Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p34300 Brassica napus
A06p42220 Brassica napus
A07p34320 Brassica napus
A08p09290 Brassica napus
Aa31LG2G6220 Aethionema arabicum
Aa31LG4G12310 Aethionema arabicum
Aa31LG6G9120 Aethionema arabicum
Actinidia00565 Actinidia chinensis
Actinidia01369 Actinidia chinensis
Actinidia02591 Actinidia chinensis
Actinidia08117 Actinidia chinensis
Ah.02g130360 Amaranthus hybridus
Ah.03g133520 Amaranthus hybridus
Ah.05g172460 Amaranthus hybridus
AL1G51200 Arabidopsis lyrata
AL2G26490 Arabidopsis lyrata
AL5G14840 Arabidopsis lyrata
AL6G18260 Arabidopsis lyrata
Aqoxy3G01372 Aquilegia oxysepala
Aqoxy4G01931 Aquilegia oxysepala
Aqoxy5G01505 Aquilegia oxysepala
Aqoxy5G02426 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2260LN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3W6VHH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.74ZXLA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CIG4ZW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M3M4BF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WTB4CB Arachis hypogaea
AT1G37140 Arabidopsis thaliana
AT1G67770 Arabidopsis thaliana
AT3G26120 Arabidopsis thaliana
AT5G07930 Arabidopsis thaliana
ATR0684G101 Amborella trichopoda
ATR0824G152 Amborella trichopoda
Atru.chr11.2186 Acer truncatum
Atru.chr13.1333 Acer truncatum
Atru.chr13.1376 Acer truncatum
Atru.chr5.3115 Acer truncatum
AUR62005522 Chenopodium quinoa
AUR62024217 Chenopodium quinoa
BcaB03g15164 Brassica carinata
BcaB05g21595 Brassica carinata
BcaB07g30236 Brassica carinata
BcaC03g13201 Brassica carinata
BcaC03g17318 Brassica carinata
BcaC06g31086 Brassica carinata
BcaC06g31087 Brassica carinata
BcaC06g31088 Brassica carinata
BcaC06g31089 Brassica carinata
BcaC06g33926 Brassica carinata
BcaC07g37621 Brassica carinata
BcaC07g40440 Brassica carinata
BcaC08g46203 Brassica carinata
BcaNung04726 Brassica carinata
BolC2t06297H Brassica oleracea
BolC2t11341H Brassica oleracea
BolC6t39203H Brassica oleracea
BolC7t44042H Brassica oleracea
BolC8t47985H Brassica oleracea
BraA02t04936Z Brassica rapa
BraA02t08445Z Brassica rapa
BraA06t27138Z Brassica rapa
BraA07t31061Z Brassica rapa
BraA08t32926Z Brassica rapa
C02p03350 Brassica napus
C02p52660 Brassica napus
C06p42240 Brassica napus
C07p35140 Brassica napus
CAN.G1156.27 Capsicum annuum
CAN.G170.86 Capsicum annuum
CAN.G43.31 Capsicum annuum
CANSAT01G2330 Cannabis sativa
CANSAT01G2420 Cannabis sativa
CANSAT11G0993 Cannabis sativa
CANSAT11G1032 Cannabis sativa
CARHR033330 Cardamine hirsuta
CARHR147130 Cardamine hirsuta
CARHR205270 Cardamine hirsuta
Carub.0002s1420 Capsella rubella
Carub.0005s0403 Capsella rubella
Carub.0006s0682 Capsella rubella
Ca_20922_v3 Cicer arietinum L.
Ca_25130_v3 Cicer arietinum L.
CBR_g40348 Chara braunii
Cc00_g07330 Coffea canephora
Cc02_g17040 Coffea canephora
Cc11_g16130 Coffea canephora
CDE05G0551 Ceratophyllum demersum
CDE05G0900 Ceratophyllum demersum
CDE05G1042 Ceratophyllum demersum
CDE05G2979 Ceratophyllum demersum
CDE06G0128 Ceratophyllum demersum
CDE08G0026 Ceratophyllum demersum
CDE08G1417 Ceratophyllum demersum
CDE11G0753 Ceratophyllum demersum
Cfa005078 Carpinus fangiana
Cfa009258 Carpinus fangiana
Ciclev10003117m.g Citrus clementina
Ciclev10003827m.g Citrus clementina
Ciclev10030971m.g Citrus clementina
CiPaw.05G072100 Carya illinoinensis
CiPaw.05G177000 Carya illinoinensis
CiPaw.06G025600 Carya illinoinensis
ClCG03G009320 Citrullus lanatus
ClCG05G026100 Citrullus lanatus
ClCG08G017560 Citrullus lanatus
ClCG11G015550 Citrullus lanatus
COL.COLO4_23528 Corchorus olitorius
COL.COLO4_26025 Corchorus olitorius
COL.COLO4_26027 Corchorus olitorius
COL.COLO4_33159 Corchorus olitorius
Cpa.g.sc33.76 Carica papaya
Cpa.g.sc36.4 Carica papaya
CsaV3_2G025060 Cucumis sativus L.
CsaV3_2G026710 Cucumis sativus L.
CsaV3_2G026720 Cucumis sativus L.
CsaV3_4G028500 Cucumis sativus L.
CsaV3_5G023310 Cucumis sativus L.
CsaV3_5G030750 Cucumis sativus L.
CSS0012494 Camellia sinensis var. sinensis
CSS0016989 Camellia sinensis var. sinensis
DCAR_007037 Daucus carota
DCAR_014290 Daucus carota
DCAR_014291 Daucus carota
DCAR_028949 Daucus carota
DCAR_031170 Daucus carota
Dinv03538 Davidia involucrata
Dinv11033 Davidia involucrata
Dinv14752 Davidia involucrata
Dinv27375 Davidia involucrata
Dinv42013 Davidia involucrata
Duzib041G0031 Durio zibethinus
Duzib132G0357 Durio zibethinus
Duzib248G0953 Durio zibethinus
Duzib251G0077 Durio zibethinus
Duzib268G0324 Durio zibethinus
ECA234G4423 Erigeron canadensis
ECA246G5328 Erigeron canadensis
EL10Ac1g00029 Beta vulgaris
EL10Ac9g21660 Beta vulgaris
EL10As2g23183 Beta vulgaris
Eucgr.H02452 Eucalyptus grandis
FAN07G0628 Fragaria x ananassa
FAN12G1159 Fragaria x ananassa
FAN12G2926 Fragaria x ananassa
FAN12G3778 Fragaria x ananassa
FAN15G0055 Fragaria x ananassa
FAN15G1813 Fragaria x ananassa
FAN15G2462 Fragaria x ananassa
FAN15G3360 Fragaria x ananassa
FAN17G1749 Fragaria x ananassa
FAN20G0238 Fragaria x ananassa
FAN20G2063 Fragaria x ananassa
FAN20G2683 Fragaria x ananassa
FAN20G2705 Fragaria x ananassa
FAN22G0638 Fragaria x ananassa
FAN24G0388 Fragaria x ananassa
FAN24G2218 Fragaria x ananassa
FAN24G2428 Fragaria x ananassa
FAN27G0296 Fragaria x ananassa
FAN27G0524 Fragaria x ananassa
FAN27G1044 Fragaria x ananassa
FAN27G1173 Fragaria x ananassa
FvH4_2g10100 Fragaria vesca
FvH4_2g26190 Fragaria vesca
FvH4_2g26200 Fragaria vesca
FvH4_2g26210 Fragaria vesca
FvH4_2g26220 Fragaria vesca
FvH4_4g25250 Fragaria vesca
Glyma.11G112500 Glycine max
Glyma.11G244300 Glycine max
Glyma.12G038400 Glycine max
Glyma.13G083500 Glycine max
Glyma.14G164800 Glycine max
Glyma.18G012600 Glycine max
Gohir.A01G003659 Gossypium hirsutum
Gohir.A03G132100 Gossypium hirsutum
Gohir.A06G041500 Gossypium hirsutum
Gohir.A12G041500 Gossypium hirsutum
Gohir.A12G145900 Gossypium hirsutum
Gohir.D01G003601 Gossypium hirsutum
Gohir.D02G156200 Gossypium hirsutum
Gohir.D06G042400 Gossypium hirsutum
Gohir.D12G030700 Gossypium hirsutum
Gohir.D12G150500 Gossypium hirsutum
Gorai.002G004500 Gossypium raimondii
Gorai.005G175000 Gossypium raimondii
Gorai.008G031600 Gossypium raimondii
Gorai.008G162000 Gossypium raimondii
Gorai.010G047700 Gossypium raimondii
GSVIVG01000583001 Vitis vinifera
GSVIVG01003988001 Vitis vinifera
GSVIVG01008932001 Vitis vinifera
GSVIVG01024201001 Vitis vinifera
HanXRQChr04g0118671 Helianthus annuus
HanXRQChr06g0174891 Helianthus annuus
HanXRQChr10g0297401 Helianthus annuus
HanXRQChr10g0318781 Helianthus annuus
HanXRQChr12g0385741 Helianthus annuus
HanXRQChr17g0536971 Helianthus annuus
HanXRQChr17g0540121 Helianthus annuus
Haze_00515 Corylus avellana
Haze_02304 Corylus avellana
Haze_12291 Corylus avellana
Hma1.2p1_0009F.1_g006020 Hydrangea macrophylla
HPP92_012750 Vanilla planifolia
HPP92_022344 Vanilla planifolia
HPP92_022352 Vanilla planifolia
Hund06048 Selenicereus undatus
Hund16827 Selenicereus undatus
Hund25409 Selenicereus undatus
Lalb_Chr01g0002241 Lupinus albus
Lalb_Chr03g0025391 Lupinus albus
Lalb_Chr08g0230841 Lupinus albus
Lalb_Chr17g0343981 Lupinus albus
Lalb_Chr23g0277721 Lupinus albus
Lj3A1062T100 Lonicera japonica
Lj3A1062T99 Lonicera japonica
Lj3g0016033 Lotus japonicus
Lj3g0017233 Lotus japonicus
Lj4g0015291 Lotus japonicus
Lj6C816T14 Lonicera japonica
Lj6g0004200 Lotus japonicus
Lsat_1_v5_gn_3_29940 Lactuca sativa
Lsat_1_v5_gn_4_3800 Lactuca sativa
Lsat_1_v5_gn_4_68481 Lactuca sativa
Lsat_1_v5_gn_7_35861 Lactuca sativa
Manes.02G159500 Manihot esculenta
Manes.04G085000 Manihot esculenta
Manes.12G019700 Manihot esculenta
Manes.13G020000 Manihot esculenta
Mapoly0005s0196 Marchantia polymorpha
MBI01_g33389_MAGBIO Magnolia biondii
MBI06_g01057_MAGBIO Magnolia biondii
MBI07_g04127_MAGBIO Magnolia biondii
MBI10_g18563_MAGBIO Magnolia biondii
MBI15_g47611_MAGBIO Magnolia biondii
MBI16_g20169_MAGBIO Magnolia biondii
MBI18_g25816_MAGBIO Magnolia biondii
MBI18_g31638_MAGBIO Magnolia biondii
MD08G1171900 Malus domestica
MD08G1172100 Malus domestica
MD10G1065500 Malus domestica
MD13G1105600 Malus domestica
MD15G1357500 Malus domestica
MD16G1105800 Malus domestica
Medtr0166s0030 Medicago truncatula
Medtr0166s0040 Medicago truncatula
Medtr3g086380 Medicago truncatula
Medtr4g071310 Medicago truncatula
Medtr5g059620 Medicago truncatula
Medtr5g059640 Medicago truncatula
Medtr6g012500 Medicago truncatula
MELO3C003062.2 Cucumis melo
MELO3C010703.2 Cucumis melo
MELO3C011917.2 Cucumis melo
MELO3C032636.2 Cucumis melo
Migut.C01182 Erythranthe guttata
Migut.K00632 Erythranthe guttata
Migut.N01272 Erythranthe guttata
Migut.N03316 Erythranthe guttata
Nitab4.5_0000041g0080 Nicotiana tabacum
Nitab4.5_0000496g0230 Nicotiana tabacum
Nitab4.5_0002723g0120 Nicotiana tabacum
Nitab4.5_0004764g0020 Nicotiana tabacum
Nitab4.5_0005933g0010 Nicotiana tabacum
Nitab4.5_0010034g0030 Nicotiana tabacum
Nn1g08638 Nelumbo nucifera
Nn2g11577 Nelumbo nucifera
Nn3g16631 Nelumbo nucifera
Nn4g22520 Nelumbo nucifera
Nn6g32214 Nelumbo nucifera
Nn6g32215 Nelumbo nucifera
Nn6g32282 Nelumbo nucifera
Nn8g39955 Nelumbo nucifera
Oeu004658.1 Olea europaea
Oeu005372.1 Olea europaea
Oeu020717.1 Olea europaea
Oeu030032.1 Olea europaea
Oeu043785.1 Olea europaea
Os01g0907900 Oryza sativa ssp. japonica
Os02g0157900 Oryza sativa ssp. japonica
Os09g0531200 Oryza sativa ssp. japonica
Peaxi162Scf00016g00154 Petunia axillaris
Peaxi162Scf00016g00236 Petunia axillaris
Peaxi162Scf00016g00250 Petunia axillaris
Peaxi162Scf00094g01715 Petunia axillaris
Peaxi162Scf00094g01810 Petunia axillaris
Peaxi162Scf00128g00553 Petunia axillaris
Peaxi162Scf00353g00615 Petunia axillaris
Peaxi162Scf00651g00029 Petunia axillaris
Peaxi162Scf03783g00001 Petunia axillaris
PGR042G0997 Punica granatum
PGR042G3310 Punica granatum
PGR119G0269 Punica granatum
PGSC0003DMG400003129 Solanum tuberosum
PGSC0003DMG400010773 Solanum tuberosum
PGSC0003DMG400023450 Solanum tuberosum
PGSC0003DMG400034905 Solanum tuberosum
PGSC0003DMG400035883 Solanum tuberosum
PGSC0003DMG400040138 Solanum tuberosum
PGSC0003DMG400040602 Solanum tuberosum
Phvul.001G256300 Phaseolus vulgaris
Phvul.008G167000 Phaseolus vulgaris
Phvul.011G040500 Phaseolus vulgaris
Potri.002G088200 Populus trichocarpa
Potri.008G183000 Populus trichocarpa
Potri.010G051100 Populus trichocarpa
Potri.013G084400 Populus trichocarpa
Pp3c15_22650 Physcomitrium patens
Pp3c9_23750 Physcomitrium patens
Prupe.1G240800 Prunus persica
Prupe.1G504600 Prunus persica
Prupe.1G504700 Prunus persica
Prupe.8G087500 Prunus persica
Psat2g076240 Pisum sativum
Psat5g092560 Pisum sativum
Psat7g139480 Pisum sativum
Psat7g139520 Pisum sativum
PSO017G2044 Papaver somniferum
PSO063G7356 Papaver somniferum
PSO170G6883 Papaver somniferum
PSO478G2194 Papaver somniferum
PSO478G2595 Papaver somniferum
PSO541G1238 Papaver somniferum
PSO541G2425 Papaver somniferum
PSO675G1149 Papaver somniferum
PSO675G9221 Papaver somniferum
PSO782G0502 Papaver somniferum
PSO782G5229 Papaver somniferum
QL03p056180 Quercus lobata
QL09p037126 Quercus lobata
QL11p045785 Quercus lobata
RcHm_v2.0_Chr4g0432441 Rosa chinensis
RcHm_v2.0_Chr6g0267061 Rosa chinensis
RcHm_v2.0_Chr6g0294631 Rosa chinensis
RcHm_v2.0_Chr6g0294781 Rosa chinensis
RcHm_v2.0_Chr6g0294791 Rosa chinensis
Rhsim06G0108500 Rhododendron simsii
Rhsim11G0182300 Rhododendron simsii
Rhsim12G0038500 Rhododendron simsii
Sabra02G0069500 Salix brachista
Sabra10G0018800 Salix brachista
Sabra13G0078800 Salix brachista
SalBow2G2176 Salvia bowleyana
SalBow6G1382 Salvia bowleyana
SalBow6G3894 Salvia bowleyana
SalBow7G3068 Salvia bowleyana
Sc01g0001470 Simmondsia chinensis
Sc04g0009730 Simmondsia chinensis
Sc14g0008850 Simmondsia chinensis
Sc23g0000880 Simmondsia chinensis
Sed0004374 Sechium edule
Sed0006047 Sechium edule
Sed0012446 Sechium edule
Sed0016438 Sechium edule
Sed0027932 Sechium edule
SEGI_01424 Sequoiadendron giganteum
SEGI_06468 Sequoiadendron giganteum
SEGI_07838 Sequoiadendron giganteum
SEGI_08140 Sequoiadendron giganteum
SEGI_11872 Sequoiadendron giganteum
SEGI_12939 Sequoiadendron giganteum
SEGI_16737 Sequoiadendron giganteum
SEGI_20376 Sequoiadendron giganteum
SEGI_25956 Sequoiadendron giganteum
SEGI_29753 Sequoiadendron giganteum
SEGI_32145 Sequoiadendron giganteum
SEGI_36811 Sequoiadendron giganteum
SEGI_39321 Sequoiadendron giganteum
SEGI_41021 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29584 Striga asiatica
SGA_v2.0_scaffold28G12022 Striga asiatica
SGA_v2.0_scaffold4274G54461 Striga asiatica
SGA_v2.0_scaffold52G19016 Striga asiatica
SGA_v2.0_scaffold80G25877 Striga asiatica
SHI05592 Sapria himalayana
SHI15309 Sapria himalayana
SMO353G0011 Selaginella moellendorffii
SMO367G0636 Selaginella moellendorffii
Solyc01g110200.2 Solanum lycopersicum
Solyc01g110210.3 Solanum lycopersicum
Solyc01g110220.1 Solanum lycopersicum
Solyc01g110230.1 Solanum lycopersicum
Solyc01g110240.1 Solanum lycopersicum
Solyc01g110260.3 Solanum lycopersicum
Solyc05g013930.2 Solanum lycopersicum
Solyc05g056360.2 Solanum lycopersicum
Sopen01g052370 Solanum pennellii
Sopen01g052380 Solanum pennellii
Sopen01g052390 Solanum pennellii
Sopen01g052400 Solanum pennellii
Sopen01g052410 Solanum pennellii
Sopen05g008860 Solanum pennellii
Sopen05g034750 Solanum pennellii
Sp1g31370 Schrenkiella parvula
Sp2g15330 Schrenkiella parvula
Sp5g22780 Schrenkiella parvula
Sp6g35030 Schrenkiella parvula
SpUn0001_0030 Schrenkiella parvula
SpUn1180_0010 Schrenkiella parvula
TAR371G0442 Trochodendron aralioides
TAR622G0327 Trochodendron aralioides
TAR629G0984 Trochodendron aralioides
THA.LOC104804553 Tarenaya hassleriana
THA.LOC104817030 Tarenaya hassleriana
THA.LOC104825543 Tarenaya hassleriana
THA.LOC104825677 Tarenaya hassleriana
Thecc.02G077700 Theobroma cacao
Thecc.02G266800 Theobroma cacao
Thecc.08G118100 Theobroma cacao
Thhalv10005263m.g Eutrema salsugineum
Thhalv10005573m.g Eutrema salsugineum
Thhalv10015520m.g Eutrema salsugineum
Thhalv10018362m.g Eutrema salsugineum
Thhalv10024138m.g Eutrema salsugineum
TPR.G16227 Trifolium pratense
TPR.G5661 Trifolium pratense
TWI18G1085 Tripterygium wilfordii
TWI75G0184 Tripterygium wilfordii
TWI79G0977 Tripterygium wilfordii
unitig_22.g6563 Utricularia gibba
unitig_744.g24555 Utricularia gibba
unitig_747.g21481 Utricularia gibba
unitig_8.g2919 Utricularia gibba
unitig_8.g3248 Utricularia gibba
vmacro02065 Vaccinium macrocarpon
VMungo0647G1687 Vigna mungo
VMungo1127G0207 Vigna mungo
Zm00001eb103420 Zea mays
Zm00001eb144140 Zea mays
Zm00001eb207800 Zea mays

User provided reference genes

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