Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22240 Brassica napus
A04p30300 Brassica napus
A05p06670 Brassica napus
A07p39090 Brassica napus
Aa31LG4G3380 Aethionema arabicum
Aa31LG5G19920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.855 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1576 Anthoceros agrestis
Actinidia02929 Actinidia chinensis
Actinidia08541 Actinidia chinensis
Actinidia11278 Actinidia chinensis
Actinidia23672 Actinidia chinensis
Actinidia26489 Actinidia chinensis
Actinidia33771 Actinidia chinensis
Actinidia36855 Actinidia chinensis
Ah.10g036970 Amaranthus hybridus
Ah.16g102550 Amaranthus hybridus
AL2G32860 Arabidopsis lyrata
AL4G37200 Arabidopsis lyrata
Aqoxy1G00872 Aquilegia oxysepala
Aqoxy2G02306 Aquilegia oxysepala
Aqoxy7G02957 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.06QP13 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.59KA91 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8C6B4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G3162F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GBG79Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NME7KH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S3V5ZL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZDGJ2D Arachis hypogaea
AT1G73110 Arabidopsis thaliana
AT2G39730 Arabidopsis thaliana
ATR0559G057 Amborella trichopoda
ATR0580G322 Amborella trichopoda
Atru.chr1.2752 Acer truncatum
Atru.chr12.395 Acer truncatum
Atru.chr12.402 Acer truncatum
Atru.chr12.405 Acer truncatum
Atru.chr8.2019 Acer truncatum
Atru.chr8.2020 Acer truncatum
Atru.chr8.2029 Acer truncatum
AUR62012129 Chenopodium quinoa
AUR62022403 Chenopodium quinoa
AUR62040707 Chenopodium quinoa
AUR62043543 Chenopodium quinoa
BcaB02g09093 Brassica carinata
BcaB06g29103 Brassica carinata
BcaC01g05474 Brassica carinata
BcaC02g07432 Brassica carinata
BcaC02g07433 Brassica carinata
BcaC02g12105 Brassica carinata
BolC3t15018H Brassica oleracea
BolC4t22397H Brassica oleracea
BolC4t28251H Brassica oleracea
BolC6t39769H Brassica oleracea
BraA03t11455Z Brassica rapa
BraA04t18477Z Brassica rapa
BraA05t19634Z Brassica rapa
BraA07t31460Z Brassica rapa
C03p26310 Brassica napus
C04p07800 Brassica napus
C04p67540 Brassica napus
C06p47300 Brassica napus
CAN.G1008.24 Capsicum annuum
CAN.G229.15 Capsicum annuum
CAN.G324.20 Capsicum annuum
CAN.G92.11 Capsicum annuum
CANSAT35G0439 Cannabis sativa
CANSAT54G1772 Cannabis sativa
CANSAT56G4540 Cannabis sativa
CANSAT64G0106 Cannabis sativa
CARHR066080 Cardamine hirsuta
CARHR134580 Cardamine hirsuta
Carub.0002s1988 Capsella rubella
Carub.0004s2179 Capsella rubella
Ca_01003_v3 Cicer arietinum L.
Ca_05872_v3 Cicer arietinum L.
Ca_08178_v3 Cicer arietinum L.
Cc02_g07500 Coffea canephora
Cc04_g05490 Coffea canephora
Cc04_g14500 Coffea canephora
CDE05G3594 Ceratophyllum demersum
CDE06G1132 Ceratophyllum demersum
CDE06G2523 Ceratophyllum demersum
CDE07G0779 Ceratophyllum demersum
CDE09G0450 Ceratophyllum demersum
CDE10G0128 Ceratophyllum demersum
Cfa011552 Carpinus fangiana
Ciclev10013735m.g Citrus clementina
Ciclev10025695m.g Citrus clementina
Ciclev10031443m.g Citrus clementina
CiPaw.01G290700 Carya illinoinensis
CiPaw.02G024200 Carya illinoinensis
CiPaw.02G186000 Carya illinoinensis
CiPaw.09G197300 Carya illinoinensis
CiPaw.10G147600 Carya illinoinensis
ClCG02G019910 Citrullus lanatus
ClCG07G003520 Citrullus lanatus
ClCG09G003540 Citrullus lanatus
ClCG11G006730 Citrullus lanatus
COL.COLO4_25477 Corchorus olitorius
COL.COLO4_30894 Corchorus olitorius
Cpa.g.sc1.437 Carica papaya
Cpa.g.sc228.3 Carica papaya
Cpa.g.sc710.3 Carica papaya
Cpa.g.sc81.100 Carica papaya
Cpa.g.sc953.1 Carica papaya
Cre04.g229300 Chlamydomonas reinhardtii
Cre17.g718950 Chlamydomonas reinhardtii
CsaV3_5G008270 Cucumis sativus L.
CsaV3_6G001300 Cucumis sativus L.
CsaV3_6G016610 Cucumis sativus L.
CsaV3_7G009990 Cucumis sativus L.
CsaV3_7G031660 Cucumis sativus L.
CSS0004125 Camellia sinensis var. sinensis
CSS0005775 Camellia sinensis var. sinensis
CSS0014740 Camellia sinensis var. sinensis
CSS0033329 Camellia sinensis var. sinensis
CSS0033885 Camellia sinensis var. sinensis
CSS0049545 Camellia sinensis var. sinensis
DCAR_005945 Daucus carota
DCAR_007430 Daucus carota
DCAR_011723 Daucus carota
DCAR_012116 Daucus carota
DCAR_025616 Daucus carota
Dinv03371 Davidia involucrata
Dinv06759 Davidia involucrata
Dinv23256 Davidia involucrata
Dinv34282 Davidia involucrata
Dinv34284 Davidia involucrata
Dinv35568 Davidia involucrata
Dinv35569 Davidia involucrata
Duzib093G1516 Durio zibethinus
Duzib106G1627 Durio zibethinus
Duzib114G0514 Durio zibethinus
Duzib160G0460 Durio zibethinus
ECA232G4132 Erigeron canadensis
ECA238G4726 Erigeron canadensis
EL10Ac2g04711 Beta vulgaris
EL10Ac8g19451 Beta vulgaris
Eucgr.B02310 Eucalyptus grandis
Eucgr.J01234 Eucalyptus grandis
Eucgr.J02030 Eucalyptus grandis
Eucgr.J03141 Eucalyptus grandis
Eucgr.K03065 Eucalyptus grandis
Eucgr.L03031 Eucalyptus grandis
FAN01G0222 Fragaria x ananassa
FAN01G0358 Fragaria x ananassa
FAN02G3407 Fragaria x ananassa
FAN03G3441 Fragaria x ananassa
FAN05G1198 Fragaria x ananassa
FAN05G3443 Fragaria x ananassa
FAN06G1654 Fragaria x ananassa
FAN06G3747 Fragaria x ananassa
FAN09G2518 Fragaria x ananassa
FAN10G3238 Fragaria x ananassa
FAN11G3524 Fragaria x ananassa
FAN14G3137 Fragaria x ananassa
FAN14G5604 Fragaria x ananassa
FAN21G0126 Fragaria x ananassa
FAN25G1728 Fragaria x ananassa
FvH4_3g36920 Fragaria vesca
FvH4_6g13160 Fragaria vesca
FvH4_6g27970 Fragaria vesca
FvH4_7g22910 Fragaria vesca
Glyma.02G249600 Glycine max
Glyma.03G068100 Glycine max
Glyma.11G221000 Glycine max
Glyma.13G371900 Glycine max
Glyma.14G067000 Glycine max
Glyma.18G036400 Glycine max
Gohir.A01G143500 Gossypium hirsutum
Gohir.A04G084300 Gossypium hirsutum
Gohir.A05G142900 Gossypium hirsutum
Gohir.A06G066200 Gossypium hirsutum
Gohir.A06G166200 Gossypium hirsutum
Gohir.A10G221700 Gossypium hirsutum
Gohir.D04G123100 Gossypium hirsutum
Gohir.D05G145300 Gossypium hirsutum
Gohir.D06G171700 Gossypium hirsutum
Gohir.D10G234000 Gossypium hirsutum
Gorai.009G149200 Gossypium raimondii
Gorai.010G200600 Gossypium raimondii
Gorai.011G267600 Gossypium raimondii
Gorai.012G106000 Gossypium raimondii
GSVIVG01016062001 Vitis vinifera
GSVIVG01016501001 Vitis vinifera
GSVIVG01024910001 Vitis vinifera
GSVIVG01034123001 Vitis vinifera
HanXRQChr05g0136941 Helianthus annuus
HanXRQChr07g0201601 Helianthus annuus
HanXRQChr08g0235911 Helianthus annuus
HanXRQChr09g0250121 Helianthus annuus
HanXRQChr10g0312801 Helianthus annuus
HanXRQChr15g0496591 Helianthus annuus
Haze_15247 Corylus avellana
Haze_17109 Corylus avellana
Haze_20837 Corylus avellana
Haze_24157 Corylus avellana
Hma1.2p1_0338F.1_g129610 Hydrangea macrophylla
Hma1.2p1_0757F.1_g213480 Hydrangea macrophylla
Hma1.2p1_0998F.1_g246020 Hydrangea macrophylla
Hma1.2p1_0998F.1_g246030 Hydrangea macrophylla
Hma1.2p1_1083F.1_g255270 Hydrangea macrophylla
HPP92_010777 Vanilla planifolia
HPP92_018133 Vanilla planifolia
HPP92_018134 Vanilla planifolia
Hund13790 Selenicereus undatus
Hund15963 Selenicereus undatus
Hund22384 Selenicereus undatus
Lalb_Chr04g0251061 Lupinus albus
Lalb_Chr10g0104701 Lupinus albus
Lalb_Chr18g0053131 Lupinus albus
Lalb_Chr20g0116841 Lupinus albus
Lalb_Chr24g0392761 Lupinus albus
Lj2A90T52 Lonicera japonica
Lj3g0001514 Lotus japonicus
Lj3g0023398 Lotus japonicus
Lj6g0024776 Lotus japonicus
Lj8A80G67 Lonicera japonica
Lj9C489T7 Lonicera japonica
LjContig00141g0007763 Lotus japonicus
Lju2578A0T35 Lonicera japonica
Lsat_1_v5_gn_1_41540 Lactuca sativa
Lsat_1_v5_gn_2_118741 Lactuca sativa
Lsat_1_v5_gn_5_153800 Lactuca sativa
Lsat_1_v5_gn_5_9161 Lactuca sativa
Lsat_1_v5_gn_9_64940 Lactuca sativa
Manes.09G095000 Manihot esculenta
Manes.10G027600 Manihot esculenta
Manes.11G071500 Manihot esculenta
Mapoly0022s0132 Marchantia polymorpha
Mapoly0031s0065 Marchantia polymorpha
MBI05_g35194_MAGBIO Magnolia biondii
MBI14_g11607_MAGBIO Magnolia biondii
MBI16_g44475_MAGBIO Magnolia biondii
MBI17_g17487_MAGBIO Magnolia biondii
MCO05G437 Micromonas commoda
MCO07G508 Micromonas commoda
MCO10G114 Micromonas commoda
MD01G1137900 Malus domestica
MD03G1086300 Malus domestica
MD04G1134100 Malus domestica
MD07G1202200 Malus domestica
MD07G1202400 Malus domestica
MD09G1230800 Malus domestica
MD11G1095300 Malus domestica
Medtr2g105480 Medicago truncatula
Medtr3g068030 Medicago truncatula
Medtr4g021210 Medicago truncatula
Medtr5g080450 Medicago truncatula
MELO3C008231.2 Cucumis melo
MELO3C023491.2 Cucumis melo
MELO3C023879.2 Cucumis melo
MELO3C025892.2 Cucumis melo
Migut.F00758 Erythranthe guttata
Migut.I00643 Erythranthe guttata
MSTRG.22831 Avicennia marina
MSTRG.8269 Avicennia marina
Nitab4.5_0000527g0230 Nicotiana tabacum
Nitab4.5_0000722g0100 Nicotiana tabacum
Nitab4.5_0002170g0100 Nicotiana tabacum
Nitab4.5_0004194g0110 Nicotiana tabacum
Nitab4.5_0004475g0020 Nicotiana tabacum
Nitab4.5_0007293g0030 Nicotiana tabacum
Nitab4.5_0008097g0030 Nicotiana tabacum
Nitab4.5_0023724g0010 Nicotiana tabacum
Nn1g01589 Nelumbo nucifera
Nn2g11205 Nelumbo nucifera
Nn2g13453 Nelumbo nucifera
Oeu006880.1 Olea europaea
Oeu009486.1 Olea europaea
Oeu031349.1 Olea europaea
Oeu039036.1 Olea europaea
Os04g0658300 Oryza sativa ssp. japonica
Os11g0707050 Oryza sativa ssp. japonica
Os11g0707100 Oryza sativa ssp. japonica
Peaxi162Scf00094g00087 Petunia axillaris
Peaxi162Scf00314g00937 Petunia axillaris
Peaxi162Scf00330g00810 Petunia axillaris
Peaxi162Scf00526g00717 Petunia axillaris
Peaxi162Scf00526g00718 Petunia axillaris
Peaxi162Scf00771g00314 Petunia axillaris
PGR004G0502 Punica granatum
PGR031G3156 Punica granatum
PGR044G2743 Punica granatum
PGR102G0238 Punica granatum
PGSC0003DMG400011072 Solanum tuberosum
PGSC0003DMG400014221 Solanum tuberosum
PGSC0003DMG400019149 Solanum tuberosum
Phvul.001G234300 Phaseolus vulgaris
Phvul.005G184300 Phaseolus vulgaris
Phvul.008G192400 Phaseolus vulgaris
Phvul.010G016000 Phaseolus vulgaris
Potri.001G037300 Populus trichocarpa
Potri.003G187601 Populus trichocarpa
Potri.008G058500 Populus trichocarpa
Potri.010G200500 Populus trichocarpa
Potri.016G101100 Populus trichocarpa
Pp3c13_13170 Physcomitrium patens
Pp3c15_12410 Physcomitrium patens
Pp3c22_12960 Physcomitrium patens
Pp3c4_22100 Physcomitrium patens
Pp3c9_5280 Physcomitrium patens
Pp3c9_5310 Physcomitrium patens
PRCOL_00001793 Prasinoderma coloniale
PRCOL_00005398 Prasinoderma coloniale
PRCOL_00005934 Prasinoderma coloniale
Prupe.2G238800 Prunus persica
Prupe.3G107000 Prunus persica
Prupe.6G070800 Prunus persica
Prupe.6G260200 Prunus persica
Psat2g039960 Pisum sativum
Psat5g123320 Pisum sativum
Psat5g307720 Pisum sativum
Psat7g239520 Pisum sativum
PSO063G0476 Papaver somniferum
PSO170G6584 Papaver somniferum
PSO339G0491 Papaver somniferum
PSO513G0130 Papaver somniferum
QL01p029261 Quercus lobata
QL01p036796 Quercus lobata
QL07p029234 Quercus lobata
QL07p029871 Quercus lobata
QL08p061117 Quercus lobata
QL93p2008_0078 Quercus lobata
RcHm_v2.0_Chr1g0368091 Rosa chinensis
RcHm_v2.0_Chr2g0131521 Rosa chinensis
RcHm_v2.0_Chr3g0465651 Rosa chinensis
RcHm_v2.0_Chr5g0066321 Rosa chinensis
Rhsim05G0195600 Rhododendron simsii
Rhsim12G0182900 Rhododendron simsii
Rhsim13G0077400 Rhododendron simsii
Sabra01G0026100 Salix brachista
Sabra08G0043100 Salix brachista
Sabra10G0154700 Salix brachista
SalBow5G0962 Salvia bowleyana
SalBow5G1262 Salvia bowleyana
SalBow6G0690 Salvia bowleyana
SalBow6G2267 Salvia bowleyana
SalBow7G3825 Salvia bowleyana
Sc01g0004510 Simmondsia chinensis
Sc08g0004830 Simmondsia chinensis
Sc10g0001790 Simmondsia chinensis
Sed0001916 Sechium edule
Sed0005767 Sechium edule
Sed0011863 Sechium edule
Sed0012461 Sechium edule
Sed0024190 Sechium edule
SEGI_16259 Sequoiadendron giganteum
SEGI_38566 Sequoiadendron giganteum
SGA_v2.0_scaffold221G42695 Striga asiatica
SGA_v2.0_scaffold221G42700 Striga asiatica
SGA_v2.0_scaffold5G02826 Striga asiatica
SMO232G0105 Selaginella moellendorffii
SMO356G0725 Selaginella moellendorffii
SMO358G0397 Selaginella moellendorffii
Solyc03g117850.4 Solanum lycopersicum
Solyc09g011080.3 Solanum lycopersicum
Solyc10g086580.2 Solanum lycopersicum
Solyc11g027920.2 Solanum lycopersicum
Sopen03g036770 Solanum pennellii
Sopen09g005830 Solanum pennellii
Sopen10g035980 Solanum pennellii
Sp4g22000 Schrenkiella parvula
Sp5g28070 Schrenkiella parvula
TAR383G1091 Trochodendron aralioides
TAR633G0542 Trochodendron aralioides
TAR636G0751 Trochodendron aralioides
TAR636G1380 Trochodendron aralioides
TAR636G1477 Trochodendron aralioides
THA.LOC104808344 Tarenaya hassleriana
THA.LOC104813943 Tarenaya hassleriana
THA.LOC104816251 Tarenaya hassleriana
THA.LOC104824285 Tarenaya hassleriana
Thecc.05G034400 Theobroma cacao
Thecc.06G132500 Theobroma cacao
Thecc.06G132800 Theobroma cacao
Thecc.10G038500 Theobroma cacao
Thhalv10016600m.g Eutrema salsugineum
Thhalv10018573m.g Eutrema salsugineum
TPR.G14424 Trifolium pratense
TPR.G15829 Trifolium pratense
TPR.G27585 Trifolium pratense
TPR.G31777 Trifolium pratense
TPR.G5628 Trifolium pratense
TWI38G0277 Tripterygium wilfordii
TWI63G1677 Tripterygium wilfordii
TWI75G1879 Tripterygium wilfordii
TWI77G0089 Tripterygium wilfordii
unitig_22.g6683 Utricularia gibba
unitig_32.g11826 Utricularia gibba
unitig_32.g11827 Utricularia gibba
unitig_748.g8679 Utricularia gibba
unitig_8.g3314 Utricularia gibba
vmacro03031 Vaccinium macrocarpon
vmacro20182 Vaccinium macrocarpon
VMungo0331G1762 Vigna mungo
VMungo0647G0186 Vigna mungo
VMungo1080G1820 Vigna mungo
VMungo1383G2031 Vigna mungo
Zm00001eb067660 Zea mays
Zm00001eb164380 Zea mays
Zm00001eb164390 Zea mays

User provided reference genes

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