Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p38690 Brassica napus
A03p01670 Brassica napus
A03p34120 Brassica napus
Aa31LG11G5290 Aethionema arabicum
Aa31LG11G9380 Aethionema arabicum
Aa31LG5G15960 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4107 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.784 Anthoceros agrestis
Actinidia05688 Actinidia chinensis
Actinidia06723 Actinidia chinensis
Actinidia18554 Actinidia chinensis
Actinidia23650 Actinidia chinensis
Actinidia38888 Actinidia chinensis
Ah.04g160450 Amaranthus hybridus
Ah.06g189620 Amaranthus hybridus
Ah.06g189630 Amaranthus hybridus
AL1G38560 Arabidopsis lyrata
AL1G55960 Arabidopsis lyrata
AL3G15980 Arabidopsis lyrata
AL6G14040 Arabidopsis lyrata
AL6G39400 Arabidopsis lyrata
Aqoxy195s004 Aquilegia oxysepala
Aqoxy1G01084 Aquilegia oxysepala
Aqoxy5G00704 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6BI416 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F394NJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0NCP1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LR7J2X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UDP5HN Arachis hypogaea
AT3G05420 Arabidopsis thaliana
AT5G04420 Arabidopsis thaliana
AT5G27630 Arabidopsis thaliana
ATR0706G044 Amborella trichopoda
ATR0723G064 Amborella trichopoda
Atru.chr1.1339 Acer truncatum
Atru.chr12.898 Acer truncatum
Atru.chr12.899 Acer truncatum
Atru.chr2.15 Acer truncatum
AUR62000789 Chenopodium quinoa
AUR62005178 Chenopodium quinoa
AUR62041266 Chenopodium quinoa
AUR62041798 Chenopodium quinoa
BcaB01g05897 Brassica carinata
BcaB04g19268 Brassica carinata
BcaC03g17794 Brassica carinata
BcaC05g30123 Brassica carinata
BcaC05g30125 Brassica carinata
BcaC09g47824 Brassica carinata
BcaC09g47826 Brassica carinata
BcaNung04622 Brassica carinata
BNapus_Darmor_BZH_scaffold_114p00080 Brassica napus
BolC1t05695H Brassica oleracea
BolC2t11887H Brassica oleracea
BolC3t12757H Brassica oleracea
BolC3t16432H Brassica oleracea
BolC5t34841H Brassica oleracea
BolC6t37322H Brassica oleracea
BraA02t08845Z Brassica rapa
BraA03t09542Z Brassica rapa
BraA03t12585Z Brassica rapa
BraA05t23031Z Brassica rapa
BraSC132t45504Z Brassica rapa
C02p58200 Brassica napus
C03p02040 Brassica napus
C03p41510 Brassica napus
C05p61810 Brassica napus
C06p21410 Brassica napus
CAN.G1034.50 Capsicum annuum
CAN.G135.23 Capsicum annuum
CAN.G1652.17 Capsicum annuum
CAN.G1652.18 Capsicum annuum
CANSAT54G2339 Cannabis sativa
CANSAT56G2729 Cannabis sativa
CARHR079760 Cardamine hirsuta
CARHR186160 Cardamine hirsuta
CARHR208890 Cardamine hirsuta
Carub.0003s0470 Capsella rubella
Carub.0006s0336 Capsella rubella
Carub.0006s2496 Capsella rubella
Ca_05808_v3 Cicer arietinum L.
Ca_10122_v3 Cicer arietinum L.
Ca_10452_v3 Cicer arietinum L.
Ca_11544_v3 Cicer arietinum L.
CBR_g49333 Chara braunii
Cc00_g08140 Coffea canephora
Cc00_g10190 Coffea canephora
Cc00_g26630 Coffea canephora
Cc02_g10600 Coffea canephora
Cc02_g31050 Coffea canephora
CDE01G0048 Ceratophyllum demersum
CDE02G3794 Ceratophyllum demersum
CDE08G1115 Ceratophyllum demersum
CDE12G0037 Ceratophyllum demersum
Cfa006613 Carpinus fangiana
Ciclev10000504m.g Citrus clementina
Ciclev10031292m.g Citrus clementina
CiPaw.01G265600 Carya illinoinensis
CiPaw.07G020200 Carya illinoinensis
ClCG02G015540 Citrullus lanatus
ClCG08G007910 Citrullus lanatus
COL.COLO4_10493 Corchorus olitorius
COL.COLO4_32891 Corchorus olitorius
Cpa.g.sc48.78 Carica papaya
Cpa.g.sc706.5 Carica papaya
Cre02.g074650 Chlamydomonas reinhardtii
CsaV3_2G006540 Cucumis sativus L.
CsaV3_2G021010 Cucumis sativus L.
CSS0017275 Camellia sinensis var. sinensis
CSS0018144 Camellia sinensis var. sinensis
CSS0025432 Camellia sinensis var. sinensis
CSS0049898 Camellia sinensis var. sinensis
DCAR_006390 Daucus carota
DCAR_029395 Daucus carota
Dinv30786 Davidia involucrata
Dinv31256 Davidia involucrata
Dinv31257 Davidia involucrata
Dinv36364 Davidia involucrata
Dinv36365 Davidia involucrata
Dinv40308 Davidia involucrata
Duzib106G0557 Durio zibethinus
Duzib114G0923 Durio zibethinus
Duzib128G1578 Durio zibethinus
Duzib177G0730 Durio zibethinus
ECA233G4897 Erigeron canadensis
ECA236G0157 Erigeron canadensis
ECA238G1049 Erigeron canadensis
EL10Ac4g08621 Beta vulgaris
EL10Ac4g09377 Beta vulgaris
Eucgr.B01931 Eucalyptus grandis
Eucgr.G02738 Eucalyptus grandis
Eucgr.L02127 Eucalyptus grandis
Eucgr.L02466 Eucalyptus grandis
FAN01G2662 Fragaria x ananassa
FAN02G2722 Fragaria x ananassa
FAN03G0121 Fragaria x ananassa
FAN05G3662 Fragaria x ananassa
FAN06G0232 Fragaria x ananassa
FAN09G3209 Fragaria x ananassa
FAN10G1487 Fragaria x ananassa
FvH4_6g06301 Fragaria vesca
FvH4_7g06590 Fragaria vesca
Glyma.03G236500 Glycine max
Glyma.07G154200 Glycine max
Glyma.10G198000 Glycine max
Glyma.19G234400 Glycine max
Glyma.20G191900 Glycine max
Glyma.20G235500 Glycine max
Gohir.A05G291400 Gossypium hirsutum
Gohir.A11G266400 Gossypium hirsutum
Gohir.A11G295100 Gossypium hirsutum
Gohir.A13G108500 Gossypium hirsutum
Gohir.A13G174200 Gossypium hirsutum
Gohir.D05G292500 Gossypium hirsutum
Gohir.D11G276700 Gossypium hirsutum
Gohir.D11G309900 Gossypium hirsutum
Gohir.D13G111400 Gossypium hirsutum
Gohir.D13G179900 Gossypium hirsutum
Gorai.007G298800 Gossypium raimondii
Gorai.007G342000 Gossypium raimondii
Gorai.009G308900 Gossypium raimondii
Gorai.013G125100 Gossypium raimondii
Gorai.013G205300 Gossypium raimondii
GSVIVG01016168001 Vitis vinifera
GSVIVG01031116001 Vitis vinifera
HanXRQChr07g0189071 Helianthus annuus
HanXRQChr08g0218271 Helianthus annuus
HanXRQChr11g0339451 Helianthus annuus
HanXRQChr14g0433311 Helianthus annuus
HanXRQChr14g0455821 Helianthus annuus
Haze_04162 Corylus avellana
Haze_16773 Corylus avellana
Hma1.2p1_0208F.1_g088270 Hydrangea macrophylla
Hma1.2p1_1334F.1_g276250 Hydrangea macrophylla
Hma1.2p1_1374F.1_g278930 Hydrangea macrophylla
HPP92_011343 Vanilla planifolia
HPP92_020824 Vanilla planifolia
Hund06762 Selenicereus undatus
Hund07087 Selenicereus undatus
Hund07088 Selenicereus undatus
Lalb_Chr02g0148181 Lupinus albus
Lalb_Chr02g0151091 Lupinus albus
Lalb_Chr04g0260691 Lupinus albus
Lalb_Chr06g0169971 Lupinus albus
Lalb_Chr15g0077291 Lupinus albus
Lj2A24T64 Lonicera japonica
Lj3A936G52 Lonicera japonica
Lj5A256T13 Lonicera japonica
Lj5A258T11 Lonicera japonica
Lj5A442G8 Lonicera japonica
Lj5g0022587 Lotus japonicus
Lj5g0027868 Lotus japonicus
Lsat_1_v5_gn_2_103340 Lactuca sativa
Lsat_1_v5_gn_8_17681 Lactuca sativa
Lsat_1_v5_gn_9_10300 Lactuca sativa
Lsat_1_v5_gn_9_87501 Lactuca sativa
Manes.08G119300 Manihot esculenta
Manes.09G169100 Manihot esculenta
Manes.10G052700 Manihot esculenta
Mapoly0004s0054 Marchantia polymorpha
MBI17_g25737_MAGBIO Magnolia biondii
MCO01G765 Micromonas commoda
MCO08G303 Micromonas commoda
MD02G1242500 Malus domestica
MD04G1202500 Malus domestica
MD07G1074000 Malus domestica
MD12G1216500 Malus domestica
Medtr1g090740 Medicago truncatula
Medtr7g113200 Medicago truncatula
MELO3C004231.2 Cucumis melo
MELO3C019846.2 Cucumis melo
Migut.F01684 Erythranthe guttata
Migut.N01976 Erythranthe guttata
Migut.N01989 Erythranthe guttata
MSTRG.27988 Avicennia marina
MSTRG.8119 Avicennia marina
Nitab4.5_0002144g0040 Nicotiana tabacum
Nitab4.5_0002344g0120 Nicotiana tabacum
Nitab4.5_0002432g0050 Nicotiana tabacum
Nitab4.5_0004047g0020 Nicotiana tabacum
Nitab4.5_0004754g0030 Nicotiana tabacum
Nitab4.5_0013007g0020 Nicotiana tabacum
Nn3g21409 Nelumbo nucifera
Nn5g30054 Nelumbo nucifera
Nn6g35207 Nelumbo nucifera
Oeu012110.2 Olea europaea
Oeu016291.1 Olea europaea
Oeu020840.1 Olea europaea
Os02g0822800 Oryza sativa ssp. japonica
Os03g0835600 Oryza sativa ssp. japonica
Os12g0540800 Oryza sativa ssp. japonica
Peaxi162Scf00037g00923 Petunia axillaris
Peaxi162Scf00409g00217 Petunia axillaris
PGR031G2322 Punica granatum
PGR083G1814 Punica granatum
PGR142G0322 Punica granatum
PGSC0003DMG400024701 Solanum tuberosum
PGSC0003DMG400027336 Solanum tuberosum
Phvul.006G090700 Phaseolus vulgaris
Phvul.007G140800 Phaseolus vulgaris
Potri.005G026900 Populus trichocarpa
Potri.008G030901 Populus trichocarpa
Potri.008G031200 Populus trichocarpa
Potri.010G230300 Populus trichocarpa
Potri.013G018800 Populus trichocarpa
Pp3c14_17400 Physcomitrium patens
Pp3c14_17403 Physcomitrium patens
Pp3c17_21380 Physcomitrium patens
PRCOL_00002287 Prasinoderma coloniale
PRCOL_00004920 Prasinoderma coloniale
Prupe.2G091900 Prunus persica
Prupe.6G322800 Prunus persica
Psat0s2790g0040 Pisum sativum
Psat0s3231g0040 Pisum sativum
Psat0s3292g0040 Pisum sativum
Psat0s3292g0120 Pisum sativum
Psat0ss777g0160 Pisum sativum
Psat0ss777g0240 Pisum sativum
Psat1g148880 Pisum sativum
Psat1g158320 Pisum sativum
Psat5g193320 Pisum sativum
Psat5g193520 Pisum sativum
Psat6g173160 Pisum sativum
PSO170G2566 Papaver somniferum
PSO210G0810 Papaver somniferum
PSO210G3549 Papaver somniferum
PSO339G2160 Papaver somniferum
PSO339G5782 Papaver somniferum
PSO832G3296 Papaver somniferum
QL03p012727 Quercus lobata
QL08p053120 Quercus lobata
RcHm_v2.0_Chr1g0335251 Rosa chinensis
RcHm_v2.0_Chr3g0455341 Rosa chinensis
Rhsim07G0183300 Rhododendron simsii
Rhsim09G0145600 Rhododendron simsii
Sabra05G0032200 Salix brachista
Sabra08G0020600 Salix brachista
Sabra10G0178700 Salix brachista
Sabra13G0021400 Salix brachista
Sc09g0003040 Simmondsia chinensis
Sc20g0001540 Simmondsia chinensis
Sed0004131 Sechium edule
Sed0009747 Sechium edule
Sed0022056 Sechium edule
SEGI_02184 Sequoiadendron giganteum
SEGI_13850 Sequoiadendron giganteum
SEGI_30119 Sequoiadendron giganteum
SEGI_39329 Sequoiadendron giganteum
SEGI_40474 Sequoiadendron giganteum
SGA_v2.0_scaffold176G39381 Striga asiatica
SGA_v2.0_scaffold80G25790 Striga asiatica
SMO197G0020 Selaginella moellendorffii
SMO272G0035 Selaginella moellendorffii
SMO339G0040 Selaginella moellendorffii
SMO351G0633 Selaginella moellendorffii
Solyc01g099350.3 Solanum lycopersicum
Solyc11g007960.2 Solanum lycopersicum
Sopen01g042910 Solanum pennellii
Sopen11g003830 Solanum pennellii
Sp2g20800 Schrenkiella parvula
Sp3g04280 Schrenkiella parvula
Sp6g38320 Schrenkiella parvula
TAR365G1066 Trochodendron aralioides
TAR365G1154 Trochodendron aralioides
TAR623G1553 Trochodendron aralioides
TAR633G1242 Trochodendron aralioides
THA.LOC104802801 Tarenaya hassleriana
THA.LOC104821718 Tarenaya hassleriana
THA.LOC104826971 Tarenaya hassleriana
Thecc.05G311100 Theobroma cacao
Thecc.10G089100 Theobroma cacao
Thhalv10003780m.g Eutrema salsugineum
Thhalv10013283m.g Eutrema salsugineum
Thhalv10020218m.g Eutrema salsugineum
TPR.G33177 Trifolium pratense
TPR.G37727 Trifolium pratense
TWI12G0524 Tripterygium wilfordii
TWI38G2221 Tripterygium wilfordii
TWI56G1154 Tripterygium wilfordii
TWI63G1814 Tripterygium wilfordii
unitig_26.g9464 Utricularia gibba
unitig_746.g26860 Utricularia gibba
vmacro04982 Vaccinium macrocarpon
vmacro10260 Vaccinium macrocarpon
VMungo0540G2300 Vigna mungo
VMungo0720G2362 Vigna mungo
Zm00001eb063690 Zea mays
Zm00001eb137610 Zea mays
Zm00001eb190990 Zea mays
Zm00001eb211150 Zea mays
Zm00001eb385790 Zea mays

User provided reference genes

Program Settings