Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p11130 Brassica napus
A05p05150 Brassica napus
A10p17670 Brassica napus
Aa31LG10G14820 Aethionema arabicum
Aa31LG1G12490 Aethionema arabicum
Aa31LG1G26650 Aethionema arabicum
Actinidia07123 Actinidia chinensis
Actinidia12673 Actinidia chinensis
Actinidia20446 Actinidia chinensis
Actinidia24088 Actinidia chinensis
Ah.01g003190 Amaranthus hybridus
Ah.08g217440 Amaranthus hybridus
AL4G44160 Arabidopsis lyrata
AL5G42840 Arabidopsis lyrata
AL8G37060 Arabidopsis lyrata
Aqoxy4G03243 Aquilegia oxysepala
Aqoxy7G01342 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4ZJ950 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G4VXQ4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H6IXD1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P5QAAZ Arachis hypogaea
AT2G45070 Arabidopsis thaliana
AT3G60540 Arabidopsis thaliana
AT5G60460 Arabidopsis thaliana
ATR0759G050 Amborella trichopoda
ATR0789G104 Amborella trichopoda
ATR0824G116 Amborella trichopoda
Atru.chr3.3670 Acer truncatum
Atru.chr4.641 Acer truncatum
Atru.chr5.220 Acer truncatum
AUR62013713 Chenopodium quinoa
BcaB01g03297 Brassica carinata
BcaB01g04658 Brassica carinata
BcaB02g08957 Brassica carinata
BcaB02g08958 Brassica carinata
BcaB08g36344 Brassica carinata
BcaC01g05163 Brassica carinata
BcaC02g07133 Brassica carinata
BcaC02g12254 Brassica carinata
BcaC04g19705 Brassica carinata
BolC3t13747H Brassica oleracea
BolC4t22230H Brassica oleracea
BolC4t28645H Brassica oleracea
BolC9t58187H Brassica oleracea
BraA03t10428Z Brassica rapa
BraA04t18826Z Brassica rapa
BraA05t19489Z Brassica rapa
BraA10t43846Z Brassica rapa
C03p12830 Brassica napus
C04p06000 Brassica napus
C09p53110 Brassica napus
CAN.G1742.1 Capsicum annuum
CAN.G365.6 Capsicum annuum
CAN.G934.3 Capsicum annuum
CANSAT21G0648 Cannabis sativa
CANSAT54G1712 Cannabis sativa
CARHR140320 Cardamine hirsuta
CARHR170940 Cardamine hirsuta
CARHR274120 Cardamine hirsuta
Carub.0004s2766 Capsella rubella
Carub.0008s2115 Capsella rubella
Ca_01427_v3 Cicer arietinum L.
Ca_02124_v3 Cicer arietinum L.
Ca_17920_v3 Cicer arietinum L.
Ca_18128_v3 Cicer arietinum L.
Ca_19251_v3 Cicer arietinum L.
CBR_g22251 Chara braunii
CBR_g22253 Chara braunii
Cc00_g28650 Coffea canephora
Cc02_g24620 Coffea canephora
CDE02G0123 Ceratophyllum demersum
CDE06G2510 Ceratophyllum demersum
Cfa011139 Carpinus fangiana
Cfa011350 Carpinus fangiana
Ciclev10027536m.g Citrus clementina
Ciclev10030438m.g Citrus clementina
CiPaw.05G044200 Carya illinoinensis
CiPaw.07G047200 Carya illinoinensis
CiPaw.13G031400 Carya illinoinensis
CiPaw.13G109000 Carya illinoinensis
CiPaw.14G024700 Carya illinoinensis
ClCG02G021060 Citrullus lanatus
ClCG05G000250 Citrullus lanatus
COL.COLO4_05425 Corchorus olitorius
COL.COLO4_10320 Corchorus olitorius
COL.COLO4_12470 Corchorus olitorius
Cpa.g.sc170.26 Carica papaya
Cpa.g.sc435.3 Carica papaya
Cpa.g.sc8.43 Carica papaya
Cre07.g318450 Chlamydomonas reinhardtii
CsaV3_3G007400 Cucumis sativus L.
CsaV3_6G021770 Cucumis sativus L.
CSS0002851 Camellia sinensis var. sinensis
CSS0005852 Camellia sinensis var. sinensis
CSS0017421 Camellia sinensis var. sinensis
CSS0032624 Camellia sinensis var. sinensis
CSS0037481 Camellia sinensis var. sinensis
DCAR_015549 Daucus carota
DCAR_023872 Daucus carota
Dinv32767 Davidia involucrata
Dinv43659 Davidia involucrata
Duzib133G0884 Durio zibethinus
Duzib138G1386 Durio zibethinus
Duzib150G1171 Durio zibethinus
Duzib168G0438 Durio zibethinus
Duzib170G0315 Durio zibethinus
Duzib268G0657 Durio zibethinus
ECA233G1629 Erigeron canadensis
ECA234G3676 Erigeron canadensis
EL10Ac1g00824 Beta vulgaris
Eucgr.H00035 Eucalyptus grandis
FAN01G0933 Fragaria x ananassa
FAN03G3329 Fragaria x ananassa
FAN06G0326 Fragaria x ananassa
FAN06G1662 Fragaria x ananassa
FAN10G1170 Fragaria x ananassa
FAN10G4009 Fragaria x ananassa
FAN11G0363 Fragaria x ananassa
FAN16G2580 Fragaria x ananassa
FAN21G1909 Fragaria x ananassa
FAN25G0307 Fragaria x ananassa
FvH4_3g32770 Fragaria vesca
FvH4_7g10790 Fragaria vesca
Glyma.01G133400 Glycine max
Glyma.03G034100 Glycine max
Glyma.11G155259 Glycine max
Glyma.12G070500 Glycine max
Glyma.12G171400 Glycine max
Glyma.13G327801 Glycine max
Glyma.18G263000 Glycine max
Gohir.A07G116550 Gossypium hirsutum
Gohir.A07G205700 Gossypium hirsutum
Gohir.A08G008600 Gossypium hirsutum
Gohir.A08G137366 Gossypium hirsutum
Gohir.A08G194050 Gossypium hirsutum
Gohir.A11G078100 Gossypium hirsutum
Gohir.A13G221100 Gossypium hirsutum
Gohir.D03G115850 Gossypium hirsutum
Gohir.D07G120950 Gossypium hirsutum
Gohir.D07G211800 Gossypium hirsutum
Gohir.D08G018600 Gossypium hirsutum
Gohir.D08G158300 Gossypium hirsutum
Gohir.D11G082500 Gossypium hirsutum
Gohir.D13G225100 Gossypium hirsutum
Gorai.001G130500 Gossypium raimondii
Gorai.001G239300 Gossypium raimondii
Gorai.004G013100 Gossypium raimondii
Gorai.004G164600 Gossypium raimondii
Gorai.004G225200 Gossypium raimondii
Gorai.007G088200 Gossypium raimondii
Gorai.013G255900 Gossypium raimondii
GSVIVG01018177001 Vitis vinifera
GSVIVG01018182001 Vitis vinifera
HanXRQChr02g0055921 Helianthus annuus
HanXRQChr04g0123411 Helianthus annuus
HanXRQChr16g0519721 Helianthus annuus
HanXRQChr17g0568171 Helianthus annuus
Haze_23890 Corylus avellana
Hma1.2p1_0301F.1_g118200 Hydrangea macrophylla
Hma1.2p1_0341F.1_g130270 Hydrangea macrophylla
Hma1.2p1_1030F.1_g249900 Hydrangea macrophylla
Hma1.2p1_1931F.1_g308010 Hydrangea macrophylla
HPP92_015413 Vanilla planifolia
HPP92_018109 Vanilla planifolia
HPP92_026983 Vanilla planifolia
Hund17054 Selenicereus undatus
Hund23174 Selenicereus undatus
Lalb_Chr01g0021491 Lupinus albus
Lalb_Chr07g0190351 Lupinus albus
Lj3g0022668 Lotus japonicus
LjContig00141g0009702 Lotus japonicus
Lsat_1_v5_gn_4_44381 Lactuca sativa
Lsat_1_v5_gn_6_46540 Lactuca sativa
Lsat_1_v5_gn_7_10180 Lactuca sativa
Manes.01G270000 Manihot esculenta
Manes.04G023900 Manihot esculenta
Manes.05G050100 Manihot esculenta
Manes.11G142600 Manihot esculenta
Mapoly0159s0021 Marchantia polymorpha
MBI01_g16591_MAGBIO Magnolia biondii
MBI04_g12185_MAGBIO Magnolia biondii
MBI15_g00076_MAGBIO Magnolia biondii
MCO01G436 Micromonas commoda
MD03G1115300 Malus domestica
MD07G1113000 Malus domestica
MD11G1132800 Malus domestica
Medtr1g082400 Medicago truncatula
Medtr2g093770 Medicago truncatula
Medtr4g028080 Medicago truncatula
Medtr8g086330 Medicago truncatula
MELO3C005959.2 Cucumis melo
MELO3C025763.2 Cucumis melo
MELO3C030468.2 Cucumis melo
Migut.B01579 Erythranthe guttata
Migut.D02198 Erythranthe guttata
Migut.N01767 Erythranthe guttata
Migut.N01770 Erythranthe guttata
Migut.N01777 Erythranthe guttata
MSTRG.18651 Avicennia marina
MSTRG.21137 Avicennia marina
Nitab4.5_0000181g0010 Nicotiana tabacum
Nitab4.5_0000882g0090 Nicotiana tabacum
Nitab4.5_0001329g0030 Nicotiana tabacum
Nitab4.5_0003581g0010 Nicotiana tabacum
Nitab4.5_0005050g0040 Nicotiana tabacum
Nitab4.5_0007776g0030 Nicotiana tabacum
Nn2g10733 Nelumbo nucifera
Nn2g13045 Nelumbo nucifera
Nn3g19631 Nelumbo nucifera
Nn5g29359 Nelumbo nucifera
Nn6g32230 Nelumbo nucifera
Nn8g41010 Nelumbo nucifera
Oeu000037.2 Olea europaea
Oeu001258.1 Olea europaea
Oeu005895.1 Olea europaea
Oeu009623.1 Olea europaea
Oeu011001.1 Olea europaea
Oeu064577.1 Olea europaea
Os11g0104050 Oryza sativa ssp. japonica
Os12g0103300 Oryza sativa ssp. japonica
Os12g0173366 Oryza sativa ssp. japonica
Peaxi162Scf00350g00217 Petunia axillaris
Peaxi162Scf00377g00022 Petunia axillaris
Peaxi162Scf01052g00013 Petunia axillaris
PGR004G0727 Punica granatum
PGR119G2055 Punica granatum
PGSC0003DMG400006994 Solanum tuberosum
PGSC0003DMG400019832 Solanum tuberosum
PGSC0003DMG400040535 Solanum tuberosum
Phvul.003G173500 Phaseolus vulgaris
Phvul.005G136600 Phaseolus vulgaris
Phvul.010G070500 Phaseolus vulgaris
Phvul.011G073900 Phaseolus vulgaris
Phvul.011G169200 Phaseolus vulgaris
Potri.002G143100 Populus trichocarpa
Potri.009G012000 Populus trichocarpa
Potri.014G059000 Populus trichocarpa
Pp3c18_13660 Physcomitrium patens
Pp3c19_6510 Physcomitrium patens
Pp3c21_9640 Physcomitrium patens
PRCOL_00004383 Prasinoderma coloniale
Prupe.2G136100 Prunus persica
Prupe.6G098200 Prunus persica
Psat5g277560 Pisum sativum
Psat7g002520 Pisum sativum
Psat7g070200 Pisum sativum
Psat7g224000 Pisum sativum
Psat7g234880 Pisum sativum
PSO063G2489 Papaver somniferum
PSO339G2804 Papaver somniferum
PSO384G1802 Papaver somniferum
PSO832G4490 Papaver somniferum
QL01p023081 Quercus lobata
QL04p035900 Quercus lobata
RcHm_v2.0_Chr1g0348731 Rosa chinensis
RcHm_v2.0_Chr1g0375461 Rosa chinensis
RcHm_v2.0_Chr2g0119221 Rosa chinensis
RcHm_v2.0_Chr4g0396411 Rosa chinensis
RcHm_v2.0_Chr5g0059851 Rosa chinensis
RcHm_v2.0_Chr5g0081371 Rosa chinensis
RcHm_v2.0_Chr6g0270021 Rosa chinensis
RcHm_v2.0_Chr6g0270251 Rosa chinensis
RcHm_v2.0_Chr6g0302081 Rosa chinensis
RcHm_v2.0_Chr7g0218951 Rosa chinensis
RcHm_v2.0_Chr7g0240951 Rosa chinensis
Rhsim01G0019700 Rhododendron simsii
Rhsim01G0113600 Rhododendron simsii
Rhsim01G0218100 Rhododendron simsii
Rhsim05G0030200 Rhododendron simsii
Sabra09G0009000 Salix brachista
SalBow5G1051 Salvia bowleyana
SalBow5G4442 Salvia bowleyana
Sc07g0002880 Simmondsia chinensis
Sc07g0002890 Simmondsia chinensis
Sed0001399 Sechium edule
Sed0005555 Sechium edule
SEGI_26250 Sequoiadendron giganteum
SHI13555 Sapria himalayana
SMO119G0386 Selaginella moellendorffii
Solyc03g116990.1 Solanum lycopersicum
Solyc06g010060.1 Solanum lycopersicum
Sopen03g035890 Solanum pennellii
Sopen05g029330 Solanum pennellii
Sopen05g029340 Solanum pennellii
Sopen06g004810 Solanum pennellii
Sp4g27130 Schrenkiella parvula
Sp5g02680 Schrenkiella parvula
Sp6g22050 Schrenkiella parvula
TAR369G0710 Trochodendron aralioides
TAR623G1390 Trochodendron aralioides
TAR624G1274 Trochodendron aralioides
THA.LOC104799494 Tarenaya hassleriana
THA.LOC104802473 Tarenaya hassleriana
THA.LOC104817213 Tarenaya hassleriana
Thecc.01G167600 Theobroma cacao
Thecc.01G385500 Theobroma cacao
Thecc.02G020500 Theobroma cacao
Thecc.04G084000 Theobroma cacao
Thecc.04G129300 Theobroma cacao
Thecc.04G167000 Theobroma cacao
Thecc.07G144900 Theobroma cacao
Thecc.09G258100 Theobroma cacao
Thecc.10G123300 Theobroma cacao
Thecc.10G177400 Theobroma cacao
Thhalv10001704m.g Eutrema salsugineum
Thhalv10006343m.g Eutrema salsugineum
Thhalv10015073m.g Eutrema salsugineum
TPR.G11541 Trifolium pratense
TPR.G15552 Trifolium pratense
TPR.G24357 Trifolium pratense
TPR.G4965 Trifolium pratense
TWI14G1373 Tripterygium wilfordii
TWI31G0162 Tripterygium wilfordii
TWI38G0066 Tripterygium wilfordii
TWI75G1527 Tripterygium wilfordii
unitig_22.g5399 Utricularia gibba
unitig_8.g3839 Utricularia gibba
vmacro08782 Vaccinium macrocarpon
vmacro13457 Vaccinium macrocarpon
VMungo1080G0420 Vigna mungo
VMungo1127G0849 Vigna mungo
Zm00001eb159930 Zea mays
Zm00001eb266430 Zea mays
Zm00001eb355660 Zea mays
Zm00001eb356920 Zea mays

User provided reference genes

Program Settings