAR_013533 Daucus carota
DCAR_025388 Daucus carota
Dinv10660 Davidia involucrata
Dinv12593 Davidia involucrata
Dinv33789 Davidia involucrata
Dinv38749 Davidia involucrata
Duzib147G1368 Durio zibethinus
Duzib187G1255 Durio zibethinus
Duzib264G0170 Durio zibethinus
ECA238G4778 Erigeron canadensis
ECA246G0178 Erigeron canadensis
ECA246G3963 Erigeron canadensis
ECA247G0307 Erigeron canadensis
EL10Ac7g15880 Beta vulgaris
Eucgr.B00544 Eucalyptus grandis
Eucgr.B00547 Eucalyptus grandis
Eucgr.J01364 Eucalyptus grandis
FAN02G0584 Fragaria x ananassa
FAN05G4817 Fragaria x ananassa
FAN09G0744 Fragaria x ananassa
FAN14G0776 Fragaria x ananassa
FvH4_6g47850 Fragaria vesca
Glyma.08G240300 Glycine max
Glyma.08G240400 Glycine max
Glyma.13G060400 Glycine max
Glyma.18G262900 Glycine max
Glyma.19G026100 Glycine max
Gohir.A07G206800 Gossypium hirsutum
Gohir.A09G012900 Gossypium hirsutum
Gohir.A11G070750 Gossypium hirsutum
Gohir.D07G213000 Gossypium hirsutum
Gohir.D09G011566 Gossypium hirsutum
Gohir.D11G010450 Gossypium hirsutum
Gohir.D11G074650 Gossypium hirsutum
Gorai.001G241000 Gossypium raimondii
Gorai.006G013500 Gossypium raimondii
Gorai.007G011900 Gossypium raimondii
Gorai.007G080200 Gossypium raimondii
GSVIVG01011467001 Vitis vinifera
GSVIVG01025806001 Vitis vinifera
HanXRQChr05g0157061 Helianthus annuus
HanXRQChr07g0199591 Helianthus annuus
HanXRQChr10g0298491 Helianthus annuus
HanXRQChr15g0473131 Helianthus annuus
HanXRQChr17g0545951 Helianthus annuus
Haze_14494 Corylus avellana
Haze_26484 Corylus avellana
Haze_27206 Corylus avellana
Hma1.2p1_0060F.1_g033470 Hydrangea macrophylla
Hma1.2p1_0409F.1_g146680 Hydrangea macrophylla
Hma1.2p1_2933F.1_g330540 Hydrangea macrophylla
HPP92_009063 Vanilla planifolia
HPP92_009078 Vanilla planifolia
HPP92_012448 Vanilla planifolia
Hund15199 Selenicereus undatus
Hund15202 Selenicereus undatus
Lalb_Chr02g0159141 Lupinus albus
Lalb_Chr06g0175161 Lupinus albus
Lalb_Chr21g0318551 Lupinus albus
Lj1A1082T64 Lonicera japonica
Lj1g0025883 Lotus japonicus
Lj2g0018663 Lotus japonicus
Lj4A114T78 Lonicera japonica
Lj5A107G96 Lonicera japonica
Lju41C9T1 Lonicera japonica
Lsat_1_v5_gn_2_89321 Lactuca sativa
Lsat_1_v5_gn_3_99781 Lactuca sativa
Lsat_1_v5_gn_5_21601 Lactuca sativa
Lsat_1_v5_gn_9_32220 Lactuca sativa
Manes.01G100900 Manihot esculenta
Manes.02G049300 Manihot esculenta
Mapoly0038s0082 Marchantia polymorpha
Mapoly0160s0010 Marchantia polymorpha
MBI10_g39120_MAGBIO Magnolia biondii
MBI13_g38673_MAGBIO Magnolia biondii
MCO02G473 Micromonas commoda
MD09G1056200 Malus domestica
MD17G1053700 Malus domestica
Medtr3g099920 Medicago truncatula
Medtr6g012980 Medicago truncatula
Medtr6g012990 Medicago truncatula
Medtr6g048250 Medicago truncatula
Medtr6g048260 Medicago truncatula
MELO3C016628.2 Cucumis melo
Migut.H00673 Erythranthe guttata
Migut.I00215 Erythranthe guttata
Migut.K01302 Erythranthe guttata
MSTRG.15467 Avicennia marina
MSTRG.22999 Avicennia marina
MSTRG.3338 Avicennia marina
MSTRG.6304 Avicennia marina
Nitab4.5_0000109g0500 Nicotiana tabacum
Nitab4.5_0000109g0510 Nicotiana tabacum
Nitab4.5_0000212g0130 Nicotiana tabacum
Nitab4.5_0000568g0250 Nicotiana tabacum
Nitab4.5_0001211g0160 Nicotiana tabacum
Nitab4.5_0001591g0090 Nicotiana tabacum
Nitab4.5_0002756g0100 Nicotiana tabacum
Nitab4.5_0003347g0100 Nicotiana tabacum
Nitab4.5_0005795g0010 Nicotiana tabacum
Nitab4.5_0020296g0010 Nicotiana tabacum
Nn4g23285 Nelumbo nucifera
Nn7g38239 Nelumbo nucifera
Oeu000845.1 Olea europaea
Oeu020663.1 Olea europaea
Oeu047274.1 Olea europaea
Oeu052461.1 Olea europaea
Oeu057808.1 Olea europaea
Os03g0289100 Oryza sativa ssp. japonica
Os05g0530500 Oryza sativa ssp. japonica
Os07g0194100 Oryza sativa ssp. japonica
Os08g0484600 Oryza sativa ssp. japonica
Peaxi162Scf00222g00912 Petunia axillaris
Peaxi162Scf00274g00343 Petunia axillaris
Peaxi162Scf00629g00026 Petunia axillaris
PGR083G1119 Punica granatum
PGR083G1214 Punica granatum
PGR083G2414 Punica granatum
PGSC0003DMG400024561 Solanum tuberosum
Phvul.004G032000 Phaseolus vulgaris
Phvul.008G039400 Phaseolus vulgaris
Phvul.008G039500 Phaseolus vulgaris
Potri.004G115900 Populus trichocarpa
Potri.013G090800 Populus trichocarpa
Potri.017G087900 Populus trichocarpa
Pp3c13_2340 Physcomitrium patens
Pp3c18_12780 Physcomitrium patens
Pp3c1_37450 Physcomitrium patens
Pp3c2_5790 Physcomitrium patens
Pp3c3_5570 Physcomitrium patens
PRCOL_00000486 Prasinoderma coloniale
PRCOL_00007266 Prasinoderma coloniale
Prupe.3G262900 Prunus persica
Psat1g069760 Pisum sativum
PSO017G0045 Papaver somniferum
PSO063G1984 Papaver somniferum
PSO409G0026 Papaver somniferum
PSO478G5094 Papaver somniferum
PSO724G0665 Papaver somniferum
PSO729G0257 Papaver somniferum
QL01p000277 Quercus lobata
QL02p084951 Quercus lobata
RcHm_v2.0_Chr2g0167051 Rosa chinensis
Rhsim04G0117100 Rhododendron simsii
Rhsim04G0117300 Rhododendron simsii
Rhsim08G0072500 Rhododendron simsii
Rhsim08G0151900 Rhododendron simsii
Sabra04G0067800 Salix brachista
Sabra17G0077700 Salix brachista
SalBow1G7682 Salvia bowleyana
SalBow1G8426 Salvia bowleyana
SalBow6G2740 Salvia bowleyana
Sc16g0009720 Simmondsia chinensis
Sed0016783 Sechium edule
Sed0018345 Sechium edule
Sed0023564 Sechium edule
SEGI_05584 Sequoiadendron giganteum
SGA_v2.0_scaffold313G48327 Striga asiatica
SGA_v2.0_scaffold413G51172 Striga asiatica
SGA_v2.0_scaffold4G02430 Striga asiatica
SMO196G0052 Selaginella moellendorffii
SMO358G0107 Selaginella moellendorffii
SMO358G0686 Selaginella moellendorffii
Solyc02g067030.4 Solanum lycopersicum
Solyc03g115700.3 Solanum lycopersicum
Sopen02g016220 Solanum pennellii
Sopen03g034680 Solanum pennellii
Sp2g17770 Schrenkiella parvula
Sp3g01020 Schrenkiella parvula
Sp7g02540 Schrenkiella parvula
TAR371G0650 Trochodendron aralioides
TAR622G1104 Trochodendron aralioides
TAR623G0827 Trochodendron aralioides
THA.LOC104805487 Tarenaya hassleriana
THA.LOC104821014 Tarenaya hassleriana
THA.LOC104822350 Tarenaya hassleriana
Thecc.04G087900 Theobroma cacao
Thhalv10004026m.g Eutrema salsugineum
Thhalv10020553m.g Eutrema salsugineum
Thhalv10028234m.g Eutrema salsugineum
TPR.G26174 Trifolium pratense
TPR.G26191 Trifolium pratense
TPR.G33467 Trifolium pratense
TWI32G0614 Tripterygium wilfordii
TWI34G0578 Tripterygium wilfordii
TWI34G1094 Tripterygium wilfordii
vmacro08980 Vaccinium macrocarpon
vmacro08981 Vaccinium macrocarpon
vmacro17575 Vaccinium macrocarpon
vmacro18168 Vaccinium macrocarpon
VMungo0464G1649 Vigna mungo
VMungo1383G1877 Vigna mungo
VMungo1383G3727 Vigna mungo
Zm00001eb013270 Zea mays
Zm00001eb094400 Zea mays
Zm00001eb293240 Zea mays
Zm00001eb353700 Zea mays
Zm00001eb379640 Zea mays

User provided reference genes

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