Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p41980 Brassica napus
A06p44770 Brassica napus
A07p32300 Brassica napus
Aa31LG2G6050 Aethionema arabicum
Aa31sc219G20 Aethionema arabicum
Aa31sc429G10 Aethionema arabicum
Actinidia01351 Actinidia chinensis
Actinidia01453 Actinidia chinensis
Actinidia08134 Actinidia chinensis
Actinidia15100 Actinidia chinensis
Ah.02g130250 Amaranthus hybridus
Ah.03g132980 Amaranthus hybridus
AL2G26700 Arabidopsis lyrata
AL5G15250 Arabidopsis lyrata
AL8G11100 Arabidopsis lyrata
Aqoxy1G04291 Aquilegia oxysepala
Aqoxy5G03748_Aqoxy5G03749 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.77GR70 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H8DYH4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K6464P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LH6NP7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N3AB77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S6WQLB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X4HB4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YVF32X Arachis hypogaea
AT1G67900 Arabidopsis thaliana
AT3G26490 Arabidopsis thaliana
AT5G47800 Arabidopsis thaliana
ATR0751G153 Amborella trichopoda
ATR0824G039 Amborella trichopoda
Atru.chr1.2172 Acer truncatum
Atru.chr1.2173 Acer truncatum
Atru.chr1.2176 Acer truncatum
Atru.chr11.2144 Acer truncatum
AUR62005468 Chenopodium quinoa
AUR62024274 Chenopodium quinoa
BcaB03g15383 Brassica carinata
BcaB07g30759 Brassica carinata
BcaC06g31069 Brassica carinata
BcaC06g33908 Brassica carinata
BcaC08g46019 Brassica carinata
BolC6t38911H Brassica oleracea
BolC7t43686H Brassica oleracea
BolC7t44073H Brassica oleracea
BraA06t27116Z Brassica rapa
BraA06t27350Z Brassica rapa
BraA07t30855Z Brassica rapa
C06p38140 Brassica napus
C07p31430 Brassica napus
C07p35490 Brassica napus
CAN.G493.4 Capsicum annuum
CANSAT01G1413 Cannabis sativa
CANSAT56G1187 Cannabis sativa
CARHR060550 Cardamine hirsuta
CARHR147470 Cardamine hirsuta
CARHR173530 Cardamine hirsuta
Carub.0002s1439 Capsella rubella
Carub.0005s0447 Capsella rubella
Carub.0008s0070 Capsella rubella
Ca_00775_v3 Cicer arietinum L.
Ca_04557_v3 Cicer arietinum L.
Ca_13508_v3 Cicer arietinum L.
Ca_22589_v3 Cicer arietinum L.
Cc09_g00190 Coffea canephora
Cc11_g15800 Coffea canephora
CDE02G2114 Ceratophyllum demersum
CDE08G0229 Ceratophyllum demersum
Cfa000017 Carpinus fangiana
Cfa009219 Carpinus fangiana
Ciclev10014681m.g Citrus clementina
Ciclev10030958m.g Citrus clementina
CiPaw.05G181300 Carya illinoinensis
CiPaw.06G067300 Carya illinoinensis
CiPaw.09G110700 Carya illinoinensis
CiPaw.10G083500 Carya illinoinensis
ClCG01G011490 Citrullus lanatus
ClCG01G021130 Citrullus lanatus
ClCG05G025790 Citrullus lanatus
COL.COLO4_04828 Corchorus olitorius
COL.COLO4_31952 Corchorus olitorius
Cpa.g.sc27.206 Carica papaya
Cpa.g.sc33.31 Carica papaya
CsaV3_1G015290 Cucumis sativus L.
CsaV3_5G031060 Cucumis sativus L.
CsaV3_6G048130 Cucumis sativus L.
CSS0012063 Camellia sinensis var. sinensis
CSS0013643 Camellia sinensis var. sinensis
CSS0020827 Camellia sinensis var. sinensis
DCAR_007053 Daucus carota
DCAR_022844 Daucus carota
DCAR_024424 Daucus carota
DCAR_026510 Daucus carota
DCAR_031156 Daucus carota
Dinv04388 Davidia involucrata
Dinv07141 Davidia involucrata
Dinv14727 Davidia involucrata
Dinv15221 Davidia involucrata
Duzib192G0548 Durio zibethinus
Duzib248G0202 Durio zibethinus
Duzib251G0025 Durio zibethinus
Duzib268G0024 Durio zibethinus
ECA234G2342 Erigeron canadensis
ECA246G3570 Erigeron canadensis
EL10Ac6g13825 Beta vulgaris
Eucgr.D00944 Eucalyptus grandis
Eucgr.H02493 Eucalyptus grandis
FAN07G2200 Fragaria x ananassa
FAN12G0003 Fragaria x ananassa
FAN12G0083 Fragaria x ananassa
FAN17G0689 Fragaria x ananassa
FAN21G1829 Fragaria x ananassa
FAN22G0978 Fragaria x ananassa
FAN22G1413 Fragaria x ananassa
FAN25G2213 Fragaria x ananassa
FvH4_3g00220 Fragaria vesca
FvH4_4g25650 Fragaria vesca
Glyma.01G025300 Glycine max
Glyma.02G039400 Glycine max
Glyma.07G269100 Glycine max
Glyma.08G281700 Glycine max
Glyma.09G015900 Glycine max
Glyma.15G121700 Glycine max
Glyma.17G004500 Glycine max
Glyma.18G145000 Glycine max
Gohir.A01G159000 Gossypium hirsutum
Gohir.A03G134600 Gossypium hirsutum
Gohir.A06G202900 Gossypium hirsutum
Gohir.A12G145000 Gossypium hirsutum
Gohir.D01G151400 Gossypium hirsutum
Gohir.D02G158350 Gossypium hirsutum
Gohir.D06G218800 Gossypium hirsutum
Gohir.D12G149650 Gossypium hirsutum
Gorai.002G187700 Gossypium raimondii
Gorai.005G177600 Gossypium raimondii
Gorai.008G161100 Gossypium raimondii
Gorai.010G247500 Gossypium raimondii
GSVIVG01000534001 Vitis vinifera
GSVIVG01003474001 Vitis vinifera
HanXRQChr02g0041221 Helianthus annuus
HanXRQChr06g0174431 Helianthus annuus
HanXRQChr09g0271241 Helianthus annuus
HanXRQChr09g0271251 Helianthus annuus
HanXRQChr12g0385171 Helianthus annuus
HanXRQChr12g0385801 Helianthus annuus
HanXRQChr15g0470201 Helianthus annuus
HanXRQChr16g0515401 Helianthus annuus
HanXRQChr17g0539741 Helianthus annuus
HanXRQChr17g0540021 Helianthus annuus
HanXRQChr17g0569571 Helianthus annuus
Haze_07044 Corylus avellana
Haze_12255 Corylus avellana
Hma1.2p1_0079F.1_g041010 Hydrangea macrophylla
Hma1.2p1_0394F.1_g143560 Hydrangea macrophylla
HPP92_020493 Vanilla planifolia
HPP92_020494 Vanilla planifolia
HPP92_023368 Vanilla planifolia
HPP92_023369 Vanilla planifolia
Hund06030 Selenicereus undatus
Hund25390 Selenicereus undatus
Lalb_Chr05g0216541 Lupinus albus
Lalb_Chr07g0176881 Lupinus albus
Lalb_Chr15g0088351 Lupinus albus
Lalb_Chr16g0381861 Lupinus albus
Lalb_Chr18g0057431 Lupinus albus
Lj1A1248T45 Lonicera japonica
Lj2g0021318 Lotus japonicus
Lj3C1059T8 Lonicera japonica
Lj4g0003866 Lotus japonicus
Lj4g0022182 Lotus japonicus
Lj6g0002212 Lotus japonicus
Lj6P813T23 Lonicera japonica
Lsat_1_v5_gn_3_30600 Lactuca sativa
Lsat_1_v5_gn_4_4140 Lactuca sativa
Lsat_1_v5_gn_4_64180 Lactuca sativa
Lsat_1_v5_gn_7_12801 Lactuca sativa
Manes.08G074200 Manihot esculenta
Manes.09G084900 Manihot esculenta
Manes.12G022400 Manihot esculenta
Manes.13G023500 Manihot esculenta
Mapoly0133s0039 Marchantia polymorpha
MBI06_g00007_MAGBIO Magnolia biondii
MBI14_g46786_MAGBIO Magnolia biondii
MD05G1363200 Malus domestica
MD10G1340700 Malus domestica
MD13G1100800 Malus domestica
MD16G1101200 Malus domestica
Medtr2g027410 Medicago truncatula
Medtr4g134210 Medicago truncatula
Medtr5g032780 Medicago truncatula
Medtr8g069330 Medicago truncatula
MELO3C007999.2 Cucumis melo
MELO3C011945.2 Cucumis melo
MELO3C021671.2 Cucumis melo
Migut.M01460 Erythranthe guttata
MSTRG.13102 Avicennia marina
MSTRG.13348 Avicennia marina
MSTRG.2425 Avicennia marina
MSTRG.564 Avicennia marina
MSTRG.7116 Avicennia marina
MSTRG.7940 Avicennia marina
Nitab4.5_0000112g0080 Nicotiana tabacum
Nitab4.5_0000740g0090 Nicotiana tabacum
Nitab4.5_0001893g0020 Nicotiana tabacum
Nitab4.5_0005505g0010 Nicotiana tabacum
Nn1g07570 Nelumbo nucifera
Nn1g07742 Nelumbo nucifera
Nn3g16696 Nelumbo nucifera
Nn4g22598 Nelumbo nucifera
Oeu001698.1 Olea europaea
Oeu022390.1 Olea europaea
Oeu026222.1 Olea europaea
Oeu036118.1 Olea europaea
Oeu056710.1 Olea europaea
Oeu057007.1 Olea europaea
Oeu057539.1 Olea europaea
Os02g0594700 Oryza sativa ssp. japonica
Os04g0477000 Oryza sativa ssp. japonica
Os09g0266600 Oryza sativa ssp. japonica
Peaxi162Scf00128g00218 Petunia axillaris
PGR004G1215 Punica granatum
PGR119G0442 Punica granatum
PGSC0003DMG401008799 Solanum tuberosum
PGSC0003DMG401018603 Solanum tuberosum
Phvul.002G149400 Phaseolus vulgaris
Phvul.003G064600 Phaseolus vulgaris
Phvul.003G088400 Phaseolus vulgaris
Phvul.006G136000 Phaseolus vulgaris
Potri.006G003000 Populus trichocarpa
Potri.008G186100 Populus trichocarpa
Potri.010G046800 Populus trichocarpa
Potri.016G003700 Populus trichocarpa
Pp3c12_21560 Physcomitrium patens
Pp3c12_21590 Physcomitrium patens
Pp3c3_37640 Physcomitrium patens
Pp3c4_7160 Physcomitrium patens
Prupe.1G245700 Prunus persica
Prupe.4G002400 Prunus persica
Psat0s10723g0040 Pisum sativum
Psat1g172080 Pisum sativum
Psat2g084280 Pisum sativum
Psat4g115680 Pisum sativum
Psat7g080560 Pisum sativum
Psat7g080600 Pisum sativum
PSO017G5075 Papaver somniferum
PSO063G0936 Papaver somniferum
PSO067G0003 Papaver somniferum
PSO210G5811 Papaver somniferum
PSO210G6407 Papaver somniferum
PSO478G0803 Papaver somniferum
QL03p057791 Quercus lobata
QL05p066650 Quercus lobata
RcHm_v2.0_Chr4g0433101 Rosa chinensis
RcHm_v2.0_Chr5g0000301 Rosa chinensis
Rhsim12G0040200 Rhododendron simsii
Rhsim12G0109900 Rhododendron simsii
Rhsim13G0138600 Rhododendron simsii
Sabra06G0002800 Salix brachista
Sabra08G0141100 Salix brachista
Sabra10G0021500 Salix brachista
Sabra16G0008700 Salix brachista
SalBow1G2172 Salvia bowleyana
SalBow1G2920 Salvia bowleyana
SalBow2G2436 Salvia bowleyana
SalBow8G3534 Salvia bowleyana
SalBow8G3876 Salvia bowleyana
SalBow8G4190 Salvia bowleyana
Sc04g0009520 Simmondsia chinensis
Sc17g0008040 Simmondsia chinensis
Sc17g0008050 Simmondsia chinensis
Sed0001577 Sechium edule
Sed0007071 Sechium edule
Sed0015571 Sechium edule
Sed0022280 Sechium edule
SEGI_03092 Sequoiadendron giganteum
SEGI_10057 Sequoiadendron giganteum
SGA_v2.0_scaffold239G43980 Striga asiatica
SGA_v2.0_scaffold7G03673 Striga asiatica
SGA_v2.0_scaffold87G27074 Striga asiatica
Solyc05g013570.3 Solanum lycopersicum
Sopen05g008470 Solanum pennellii
Sp2g15600 Schrenkiella parvula
Sp5g22910 Schrenkiella parvula
TAR371G1224 Trochodendron aralioides
TAR374G0582 Trochodendron aralioides
TAR622G1297 Trochodendron aralioides
TAR627G0462 Trochodendron aralioides
TAR629G2732 Trochodendron aralioides
THA.LOC104805283 Tarenaya hassleriana
THA.LOC104806747 Tarenaya hassleriana
THA.LOC104807846 Tarenaya hassleriana
Thecc.02G261100 Theobroma cacao
Thecc.06G242700 Theobroma cacao
Thhalv10000839m.g Eutrema salsugineum
Thhalv10003883m.g Eutrema salsugineum
Thhalv10019709m.g Eutrema salsugineum
TPR.G10499 Trifolium pratense
TPR.G17760 Trifolium pratense
TPR.G38792 Trifolium pratense
TPR.G5935 Trifolium pratense
TWI18G1360 Tripterygium wilfordii
TWI36G1180 Tripterygium wilfordii
TWI38G1665 Tripterygium wilfordii
TWI63G1526 Tripterygium wilfordii
TWI75G1616 Tripterygium wilfordii
vmacro01123 Vaccinium macrocarpon
vmacro03593 Vaccinium macrocarpon
vmacro16192 Vaccinium macrocarpon
VMungo0251G1632 Vigna mungo
VMungo0457G0001 Vigna mungo
VMungo0540G0633 Vigna mungo
VMungo1215G1363 Vigna mungo
Zm00001eb079670 Zea mays
Zm00001eb183690 Zea mays
Zm00001eb246000 Zea mays
Zm00001eb308690 Zea mays

User provided reference genes

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