Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p21750 Brassica napus
A04p29690 Brassica napus
A09p68490 Brassica napus
A10p01510 Brassica napus
Aa31LG1G9730 Aethionema arabicum
Aa31LG9G1230 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3853 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3854 Anthoceros agrestis
Actinidia03849 Actinidia chinensis
Actinidia03959 Actinidia chinensis
Actinidia32223 Actinidia chinensis
Actinidia37781 Actinidia chinensis
Actinidia37782 Actinidia chinensis
Ah.03g141010 Amaranthus hybridus
Ah.08g213120 Amaranthus hybridus
AL1G12270 Arabidopsis lyrata
AL4G36240 Arabidopsis lyrata
Aqoxy1G00575 Aquilegia oxysepala
Aqoxy5G00743 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1W5D66 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KF9MFH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NH86F6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QKI054 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WED796 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZU5NJG Arachis hypogaea
AT1G02860 Arabidopsis thaliana
AT2G38920 Arabidopsis thaliana
ATR0796G017 Amborella trichopoda
ATR1127G192 Amborella trichopoda
Atru.chr5.1159 Acer truncatum
Atru.chr5.1160 Acer truncatum
Atru.chr8.1260 Acer truncatum
AUR62004074 Chenopodium quinoa
AUR62007586 Chenopodium quinoa
AUR62008649 Chenopodium quinoa
AUR62030241 Chenopodium quinoa
AUR62033119 Chenopodium quinoa
BcaB01g03628 Brassica carinata
BcaB03g15759 Brassica carinata
BcaB06g29064 Brassica carinata
BcaC01g05502 Brassica carinata
BcaC02g07436 Brassica carinata
BcaC05g24588 Brassica carinata
BcaC07g42299 Brassica carinata
BcaC07g42329 Brassica carinata
BcaC07g42411 Brassica carinata
BcaNung06556 Brassica carinata
BcaNung07147 Brassica carinata
BolC3t14962H Brassica oleracea
BolC4t28200H Brassica oleracea
BolC5t28930H Brassica oleracea
BolC6t35987H Brassica oleracea
BolC8t52825H Brassica oleracea
BraA03t11409Z Brassica rapa
BraA04t18434Z Brassica rapa
BraA09t42192Z Brassica rapa
BraA10t42427Z Brassica rapa
C03p25760 Brassica napus
C04p66980 Brassica napus
C05p01480 Brassica napus
C06p09080 Brassica napus
C08p53100 Brassica napus
CAN.G31.6 Capsicum annuum
CAN.G339.15 Capsicum annuum
CANSAT25G0461 Cannabis sativa
CANSAT25G2138 Cannabis sativa
CANSAT64G0473 Cannabis sativa
CARHR002200 Cardamine hirsuta
CARHR133650 Cardamine hirsuta
Carub.0001s0198 Capsella rubella
Carub.0004s2096 Capsella rubella
Ca_09088_v3 Cicer arietinum L.
Ca_09153_v3 Cicer arietinum L.
Ca_10344_v3 Cicer arietinum L.
Cc00_g22220 Coffea canephora
Cc01_g14230 Coffea canephora
Cc06_g07040 Coffea canephora
Cc09_g05500 Coffea canephora
CDE08G1096 Ceratophyllum demersum
Cfa005927 Carpinus fangiana
Cfa005928 Carpinus fangiana
Cfa005929 Carpinus fangiana
Cfa005930 Carpinus fangiana
Cfa020097 Carpinus fangiana
Ciclev10012301m.g Citrus clementina
Ciclev10021143m.g Citrus clementina
Ciclev10024252m.g Citrus clementina
Ciclev10024567m.g Citrus clementina
CiPaw.07G107400 Carya illinoinensis
CiPaw.08G096000 Carya illinoinensis
CiPaw.08G096100 Carya illinoinensis
CiPaw.08G096200 Carya illinoinensis
CiPaw.09G024700 Carya illinoinensis
ClCG09G005930 Citrullus lanatus
ClCG10G017900 Citrullus lanatus
COL.COLO4_23359 Corchorus olitorius
COL.COLO4_29481 Corchorus olitorius
Cpa.g.sc222.5 Carica papaya
Cpa.g.sc9.225 Carica papaya
CsaV3_3G038390 Cucumis sativus L.
CsaV3_5G010580 Cucumis sativus L.
CsaV3_7G029190 Cucumis sativus L.
CSS0005694 Camellia sinensis var. sinensis
CSS0023982 Camellia sinensis var. sinensis
CSS0044567 Camellia sinensis var. sinensis
DCAR_012394 Daucus carota
DCAR_018335 Daucus carota
Dinv11907 Davidia involucrata
Dinv19701 Davidia involucrata
Dinv19702 Davidia involucrata
Duzib106G0687 Durio zibethinus
Duzib128G1106 Durio zibethinus
Duzib133G0198 Durio zibethinus
Duzib138G0204 Durio zibethinus
ECA236G1658 Erigeron canadensis
ECA247G0792 Erigeron canadensis
EL10Ac6g15539 Beta vulgaris
EL10Ac7g17458 Beta vulgaris
Eucgr.A02535 Eucalyptus grandis
Eucgr.H01152 Eucalyptus grandis
FAN04G2225 Fragaria x ananassa
FAN09G4436 Fragaria x ananassa
FAN15G3162 Fragaria x ananassa
FAN20G2125 Fragaria x ananassa
FAN27G1414 Fragaria x ananassa
FAN27G1679 Fragaria x ananassa
FvH4_2g25590 Fragaria vesca
FvH4_6g21121 Fragaria vesca
Glyma.03G214100 Glycine max
Glyma.10G018800 Glycine max
Glyma.19G203000 Glycine max
Glyma.19G210900 Glycine max
Gohir.A11G114766 Gossypium hirsutum
Gohir.A11G315000 Gossypium hirsutum
Gohir.A12G130900 Gossypium hirsutum
Gohir.D10G143550 Gossypium hirsutum
Gohir.D11G119866 Gossypium hirsutum
Gohir.D11G332000 Gossypium hirsutum
Gohir.D12G134800 Gossypium hirsutum
Gorai.007G128500 Gossypium raimondii
Gorai.007G362900 Gossypium raimondii
Gorai.008G145700 Gossypium raimondii
Gorai.011G160400 Gossypium raimondii
GSVIVG01022506001 Vitis vinifera
GSVIVG01027992001 Vitis vinifera
HanXRQChr02g0052801 Helianthus annuus
HanXRQChr06g0163821 Helianthus annuus
HanXRQChr09g0259501 Helianthus annuus
HanXRQChr10g0284511 Helianthus annuus
HanXRQChr14g0453191 Helianthus annuus
HanXRQChr15g0465911 Helianthus annuus
Haze_04914 Corylus avellana
Haze_04916 Corylus avellana
Haze_04917 Corylus avellana
Haze_04918 Corylus avellana
Haze_20094 Corylus avellana
Hma1.2p1_0127F.1_g059700 Hydrangea macrophylla
Hma1.2p1_0209F.1_g088470 Hydrangea macrophylla
HPP92_000410 Vanilla planifolia
HPP92_013931 Vanilla planifolia
Hund05418 Selenicereus undatus
Hund18129 Selenicereus undatus
Hund18130 Selenicereus undatus
Lalb_Chr03g0034861 Lupinus albus
Lalb_Chr06g0163451 Lupinus albus
Lalb_Chr15g0078541 Lupinus albus
Lalb_Chr20g0111181 Lupinus albus
Lalb_Chr21g0306821 Lupinus albus
Lalb_Chr25g0287811 Lupinus albus
Lj1A26T27 Lonicera japonica
Lj1g0004377 Lotus japonicus
Lj1g0021773 Lotus japonicus
Lj2A1192T48 Lonicera japonica
Lj2C1192G10 Lonicera japonica
Lj5g0008276 Lotus japonicus
Lsat_1_v5_gn_1_18621 Lactuca sativa
Lsat_1_v5_gn_2_102081 Lactuca sativa
Lsat_1_v5_gn_3_85201 Lactuca sativa
Lsat_1_v5_gn_3_94600 Lactuca sativa
Lsat_1_v5_gn_4_150201 Lactuca sativa
Lsat_1_v5_gn_4_168200 Lactuca sativa
Lsat_1_v5_gn_4_175661 Lactuca sativa
Lsat_1_v5_gn_5_99060 Lactuca sativa
Lsat_1_v5_gn_6_31981 Lactuca sativa
Lsat_1_v5_gn_6_34421 Lactuca sativa
Lsat_1_v5_gn_6_79980 Lactuca sativa
Lsat_1_v5_gn_8_162820 Lactuca sativa
Lsat_1_v5_gn_8_53481 Lactuca sativa
Lsat_1_v5_gn_9_22861 Lactuca sativa
Lsat_1_v5_gn_9_5860 Lactuca sativa
Lsat_1_v5_gn_9_5901 Lactuca sativa
Manes.01G218000 Manihot esculenta
Manes.05G063000 Manihot esculenta
Manes.09G041300 Manihot esculenta
Mapoly0044s0127 Marchantia polymorpha
MBI11_g24563_MAGBIO Magnolia biondii
MBI19_g13199_MAGBIO Magnolia biondii
MBI19_g26909_MAGBIO Magnolia biondii
MCO08G222 Micromonas commoda
MD03G1286600 Malus domestica
MD03G1286800 Malus domestica
MD03G1286900 Malus domestica
MD03G1287000 Malus domestica
MD11G1313200 Malus domestica
MD11G1313600 Malus domestica
MD12G1046800 Malus domestica
MD14G1045700 Malus domestica
Medtr1g088660 Medicago truncatula
Medtr7g107060 Medicago truncatula
Medtr7g108840 Medicago truncatula
Medtr8g058547 Medicago truncatula
Medtr8g058603 Medicago truncatula
Medtr8g058625 Medicago truncatula
MELO3C009583.2 Cucumis melo
MELO3C016008.2 Cucumis melo
Migut.D00208 Erythranthe guttata
Migut.L01856 Erythranthe guttata
MSTRG.18161 Avicennia marina
MSTRG.26570 Avicennia marina
Nitab4.5_0000117g0040 Nicotiana tabacum
Nitab4.5_0000824g0020 Nicotiana tabacum
Nitab4.5_0002469g0090 Nicotiana tabacum
Nitab4.5_0003545g0030 Nicotiana tabacum
Nn3g21463 Nelumbo nucifera
Nn4g25814 Nelumbo nucifera
Oeu008933.1 Olea europaea
Oeu013914.1 Olea europaea
Oeu032108.1 Olea europaea
Oeu054125.1 Olea europaea
Os03g0650900 Oryza sativa ssp. japonica
Os07g0673200 Oryza sativa ssp. japonica
Peaxi162Scf00001g00481 Petunia axillaris
Peaxi162Scf00210g00018 Petunia axillaris
PGR004G1110 Punica granatum
PGR004G1584 Punica granatum
PGR119G0803 Punica granatum
PGR119G1987 Punica granatum
PGSC0003DMG400011399 Solanum tuberosum
PGSC0003DMG400022866 Solanum tuberosum
Phvul.001G199100 Phaseolus vulgaris
Phvul.001G206800 Phaseolus vulgaris
Phvul.007G143600 Phaseolus vulgaris
Potri.002G205400 Populus trichocarpa
Potri.006G198600 Populus trichocarpa
Potri.014G130300 Populus trichocarpa
Potri.016G064600 Populus trichocarpa
Pp3c13_8480 Physcomitrium patens
Pp3c26_11740 Physcomitrium patens
Pp3c4_30040 Physcomitrium patens
Prupe.7G088600 Prunus persica
Prupe.8G260000 Prunus persica
Psat3g021000 Pisum sativum
Psat3g026120 Pisum sativum
Psat6g165040 Pisum sativum
PSO017G3121 Papaver somniferum
PSO063G5765 Papaver somniferum
PSO135G0342 Papaver somniferum
PSO135G0586 Papaver somniferum
PSO135G1055 Papaver somniferum
PSO170G4926 Papaver somniferum
PSO170G6730 Papaver somniferum
PSO339G1430 Papaver somniferum
PSO339G1713 Papaver somniferum
PSO339G3880 Papaver somniferum
PSO339G5257 Papaver somniferum
PSO384G3883 Papaver somniferum
PSO675G3968 Papaver somniferum
QL04p042125 Quercus lobata
QL05p049288 Quercus lobata
QL07p025978 Quercus lobata
QL07p025987 Quercus lobata
QL12p027414 Quercus lobata
RcHm_v2.0_Chr2g0112121 Rosa chinensis
RcHm_v2.0_Chr3g0477541 Rosa chinensis
RcHm_v2.0_Chr6g0293831 Rosa chinensis
Rhsim03G0057900 Rhododendron simsii
Rhsim13G0011200 Rhododendron simsii
Sabra02G0153900 Salix brachista
Sabra06G0152700 Salix brachista
Sabra14G0096800 Salix brachista
Sabra14G0096900 Salix brachista
Sabra16G0066500 Salix brachista
Sc05g0003950 Simmondsia chinensis
Sc13g0009160 Simmondsia chinensis
Sed0018857 Sechium edule
Sed0026520 Sechium edule
Sed0026755 Sechium edule
SEGI_06188 Sequoiadendron giganteum
SEGI_24272 Sequoiadendron giganteum
SEGI_33078 Sequoiadendron giganteum
SEGI_33227 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01400 Striga asiatica
SGA_v2.0_scaffold41G15776 Striga asiatica
SMO114G0132 Selaginella moellendorffii
SMO117G0007 Selaginella moellendorffii
Solyc09g075040.3 Solanum lycopersicum
Solyc11g045230.2 Solanum lycopersicum
Sopen09g029860 Solanum pennellii
Sopen11g020700 Solanum pennellii
Sp1g01840 Schrenkiella parvula
Sp1g01850 Schrenkiella parvula
Sp4g21300 Schrenkiella parvula
TAR365G0118 Trochodendron aralioides
TAR623G0524 Trochodendron aralioides
TAR633G1139 Trochodendron aralioides
TAR636G3477 Trochodendron aralioides
THA.LOC104798480 Tarenaya hassleriana
THA.LOC104825246 Tarenaya hassleriana
THA.LOC104825972 Tarenaya hassleriana
Thecc.01G298800 Theobroma cacao
Thecc.05G183500 Theobroma cacao
Thhalv10008149m.g Eutrema salsugineum
Thhalv10016996m.g Eutrema salsugineum
TPR.G14398 Trifolium pratense
TPR.G33957 Trifolium pratense
TPR.G9619 Trifolium pratense
TWI14G1425 Tripterygium wilfordii
TWI23G0303 Tripterygium wilfordii
TWI59G0306 Tripterygium wilfordii
TWI74G0585 Tripterygium wilfordii
unitig_0.g660 Utricularia gibba
vmacro02458 Vaccinium macrocarpon
vmacro07521 Vaccinium macrocarpon
vmacro07526 Vaccinium macrocarpon
VMungo0720G1238 Vigna mungo
VMungo1383G0742 Vigna mungo
VMungo1383G1557 Vigna mungo
Zm00001eb052950 Zea mays

User provided reference genes

Program Settings