Gene: AT3G05420
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G05420
- Transcript Identifier AT3G05420.2
- Gene Type Coding gene
- Location Chr3 : 1561880-1567047 : positive
Gene Family Information
- ID HOM05D001137
- #Genes/#Species 543/100
- Phylogenetic origin
- ID ORTHO05D001967
- #Genes/#Species 332/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G05420.2
- symbol ACBP4
- Alias AtACBP4
- uniprot Q9MA55
Descriptions
- Description acyl-CoA binding protein 4
- Computational description acyl-CoA binding protein 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 5 (TAIR:AT5G27630.1); Has 12542 Blast hits to 6987 proteins in 469 species: Archae - 21; Bacteria - 614; Metazoa - 5387; Fungi - 1265; Plants - 2730; Viruses - 3; Other Eukaryotes - 2522 (source: NCBI BLink).
- Computational description acyl-CoA binding protein 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 5 (TAIR:AT5G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006869 | IDA IBA | Gene Ontology | lipid transport | 1 2 |
| GO:0009416 | TAS | Gene Ontology | response to light stimulus | 3 |
| GO:0009753 | IEP | Gene Ontology | response to jasmonic acid | 4 |
| GO:0009723 | IEP | Gene Ontology | response to ethylene | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0000062 | IEA | GOA Database | fatty-acyl-CoA binding | |
| GO:0000062 | IDA IBA | Gene Ontology | fatty-acyl-CoA binding | 1 2 |
| GO:0000062 | IEA | InterPro | fatty-acyl-CoA binding | |
| GO:0008289 | IEA | GOA Database | lipid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IDA, HDA IBA | Gene Ontology | cytosol | 2 5 6 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 4 |
| GO:0005634 | IDA | Gene Ontology | nucleus | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |